CSPI02G21180 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G21180
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	cytochrome c oxidase subunit 6b-1-like
Location	Chr2: 18617364 .. 18620122 (+)
RNA-Seq Expression	CSPI02G21180
Synteny	CSPI02G21180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAATCATCGGAACCAGTGTGTGGTTAATCTTAACCTAACCAACGGGTTAGTGTTTGGTCCCTCTCTGCTTTGCTCTTGCCCTGCCGCCACCCTCTGACATCGATTCCTTGGGCTTGTACCTCCAATTCAAGCCGATCGCTTCTTCTTCTTCTTCCATCCATGGCGGAAGCCCAGAGCCAACAAACCCCTTCCTTATCTGAGGTATTTTTTCGCACCTTTCACCATCTGCCTCCTTCTTTCTTTTACTTTTACCTGCCTTCTTCCTTCTTTTTTGTTAATTTTCCATGGTAATGTATTTTCATTGCTCGATTCGCAATTGATTTCGACAGATCGGTTCTTATGTGGTAGGGATTCTTCAATTATGAAGACATGTGAGATTCTTAGTAGTAAATTCATTCATTTTTATTATTTAGAAGAAATTTTGTAGTCCTGTGGCAAATTCCCTTGATTAGATCCCCCGATTCCGCTGGAAATAGAAATAAATGAGTTTCATGACTGGATTTCTCTGGTTTGAATCCGATAAATGATTGGTGAATGCTTCCTTTGGGTTCTGGTAGTTTATGTTACTCTCTTTATTTCATTTCTTTTGAAAAGATCAGTATGTTGACTAAGTTTGAAAGAATTGGTAATTATCACTTTCATTGTTTGGGGAACATGCATTTGTTTTTCACCCCTCATTAAAGAAAAAAAATTAATTGAAATTTGGAAAATAAGAACAATAGCCCAACTCTAAGCAGAGGCTAGTTAATGATTTCACCTTACAGCTCTGTAGGAGAGAAGGAAGGAAATAAACAAGCTTAAGCTGCCTAGGTTACTAGGGAATTGAAATTAATTCGAAGTTAATTTTTGTTCTTAACTAGAACTCCCAGTAATGAACCGTGTTGGTTCATATCTCAATTGGATTGCTATATGAATCCTTGGGGGCTTTGCTATCTTATGATTTTCTTTGTTTTACACTTGTATTTTGATTTTACATGGTGAAAGTAAATTTATCTTAAAAGCATAGTGAGAAACACTTCTTTGGTTACTATCGTTCTCATTTAGGGGCATCTTTGTATAGCCCTGTCTCCTTCGCTTTTACGAATTCTCAACCTGCTTCTAATGTTCCAATCTAAGAATTGAGAATGACTTTCTTCTAATTTGGCTTTTAGCAATATTCCTTGAAAGAAAAAGAGGAGAAGGTGGATATACCACAGCCCTCTGAAGTGAAAGAGGTGGAGAACTCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGTTGCTGATCAAAGCAGTGACATTCCCCCTGCTGAAGAATCCAATGGAGATTCTTCAGCAGCTGCTGTAGAGGACTCTGAAACCAGTCCTGCTGCTGAGAACGACAGTGGAGCTGCTGAAGAAGAAAGCAGCGGAGCTGGAGAAGAGGAAAATTCTGGTGATCAAGAAAGCACTGACGAGCGACCTGAGATTAAGGTTACTGCCCTGATGATTTGTTTATTTTGGCAATACATTGCGTGTAGGCATATCCTATAGTTTTGACTTTTGTATATATTGTTCATTGGTTTTATTGCTCTCATATGCAGCTCGAAACAGCACCAGTAGACTTCCGCTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGATATATTGAATTCCATAGGTAAGTATTGACAAGTTTTTCAACGTTTGAACTTCATTTGTTGGTCCTTTTATAATTTAGTTCTTGAAACTACATATGTACTTATCTTTGTAATGTGTTCAGATGCACACAAGCAAAAGGGGAAGGTGCTCCAGAGTGCGAAAAGTTTGCAAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTATGCGTTTTTCCTACCTTGATGTCTGGATTAAGTTTCATGTTTCATTCGCATGTTCTGTGTTGCGGGAGCTTACCTATGATCTCATTGTATATTCCACTTATTTTGACTGTTACTTTGGGTCATTAATTGTAACTGATAAGTAAAGTTCTATGATGTTAGGAAACTGCTTAATCTAATTGTTTACTTATAAACTATGAGCTCCACGTTCCATGTATTTATCTGATGCACTTCTGCCAATAGTTTCTACTCATCAACGGATCATGCATTAGTTTCTCGTTTGCCTGTCTAATGAACTATTAATGATGCTGAAAGAAGTTTCATCTTTAGTATCTTGGCGTAAGTAACATCGTGCATCATGATAATCGTTGCAGGTAGAGAAATGGAACGAGCAGAGGGAGAATGGAACGTTCCCAGGGCCGCTGTAGGAGTAGGGAGTTGCATGTTCGATAGTTCAGCAGCAGTTTGCCACACGCTGCCATAAAATGGCAAATAAACTCAGTTCTCTCTTTCAAACAATTGAGTTATAATAATTTTCGGCCGGTTTTTGGTATTCTACTCAAAATCCATTTGCAACCAAATTTTTGTTGATGCAACCACTTTGTTCCTGGTTTACATACATGCATTAATCGTTTTTCCATATATTAAGCAAATAGTTGCAAGGAGCTAGAATCACTCCTCTAAGACCATCATCAATTTATATGCACTGATTGTTGCATTTATGAAAATTCTAATAAACATGTAGAAAGTTATCCTCTTCTTTATTTTTCAGCTTTGCTGATGAATTGTGCAATGCATAGATGCAAATCTTTCATCTTGATACGAAACGAACTGAACTTGTGAAGACGAATCAATTACATCATAGTGATTGACAAAGTAGGTAAATTGAATTTGACATAACG

