CSPI02G19210 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G19210
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionEF-hand domain-containing protein
LocationChr2: 17522331 .. 17522522 (-)
RNA-Seq ExpressionCSPI02G19210
SyntenyCSPI02G19210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCCCTAAGCTCTACGGGGTTTATGATCAATTCATTCCAGAAAGCTTTCTATGGGATGGCTTTTGCTGACAAAGATGGTGATGGTTTCTGTGATGAAAACGAGTTGGAGAAACTCGTCGACCATGTCATGAGGTTTAATAATGCAAAGCAACGGCAGGATGATAAATCAAATCGATCGACCAAGTAA

mRNA sequence

ATGCAAGCCCTAAGCTCTACGGGGTTTATGATCAATTCATTCCAGAAAGCTTTCTATGGGATGGCTTTTGCTGACAAAGATGGTGATGGTTTCTGTGATGAAAACGAGTTGGAGAAACTCGTCGACCATGTCATGAGGTTTAATAATGCAAAGCAACGGCAGGATGATAAATCAAATCGATCGACCAAGTAA

Coding sequence (CDS)

ATGCAAGCCCTAAGCTCTACGGGGTTTATGATCAATTCATTCCAGAAAGCTTTCTATGGGATGGCTTTTGCTGACAAAGATGGTGATGGTTTCTGTGATGAAAACGAGTTGGAGAAACTCGTCGACCATGTCATGAGGTTTAATAATGCAAAGCAACGGCAGGATGATAAATCAAATCGATCGACCAAGTAA

Protein sequence

MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSNRSTK*
Homology
BLAST of CSPI02G19210 vs. ExPASy TrEMBL
Match: A0A0A0LNG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358890 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSNR 60
          MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKS+R
Sbjct: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSSR 60

Query: 61 STK 64
          STK
Sbjct: 61 STK 63

BLAST of CSPI02G19210 vs. ExPASy TrEMBL
Match: A0A5A7V5A0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00220 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 15 QKAFYGMAFADKDGDGFCD-ENELEKLVDHVMRFNNAKQRQDDKSNRST 63
          +KA YG+AF+DKDG    D ENELEKLVD++MRF+  K++QDDKS++ST
Sbjct: 14 EKAHYGIAFSDKDGLHLIDQENELEKLVDYLMRFSAGKKKQDDKSSQST 62

BLAST of CSPI02G19210 vs. ExPASy TrEMBL
Match: A0A0A0LRC3 (EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.2e-06
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCD--ENELEKLVDHVMRFNNAKQRQDDKS 59
          MQAL+S G M+ SFQKA YG+AFADKDGDG  D    E++ LVD+VMRF  +K    D S
Sbjct: 36 MQALNSMGVMM-SFQKAHYGVAFADKDGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDAS 94

BLAST of CSPI02G19210 vs. ExPASy TrEMBL
Match: A0A5A7V4S6 (Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00280 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 8.8e-06
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCD---ENELEKLVDHVMRFNNAK 52
          MQAL+S G ++ SFQKA YG++ ADKDGDG  D   E+ELEKLVD+VMRF   +
Sbjct: 36 MQALNSMGALM-SFQKAHYGVSHADKDGDGKVDLTREDELEKLVDYVMRFQTPR 88

BLAST of CSPI02G19210 vs. ExPASy TrEMBL
Match: A0A0A0LNG3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.8e-05
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCD--ENELEKLVDHVMRFNNAKQRQDDK 58
          MQAL+S G M+ SFQKA YG++ ADKDGDG  D  E E+E L+D+VMRF   +  +  K
Sbjct: 36 MQALNSMGSMM-SFQKAHYGVSHADKDGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPK 93

BLAST of CSPI02G19210 vs. NCBI nr
Match: KGN62519.1 (hypothetical protein Csa_022451 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSNR 60
          MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKS+R
Sbjct: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCDENELEKLVDHVMRFNNAKQRQDDKSSR 60

Query: 61 STK 64
          STK
Sbjct: 61 STK 63

BLAST of CSPI02G19210 vs. NCBI nr
Match: KAA0060889.1 (hypothetical protein E6C27_scaffold501G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.7e-06
Identity = 31/49 (63.27%), Postives = 41/49 (83.67%), Query Frame = 0

Query: 15 QKAFYGMAFADKDGDGFCD-ENELEKLVDHVMRFNNAKQRQDDKSNRST 63
          +KA YG+AF+DKDG    D ENELEKLVD++MRF+  K++QDDKS++ST
Sbjct: 14 EKAHYGIAFSDKDGLHLIDQENELEKLVDYLMRFSAGKKKQDDKSSQST 62

BLAST of CSPI02G19210 vs. NCBI nr
Match: KGN62521.1 (hypothetical protein Csa_021806 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.1e-05
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 0

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCD--ENELEKLVDHVMRFNNAKQRQDDKS 59
          MQAL+S G M+ SFQKA YG+AFADKDGDG  D    E++ LVD+VMRF  +K    D S
Sbjct: 36 MQALNSMGVMM-SFQKAHYGVAFADKDGDGAVDLEGGEIDSLVDYVMRFQASKDVPKDAS 94

BLAST of CSPI02G19210 vs. NCBI nr
Match: KAA0060895.1 (putative calcium-binding protein CML10 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-05
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 0

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCD---ENELEKLVDHVMRFNNAK 52
          MQAL+S G ++ SFQKA YG++ ADKDGDG  D   E+ELEKLVD+VMRF   +
Sbjct: 36 MQALNSMGALM-SFQKAHYGVSHADKDGDGKVDLTREDELEKLVDYVMRFQTPR 88

BLAST of CSPI02G19210 vs. NCBI nr
Match: KGN62514.1 (hypothetical protein Csa_021819 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 2.0e-04
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 0

Query: 1  MQALSSTGFMINSFQKAFYGMAFADKDGDGFCD--ENELEKLVDHVMRFNNAKQRQDDK 58
          MQAL+S G M+ SFQKA YG++ ADKDGDG  D  E E+E L+D+VMRF   +  +  K
Sbjct: 36 MQALNSMGSMM-SFQKAHYGVSHADKDGDGKVDLGEAEMENLIDYVMRFQTPRAPKTPK 93

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LNG52.6e-2698.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G358890 PE=4 SV=1[more]
A0A5A7V5A01.8e-0663.27Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LRC35.2e-0658.33EF-hand domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G359900 PE=... [more]
A0A5A7V4S68.8e-0661.11Putative calcium-binding protein CML10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A0A0LNG39.8e-0554.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G357860 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN62519.15.4e-2698.41hypothetical protein Csa_022451 [Cucumis sativus][more]
KAA0060889.13.7e-0663.27hypothetical protein E6C27_scaffold501G00220 [Cucumis melo var. makuwa][more]
KGN62521.11.1e-0558.33hypothetical protein Csa_021806 [Cucumis sativus][more]
KAA0060895.11.8e-0561.11putative calcium-binding protein CML10 [Cucumis melo var. makuwa][more]
KGN62514.12.0e-0454.24hypothetical protein Csa_021819 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 25..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G19210.1CSPI02G19210.1mRNA