CSPI02G19990 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G19990
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 17882629 .. 17884019 (-)
RNA-Seq Expression	CSPI02G19990
Synteny	CSPI02G19990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTTCCTGGATTACAAGGCTTCGTAACACGTGGGCCAATAAAATTGATAACGGGCCTAACGCCGTGCCACGAACCGCGCTATGGTTCCGGTCATTGTCACCAACCTTTGAGCGTCAACGCTCTGTTCTTGCGCCAAAACGTACTTTTTGTTAATGGATAAGATCGATGTCTCCCATATTTTTCCCATCTTCTCTTCTCTTCTCTTTTCTGTCAGTTTTTACTTCTTGGGGTAATTTCCCATCACTTTCTTCAGAAAAACGGGTGGTTTTCGTTCTCACTTCCAACCCTCTCCACAAGCTTGTGGATAGTGATCCCGTTTTCATACTTTTTCCTGTAGACCCACCTCTATGCCTCAGCTTAATTTCGATTAATAATCATTTCTAAGCGTCAGAATTTCAATTGGGTAACGAGGGACCCGGTAATTTGTTTGTGTGGTGGGTGCTGCCTAATCGCTCTTGGGTTGGAATCAAAAGCTTTAATCGTGTAACTTTGAAAGCGATTTGAGGACACTCTTCGAACAAGCAGAAGGATTTCTATAGATATTAGTCTTTTTCGAGATTTTGATTGCTGGATTCTGACGTGTGAGTTTATTTTTCTACGTATTTATCCAACTGTGAAAGGGGGTTTTAATTTATTTCTCTGTTTCTTATTTTTTAATTTTATTTTTGGGTTCGATGTAATTCTGAAGCAATACAGACCAAGGGTTTCTTGGCTGGTTCTATCTCGTGTGATGTGGGTTTGTTGGATTTGCTGGAGGCTGGCTGGTTCTTGGAGGAGACGATCAGTACAGAAATTTTGAGCCAAAACGTTTGTCAGGTTAGTAAGAAGTTCAATTTGATCAAATTTAGCCAATAAGAGATCTGGGTCTTTTCTTTTCCATTAGAACTATTTGGGATTAGTGAATTGGCAATATGTAAGTTCGTGGTTGGGTGGATTCGCTTTCTGCTAACGGCCTCTGTATTTCCAAATCTAAGGAGTTTCATCTGTAATTTCTTAGTTGATCTCTCTTTCAATTTGCTTACATCCAGAGGTCATAACTTATAAGTATACTACTGATGAAATTCGTTACGTAGTCTGTTTCTTATCCTCTTTGTTTGGATACTTGGATCTCATTCAACTGGTGTTGGTTGGGGTTGGTTTTGCCATTTGATTTGAGTTTGCCTGAATTAGAACTTCTTTTATTTTGATTTCGACTCCTCTTAATTTAAGAGTTTTCTATTCCTGAATTTTCTATTGATGAACTTGATTACCTGTCGTTGTGGATGCATGCATATGGTGCTCATCGTTTGGAATTGAGACTTTCTGTTTGTTTTTCTTTACTTAAAAGAAAAGATCAATTTTTTTCTTATTTTAATGGTATTAGCAATATGTATGTTTCAGGGTTGA

mRNA sequence

ATGGGCTTTCCTGGATTACAAGGCTTCGTAACACGTGGGCCAATAAAATTGATAACGGGCCTAACGCCGTGCCACGAACCGCGCTATGGTTCCGTTTTTACTTCTTGGGGTAATTTCCCATCACTTTCTTCAGAAAAACGGGTGGTTTTCGTTCTCACTTCCAACCCTCTCCACAAGCTTGTGGATAGTGATCCCGTTTTCATACTTTTTCCTACCAAGGGTTTCTTGGCTGGTTCTATCTCGTGTGATGTGGGTTTGTTGGATTTGCTGGAGGCTGGCTGGTTCTTGGAGGAGACGATCAGTACAGAAATTTTGAGCCAAAACGTTTGTCAGGGTTGA

Coding sequence (CDS)

ATGGGCTTTCCTGGATTACAAGGCTTCGTAACACGTGGGCCAATAAAATTGATAACGGGCCTAACGCCGTGCCACGAACCGCGCTATGGTTCCGTTTTTACTTCTTGGGGTAATTTCCCATCACTTTCTTCAGAAAAACGGGTGGTTTTCGTTCTCACTTCCAACCCTCTCCACAAGCTTGTGGATAGTGATCCCGTTTTCATACTTTTTCCTACCAAGGGTTTCTTGGCTGGTTCTATCTCGTGTGATGTGGGTTTGTTGGATTTGCTGGAGGCTGGCTGGTTCTTGGAGGAGACGATCAGTACAGAAATTTTGAGCCAAAACGTTTGTCAGGGTTGA

Protein sequence

MGFPGLQGFVTRGPIKLITGLTPCHEPRYGSVFTSWGNFPSLSSEKRVVFVLTSNPLHKLVDSDPVFILFPTKGFLAGSISCDVGLLDLLEAGWFLEETISTEILSQNVCQG*

Homology

[Close]

BLAST of CSPI02G19990 vs. ExPASy TrEMBL
Match: A0A0A0LL17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361600 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.0e-28
Identity = 74/112 (66.07%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 1   MGFPGLQGFVTRGPIKLITGLTPCHEPRYGSVFTSWGNFPSLSSEKRVVFVLTSNPLHKL 60
           MGFPGLQGFVTRGPI+L TGLTPCHEPRYGS           +SE             +L
Sbjct: 1   MGFPGLQGFVTRGPIQLTTGLTPCHEPRYGS-----------ASE------------FQL 60

Query: 61  VDSDPVFILFPTKGFLAGSISCDVGLLDLLEAGWFLEETISTEILSQNVCQG 113
            +  P      TKGFLAGSISCDVGLLDLLEAGWFLEETISTEILSQNVCQG
Sbjct: 61  GNEGPA---IHTKGFLAGSISCDVGLLDLLEAGWFLEETISTEILSQNVCQG 86

[Close]

BLAST of CSPI02G19990 vs. NCBI nr
Match: KGN62595.1 (hypothetical protein Csa_022197 [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.1e-28
Identity = 74/112 (66.07%), Postives = 78/112 (69.64%), Query Frame = 0


Query: 1   MGFPGLQGFVTRGPIKLITGLTPCHEPRYGSVFTSWGNFPSLSSEKRVVFVLTSNPLHKL 60
           MGFPGLQGFVTRGPI+L TGLTPCHEPRYGS           +SE             +L
Sbjct: 1   MGFPGLQGFVTRGPIQLTTGLTPCHEPRYGS-----------ASE------------FQL 60

Query: 61  VDSDPVFILFPTKGFLAGSISCDVGLLDLLEAGWFLEETISTEILSQNVCQG 113
            +  P      TKGFLAGSISCDVGLLDLLEAGWFLEETISTEILSQNVCQG
Sbjct: 61  GNEGPA---IHTKGFLAGSISCDVGLLDLLEAGWFLEETISTEILSQNVCQG 86

The following BLAST results are available for this feature:

BLAST of CSPI02G19990 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G19990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL17	1.0e-28	66.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G361600 PE=4 SV=1	[more]

BLAST of CSPI02G19990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62595.1	2.1e-28	66.07	hypothetical protein Csa_022197 [Cucumis sativus]	[more]

BLAST of CSPI02G19990 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G19990.1	CSPI02G19990.1	mRNA