CSPI02G18930 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G18930
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 17338488 .. 17338732 (-)
RNA-Seq ExpressionCSPI02G18930
SyntenyCSPI02G18930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCGAGTCGCTCTAACCCTCAAAGCATCTGAGGTTGACCCTTCTGCCACCATCGTGATTGCCAAGATTATCGGTAGCAGTCATATCCACACAGTAATGAGAAAAAAATTCAGGCTGAGTCAAGAGAAATTTTATTTTTGTTTCTTACAGTAAAGTACCAAAGGAGACCATCCAAATCTAAAGTGGGGGATAAGCCACCATCCAAATCTAAGCCAAGGGTTACGAAAAAGATTTATCAATGA

mRNA sequence

ATGATTCGAGTCGCTCTAACCCTCAAAGCATCTGAGGTTGACCCTTCTGCCACCATCGTGATTGCCAAGATTATCGTAAAGTACCAAAGGAGACCATCCAAATCTAAAGTGGGGGATAAGCCACCATCCAAATCTAAGCCAAGGGTTACGAAAAAGATTTATCAATGA

Coding sequence (CDS)

ATGATTCGAGTCGCTCTAACCCTCAAAGCATCTGAGGTTGACCCTTCTGCCACCATCGTGATTGCCAAGATTATCGTAAAGTACCAAAGGAGACCATCCAAATCTAAAGTGGGGGATAAGCCACCATCCAAATCTAAGCCAAGGGTTACGAAAAAGATTTATCAATGA

Protein sequence

MIRVALTLKASEVDPSATIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ*
Homology
[Close]
BLAST of CSPI02G18930 vs. ExPASy TrEMBL
Match: A0A0A0LL63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356620 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MIRVALTLKASEVDPSATIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ 56
          MIRVALTLKASEVDPS TIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ
Sbjct: 1  MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ 55

[Close]
BLAST of CSPI02G18930 vs. NCBI nr
Match: KGN62488.1 (hypothetical protein Csa_018758 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.1e-18
Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 0 

Query: 1  MIRVALTLKASEVDPSATIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ 56
          MIRVALTLKASEVDPS TIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ
Sbjct: 1  MIRVALTLKASEVDPSTTIVIAKIIVKYQRRPSKSKVGDKPPSKSKPRVTKKIYQ 55

The following BLAST results are available for this feature:
BLAST of CSPI02G18930 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G18930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL631.0e-1898.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356620 PE=4 SV=1[more]
BLAST of CSPI02G18930 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62488.12.1e-1898.18hypothetical protein Csa_018758 [Cucumis sativus][more]
BLAST of CSPI02G18930 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G18930.1CSPI02G18930.1mRNA