mRNA sequence

TGGAATCATCGGAACCAGTGTGTGGTTAATCTTAACCTAACCAACGGGTTAGTGTTTGGTCCCTCTCTGCTTTGCTCTTGCCCTGCCGCCACCCTCTGACATCGATTCCTTGGGCTTGTACCTCCAATTCAAGCCGATCGCTTCTTCTTCTTCTTCCATCCATGGCGGAAGCCCAGAGCCAACAAACCCCTTCCTTATCTGAGCAATATTCCTTGAAAGAAAAAGAGGAGAAGGTGGATATACCACAGCCCTCTGAAGTGAAAGAGGTGGAGAACTCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGTTGCTGATCAAAGCAGTGACATTCCCCCTGCTGAAGAATCCAATGGAGATTCTTCAGCAGCTGCTGTAGAGGACTCTGAAACCAGTCCTGCTGCTGAGAACGACAGTGGAGCTGCTGAAGAAGAAAGCAGCGGAGCTGGAGAAGAGGAAAATTCTGGTGATCAAGAAAGCACTGACGAGCGACCTGAGATTAAGCTCGAAACAGCACCAGTAGACTTCCGCTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGATATATTGAATTCCATAGATGCACACAAGCAAAAGGGGAAGGTGCTCCAGAGTGCGAAAAGTTTGCAAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAATGGAACGAGCAGAGGGAGAATGGAACGTTCCCAGGGCCGCTGTAGGAGTAGGGAGTTGCATGTTCGATAGTTCAGCAGCAGTTTGCCACACGCTGCCATAAAATGGCAAATAAACTCAGTTCTCTCTTTCAAACAATTGAGTTATAATAATTTTCGGCCGGTTTTTGGTATTCTACTCAAAATCCATTTGCAACCAAATTTTTGTTGATGCAACCACTTTGTTCCTGGTTTACATACATGCATTAATCGTTTTTCCATATATTAAGCAAATAGTTGCAAGGAGCTAGAATCACTCCTCTAAGACCATCATCAATTTATATGCACTGATTGTTGCATTTATGAAAATTCTAATAAACATGTAGAAAGTTATCCTCTTCTTTATTTTTCAGCTTTGCTGATGAATTGTGCAATGCATAGATGCAAATCTTTCATCTTGATACGAAACGAACTGAACTTGTGAAGACGAATCAATTACATCATAGTGATTGACAAAGTAGGTAAATTGAATTTGACATAACG

Coding sequence (CDS)

ATGGCGGAAGCCCAGAGCCAACAAACCCCTTCCTTATCTGAGCAATATTCCTTGAAAGAAAAAGAGGAGAAGGTGGATATACCACAGCCCTCTGAAGTGAAAGAGGTGGAGAACTCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGTTGCTGATCAAAGCAGTGACATTCCCCCTGCTGAAGAATCCAATGGAGATTCTTCAGCAGCTGCTGTAGAGGACTCTGAAACCAGTCCTGCTGCTGAGAACGACAGTGGAGCTGCTGAAGAAGAAAGCAGCGGAGCTGGAGAAGAGGAAAATTCTGGTGATCAAGAAAGCACTGACGAGCGACCTGAGATTAAGCTCGAAACAGCACCAGTAGACTTCCGCTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGATATATTGAATTCCATAGATGCACACAAGCAAAAGGGGAAGGTGCTCCAGAGTGCGAAAAGTTTGCAAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAATGGAACGAGCAGAGGGAGAATGGAACGTTCCCAGGGCCGCTGTAG

Protein sequence

MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVADQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERPEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVEKWNEQRENGTFPGPL*

Homology

[Close]

BLAST of CSPI02G21180 vs. ExPASy Swiss-Prot
Match: Q9S7L9 (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-43
Identity = 105/201 (52.24%), Postives = 139/201 (69.15%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEV--ENSENAAPAEVVVKNDEPPVE- 60
           MA+A + QTPSLSEQY L+++ ++    +P EVKEV  E +  A   +     +E PVE 
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKEESPVEE 60

Query: 61  ---AVADQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQE 120
               V ++S   P + E   ++ AAA +++E +PA      AAEE +     +EN+ ++ 
Sbjct: 61  AVSVVEEKSESAPESTEVASEAPAAAEDNAEETPA------AAEENN-----DENASEEV 120

Query: 121 STDERPEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLC 180
           + +   EIKLETAP DFRFPTTNQTRHCFTRY+E+HRC  AKG+ APEC+KFAK+YRSLC
Sbjct: 121 AEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLC 180

Query: 181 PSEWVEKWNEQRENGTFPGPL 196
           PSEWV++WNEQRENGTFPGPL
Sbjct: 181 PSEWVDRWNEQRENGTFPGPL 190

[Close]

BLAST of CSPI02G21180 vs. ExPASy Swiss-Prot
Match: Q9SUD3 (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-35
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 121 EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE 180
           EI+L+TAP DFRFPTTNQTRHCFTRYIEFHRCT AKGE A ECE+FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 181 KWNEQRENGTFPGPL 196
           KWNEQRE GTFPGPL
Sbjct: 64  KWNEQRETGTFPGPL 78

[Close]

BLAST of CSPI02G21180 vs. ExPASy Swiss-Prot
Match: Q945L0 (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 9.2e-35
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 121 EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE 180
           EI+L+TAP DFRFPTTNQTRHCFTRYIEFHRCT AKGE + +CE+FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 181 KWNEQRENGTFPGPL 196
           KWNEQRE+GTFPGPL
Sbjct: 64  KWNEQRESGTFPGPL 78

[Close]

BLAST of CSPI02G21180 vs. ExPASy Swiss-Prot
Match: O94581 (Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 2.6e-21
Identity = 44/84 (52.38%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 112 DQESTDERPEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYR 171
           +QE  +   +    T   D RFP TNQT+HCF  YI++ RC +AKGE    C++F   Y+
Sbjct: 3   EQEDQEAPKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQ 62

Query: 172 SLCPSEWVEKWNEQRENGTFPGPL 196
           SLCP EWVE+W+EQRENGTFP P+
Sbjct: 63  SLCPMEWVERWDEQRENGTFPAPI 86

[Close]

BLAST of CSPI02G21180 vs. ExPASy Swiss-Prot
Match: Q4R374 (Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis OX=9541 GN=COX6B1 PE=3 SV=3)

HSP 1 Score: 90.5 bits (223), Expect = 2.3e-17
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = 0


Query: 125 ETAPVDFRFPTTNQTRHCFTRYIEFHRCTQA---KGEGAPECEKFAKYYRSLCPSEWVEK 184
           +TAP D RFP  NQTR+C+  Y++FHRC +A   KG     CE + + Y+SLCP+ WV  
Sbjct: 14  KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTTKGGNVSVCEWYQRVYQSLCPTSWVTD 73

Query: 185 WNEQRENGTFPGPL 196
           W+EQR  GTFPG +
Sbjct: 74  WDEQRAEGTFPGKI 87

[Close]

BLAST of CSPI02G21180 vs. ExPASy TrEMBL
Match: A0A0A0LNV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369100 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA
Sbjct: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60

Query: 61  DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERP 120
           DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERP
Sbjct: 61  DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERP 120

Query: 121 EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE 180
           EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE
Sbjct: 121 EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE 180

Query: 181 KWNEQRENGTFPGPL 196
           KWNEQRENGTFPGPL
Sbjct: 181 KWNEQRENGTFPGPL 195

[Close]

BLAST of CSPI02G21180 vs. ExPASy TrEMBL
Match: A0A5A7VCW9 (Cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004690 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.9e-86
Identity = 178/196 (90.82%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQS+QT SL+EQYSLKEKEEKVDIP PSEVKEVEN+ENAAPAEVVVKNDEPPVEA A
Sbjct: 1   MAEAQSEQTLSLAEQYSLKEKEEKVDIPLPSEVKEVENAENAAPAEVVVKNDEPPVEADA 60

Query: 61  DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSG-AAEEESSGAGEEENSGDQESTDER 120
           DQSSD PPAEES       AVEDSET PAAENDSG AAEEESSGAGEEENSGDQESTDE+
Sbjct: 61  DQSSDNPPAEES------PAVEDSETGPAAENDSGAAAEEESSGAGEEENSGDQESTDEQ 120

Query: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180
           PEIKLETAPVDFRFPTTNQTRHCFTRYIE+HRCTQAKGEGAPECEKFAKYYRSLCPSEWV
Sbjct: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180

Query: 181 EKWNEQRENGTFPGPL 196
           EKWNEQRENGTFPGPL
Sbjct: 181 EKWNEQRENGTFPGPL 190

[Close]

BLAST of CSPI02G21180 vs. ExPASy TrEMBL
Match: A0A1S3BC78 (cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo OX=3656 GN=LOC103488079 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.9e-86
Identity = 178/196 (90.82%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQS+QT SL+EQYSLKEKEEKVDIP PSEVKEVEN+ENAAPAEVVVKNDEPPVEA A
Sbjct: 1   MAEAQSEQTLSLAEQYSLKEKEEKVDIPLPSEVKEVENAENAAPAEVVVKNDEPPVEADA 60

Query: 61  DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSG-AAEEESSGAGEEENSGDQESTDER 120
           DQSSD PPAEES       AVEDSET PAAENDSG AAEEESSGAGEEENSGDQESTDE+
Sbjct: 61  DQSSDNPPAEES------PAVEDSETGPAAENDSGAAAEEESSGAGEEENSGDQESTDEQ 120

Query: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180
           PEIKLETAPVDFRFPTTNQTRHCFTRYIE+HRCTQAKGEGAPECEKFAKYYRSLCPSEWV
Sbjct: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180

Query: 181 EKWNEQRENGTFPGPL 196
           EKWNEQRENGTFPGPL
Sbjct: 181 EKWNEQRENGTFPGPL 190

[Close]

BLAST of CSPI02G21180 vs. ExPASy TrEMBL
Match: A0A6J1HH76 (cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111462906 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.2e-76
Identity = 159/196 (81.12%), Postives = 171/196 (87.24%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQS++ PSLSEQYSLKEKEEKVDIP+PSEV+EVENSENA PAEVVVKNDEPPVEA A
Sbjct: 1   MAEAQSEKPPSLSEQYSLKEKEEKVDIPKPSEVEEVENSENAVPAEVVVKNDEPPVEADA 60

Query: 61  DQSSDIPPAEESNGD-SSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDER 120
           DQ S+ PPA+ +NGD S+AAAVEDSET+ A              AGEEE SGDQESTDER
Sbjct: 61  DQGSNNPPADVNNGDASAAAAVEDSETNAA--------------AGEEEISGDQESTDER 120

Query: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180
           PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRCTQAKGEGAPEC+KFAKYYRSLCP+EWV
Sbjct: 121 PEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECDKFAKYYRSLCPNEWV 180

Query: 181 EKWNEQRENGTFPGPL 196
           EKWNEQRENG FPGPL
Sbjct: 181 EKWNEQRENGCFPGPL 182

[Close]

BLAST of CSPI02G21180 vs. ExPASy TrEMBL
Match: A0A6J1KAZ5 (cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492226 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 159/196 (81.12%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQS++ PSLSEQYSLKEKEEKVDI +PSEVKEVENSENAAPAE+VVKNDEPPVEA A
Sbjct: 1   MAEAQSEKPPSLSEQYSLKEKEEKVDILKPSEVKEVENSENAAPAEIVVKNDEPPVEADA 60

Query: 61  DQSSDIPPAEESNGD-SSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDER 120
           D+ S+ PPA+E+NGD S+AAAVEDSET+ A              AGEEE SGDQESTDE+
Sbjct: 61  DKGSNNPPADENNGDASAAAAVEDSETNAA--------------AGEEEISGDQESTDEQ 120

Query: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180
           PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRCTQAKGEGAPEC+KFAKYYRSLCPSEWV
Sbjct: 121 PEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECDKFAKYYRSLCPSEWV 180

Query: 181 EKWNEQRENGTFPGPL 196
           EKWNEQRENG FPGPL
Sbjct: 181 EKWNEQRENGCFPGPL 182

[Close]

BLAST of CSPI02G21180 vs. NCBI nr
Match: XP_004152624.1 (cytochrome c oxidase subunit 6b-1 [Cucumis sativus] >KGN62709.1 hypothetical protein Csa_022497 [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-98
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA
Sbjct: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60

Query: 61  DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERP 120
           DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERP
Sbjct: 61  DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDERP 120

Query: 121 EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE 180
           EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE
Sbjct: 121 EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE 180

Query: 181 KWNEQRENGTFPGPL 196
           KWNEQRENGTFPGPL
Sbjct: 181 KWNEQRENGTFPGPL 195

[Close]

BLAST of CSPI02G21180 vs. NCBI nr
Match: XP_038886001.1 (cytochrome c oxidase subunit 6b-1-like [Benincasa hispida])

HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86
Identity = 176/196 (89.80%), Postives = 186/196 (94.90%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQS++TPSL+EQYSLKEKEEKVDIP PSEVKEVENSENAA AEVVVKNDEPPVEA A
Sbjct: 1   MAEAQSEKTPSLAEQYSLKEKEEKVDIPNPSEVKEVENSENAAHAEVVVKNDEPPVEAEA 60

Query: 61  DQSSDIPPAEESNGDS-SAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDER 120
           +Q SD  PAEE+NGD+ +AAAVEDSETSPAAENDSGAA+EESSGAG EENSGDQESTDER
Sbjct: 61  NQGSDDSPAEENNGDAPAAAAVEDSETSPAAENDSGAADEESSGAGGEENSGDQESTDER 120

Query: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180
           PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRC QAKGEGAPEC+KFAKYYRSLCPSEWV
Sbjct: 121 PEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECDKFAKYYRSLCPSEWV 180

Query: 181 EKWNEQRENGTFPGPL 196
           EKWNEQRENGTFPGPL
Sbjct: 181 EKWNEQRENGTFPGPL 196

[Close]

BLAST of CSPI02G21180 vs. NCBI nr
Match: XP_008444857.1 (PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis melo] >KAA0065134.1 cytochrome c oxidase subunit 6b-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.4e-85
Identity = 178/196 (90.82%), Postives = 183/196 (93.37%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQS+QT SL+EQYSLKEKEEKVDIP PSEVKEVEN+ENAAPAEVVVKNDEPPVEA A
Sbjct: 1   MAEAQSEQTLSLAEQYSLKEKEEKVDIPLPSEVKEVENAENAAPAEVVVKNDEPPVEADA 60

Query: 61  DQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSG-AAEEESSGAGEEENSGDQESTDER 120
           DQSSD PPAEES       AVEDSET PAAENDSG AAEEESSGAGEEENSGDQESTDE+
Sbjct: 61  DQSSDNPPAEES------PAVEDSETGPAAENDSGAAAEEESSGAGEEENSGDQESTDEQ 120

Query: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180
           PEIKLETAPVDFRFPTTNQTRHCFTRYIE+HRCTQAKGEGAPECEKFAKYYRSLCPSEWV
Sbjct: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180

Query: 181 EKWNEQRENGTFPGPL 196
           EKWNEQRENGTFPGPL
Sbjct: 181 EKWNEQRENGTFPGPL 190

[Close]

BLAST of CSPI02G21180 vs. NCBI nr
Match: XP_023547029.1 (cytochrome c oxidase subunit 6b-1-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.5 bits (763), Expect = 4.2e-77
Identity = 161/196 (82.14%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQS++ PSLSEQYSLKEKEEKVDIP+PSEVKEV+NSENAAPAEVVVKNDEPPVEA A
Sbjct: 1   MAEAQSEKPPSLSEQYSLKEKEEKVDIPKPSEVKEVDNSENAAPAEVVVKNDEPPVEADA 60

Query: 61  DQSSDIPPAEESNGD-SSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDER 120
           DQ SD  PA+E+NGD S+AAAVEDSET+ A              AGEEE SGDQESTDER
Sbjct: 61  DQGSDNTPADENNGDASAAAAVEDSETNAA--------------AGEEEISGDQESTDER 120

Query: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180
           PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRCTQAKGEGAPEC+KFAKYYRSLCP+EWV
Sbjct: 121 PEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECDKFAKYYRSLCPNEWV 180

Query: 181 EKWNEQRENGTFPGPL 196
           EKWNEQRENG FPGPL
Sbjct: 181 EKWNEQRENGCFPGPL 182

[Close]

BLAST of CSPI02G21180 vs. NCBI nr
Match: KAG6598699.1 (Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 298.5 bits (763), Expect = 4.2e-77
Identity = 161/196 (82.14%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEVENSENAAPAEVVVKNDEPPVEAVA 60
           MAEAQS++ PSLSEQYSLKEKEEKVDIP+PSEVKEVENSENA PAEVVVKNDEPPVEA A
Sbjct: 1   MAEAQSEKPPSLSEQYSLKEKEEKVDIPKPSEVKEVENSENADPAEVVVKNDEPPVEADA 60

Query: 61  DQSSDIPPAEESNGD-SSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQESTDER 120
           DQ S+ PPA+E+NGD S+AAAVEDSET+ A              AGEEE SGDQESTDER
Sbjct: 61  DQGSNNPPADENNGDASAAAAVEDSETNAA--------------AGEEEISGDQESTDER 120

Query: 121 PEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWV 180
           PEIKLETAP DFRFPTTNQTRHCFTRYIE+HRCTQAKGEGAPEC+KFAKYYRSLCP+EWV
Sbjct: 121 PEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCTQAKGEGAPECDKFAKYYRSLCPNEWV 180

Query: 181 EKWNEQRENGTFPGPL 196
           EKWNEQRENG FPGPL
Sbjct: 181 EKWNEQRENGCFPGPL 182

[Close]

BLAST of CSPI02G21180 vs. TAIR 10
Match: AT1G22450.1 (cytochrome C oxidase 6B )

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-44
Identity = 105/201 (52.24%), Postives = 139/201 (69.15%), Query Frame = 0


Query: 1   MAEAQSQQTPSLSEQYSLKEKEEKVDIPQPSEVKEV--ENSENAAPAEVVVKNDEPPVE- 60
           MA+A + QTPSLSEQY L+++ ++    +P EVKEV  E +  A   +     +E PVE 
Sbjct: 1   MADAVNAQTPSLSEQYHLEKEVKQDTSAKPVEVKEVAPEVTTQAEEVKTEQAKEESPVEE 60

Query: 61  ---AVADQSSDIPPAEESNGDSSAAAVEDSETSPAAENDSGAAEEESSGAGEEENSGDQE 120
               V ++S   P + E   ++ AAA +++E +PA      AAEE +     +EN+ ++ 
Sbjct: 61  AVSVVEEKSESAPESTEVASEAPAAAEDNAEETPA------AAEENN-----DENASEEV 120

Query: 121 STDERPEIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLC 180
           + +   EIKLETAP DFRFPTTNQTRHCFTRY+E+HRC  AKG+ APEC+KFAK+YRSLC
Sbjct: 121 AEETPDEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLC 180

Query: 181 PSEWVEKWNEQRENGTFPGPL 196
           PSEWV++WNEQRENGTFPGPL
Sbjct: 181 PSEWVDRWNEQRENGTFPGPL 190

[Close]

BLAST of CSPI02G21180 vs. TAIR 10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 150.6 bits (379), Expect = 1.3e-36
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 121 EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE 180
           EI+L+TAP DFRFPTTNQTRHCFTRYIEFHRCT AKGE A ECE+FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVD 63

Query: 181 KWNEQRENGTFPGPL 196
           KWNEQRE GTFPGPL
Sbjct: 64  KWNEQRETGTFPGPL 78

[Close]

BLAST of CSPI02G21180 vs. TAIR 10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 148.3 bits (373), Expect = 6.5e-36
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 121 EIKLETAPVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVE 180
           EI+L+TAP DFRFPTTNQTRHCFTRYIEFHRCT AKGE + +CE+FAKYYR+LCP EWV+
Sbjct: 4   EIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVD 63

Query: 181 KWNEQRENGTFPGPL 196
           KWNEQRE+GTFPGPL
Sbjct: 64  KWNEQRESGTFPGPL 78

[Close]

BLAST of CSPI02G21180 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 68.6 bits (166), Expect = 6.6e-12
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 127 APVDFRFPTTNQTRHCFTRYIEFHRCTQAKGEGAPECEKFAKYYRSLCPSEWVEK-WNEQ 186
           A V+ RFP TN+TRHCF R++++H+C +  G  A +C     Y RS+CP E V K W + 
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118

Query: 187 REN 189
             N
Sbjct: 119 GRN 121

The following BLAST results are available for this feature:

BLAST of CSPI02G21180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7L9	1.4e-43	52.24	Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=...	[more]
Q9SUD3	1.8e-35	85.33	Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=...	[more]
Q945L0	9.2e-35	82.67	Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=...	[more]
O94581	2.6e-21	52.38	Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (str...	[more]
Q4R374	2.3e-17	51.35	Cytochrome c oxidase subunit 6B1 OS=Macaca fascicularis OX=9541 GN=COX6B1 PE=3 S...	[more]

BLAST of CSPI02G21180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNV6	1.2e-98	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G369100 PE=4 SV=1	[more]
A0A5A7VCW9	6.9e-86	90.82	Cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BC78	6.9e-86	90.82	cytochrome c oxidase subunit 6b-1-like OS=Cucumis melo OX=3656 GN=LOC103488079 P...	[more]
A0A6J1HH76	2.2e-76	81.12	cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1KAZ5	2.9e-76	81.12	cytochrome c oxidase subunit 6b-1-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]

BLAST of CSPI02G21180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152624.1	2.5e-98	100.00	cytochrome c oxidase subunit 6b-1 [Cucumis sativus] >KGN62709.1 hypothetical pro...	[more]
XP_038886001.1	1.3e-86	89.80	cytochrome c oxidase subunit 6b-1-like [Benincasa hispida]	[more]
XP_008444857.1	1.4e-85	90.82	PREDICTED: cytochrome c oxidase subunit 6b-1-like [Cucumis melo] >KAA0065134.1 c...	[more]
XP_023547029.1	4.2e-77	82.14	cytochrome c oxidase subunit 6b-1-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAG6598699.1	4.2e-77	82.14	Cytochrome c oxidase subunit 6b-1, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI02G21180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22450.1	1.0e-44	52.24	cytochrome C oxidase 6B	[more]
AT4G28060.1	1.3e-36	85.33	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G57815.1	6.5e-36	82.67	Cytochrome c oxidase, subunit Vib family protein	[more]
AT1G32710.1	6.6e-12	44.44	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..33
None	No IPR available	PANTHER	PTHR46281	CYTOCHROME C OXIDASE SUBUNIT 6B	coord: 1..125
None	No IPR available	PANTHER	PTHR46281:SF10	CYTOCHROME C OXIDASE SUBUNIT 6B-1	coord: 1..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G21180.1	CSPI02G21180.1	mRNA
CSPI02G21180.2	CSPI02G21180.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV