CSPI02G17950 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G17950
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	LOB domain-containing protein
Location	Chr2: 16752196 .. 16753281 (+)
RNA-Seq Expression	CSPI02G17950
Synteny	CSPI02G17950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCAGTTACGTTCTTTCTCTCCTTCTCAGTTTTTTCTTCTCCGACTTTTCATCTGCCATGAATATTCTACAAGATTGCACCGAAACCGTCGCCGACGGAGCCGAAGTCATGGACATCAATTTCCCAACAACCACTCAGGCGCCTGCTTGTGCTGCCTGCAAATTCCATAGAAGAAAATGCTCTGTCGAATGTCCCTTGGCTCCCTATTTTCCTGCTAATCGTCTTCAAGATTTCGAAAACGTACGCAAATTGTTCGGCGTAAAAAACGTCCTCAAAACCCTAGCCGGTTTGGATTCTTATAACAGATTTAAAGCGGCGGAGTGTATGATTTTTGAAGCCAATTGTCGCGCCCTTGATCTCGTCGGTGGTTGTTGCCAAATCATCCCTAGATTGCAGAATGAAATTGCACTTCTAGAGGCTCAGCATCGTCACATTCTCCGTCAGCTCCAAATCTCCCGACAGACGGCGGCGGCTATTTCGCAACTAGGTGCGATTCCTTCGGAATTCGATTCTGATTGTAAGCACGGACTAACTCCTCTTTTGCTTGATTGCGATTATTCTGAAGATTGGATACGAAAAGAACATTGCGACATGAATAATGAAGCTTCTTTTTCCAAAGCCCTAACTAATTAGGGCATTCTTAGTTTTAGATTATAATGTTTCTTTCTTCTTTAGTTTCGATCTTGAAACACAGATAAGATTATGATTTCAATACGTTGCAAACAAAAAAATCTTTAACTTATTTACTTTTGATTTTCTATACTGATTGGTTCATGTTTGGTATGTGTGTTATTATTATTATTCTTTTTATGAAAAACAGAACAAAGAACTACACAATTACGATCATAGAAAATCATACGAAATGAGGAGCAACAAAGACGGAAAGACTCACGCTCTCCACTACTACTACAACTCTATACCTAAAGGTGCATATATGAATATTATTACTATATCATCTATAAACAATTGTTATCCTCCTTGTAGTCTGATGCTTTTCTGATCAAATCATACGTTCGTATAACTCCGTCATTTACTCTCTCCCTCTCTCTCTTTTTTATTTCAATTTCAAAATCTTCCATTAAAC

mRNA sequence

GGTTCAGTTACGTTCTTTCTCTCCTTCTCAGTTTTTTCTTCTCCGACTTTTCATCTGCCATGAATATTCTACAAGATTGCACCGAAACCGTCGCCGACGGAGCCGAAGTCATGGACATCAATTTCCCAACAACCACTCAGGCGCCTGCTTGTGCTGCCTGCAAATTCCATAGAAGAAAATGCTCTGTCGAATGTCCCTTGGCTCCCTATTTTCCTGCTAATCGTCTTCAAGATTTCGAAAACGTACGCAAATTGTTCGGCGTAAAAAACGTCCTCAAAACCCTAGCCGGTTTGGATTCTTATAACAGATTTAAAGCGGCGGAGTGTATGATTTTTGAAGCCAATTGTCGCGCCCTTGATCTCGTCGGTGGTTGTTGCCAAATCATCCCTAGATTGCAGAATGAAATTGCACTTCTAGAGGCTCAGCATCGTCACATTCTCCGTCAGCTCCAAATCTCCCGACAGACGGCGGCGGCTATTTCGCAACTAGGTGCGATTCCTTCGGAATTCGATTCTGATTAACAAAGAACTACACAATTACGATCATAGAAAATCATACGAAATGAGGAGCAACAAAGACGGAAAGACTCACGCTCTCCACTACTACTACAACTCTATACCTAAAGGTGCATATATGAATATTATTACTATATCATCTATAAACAATTGTTATCCTCCTTGTAGTCTGATGCTTTTCTGATCAAATCATACGTTCGTATAACTCCGTCATTTACTCTCTCCCTCTCTCTCTTTTTTATTTCAATTTCAAAATCTTCCATTAAAC

Coding sequence (CDS)

ATGAATATTCTACAAGATTGCACCGAAACCGTCGCCGACGGAGCCGAAGTCATGGACATCAATTTCCCAACAACCACTCAGGCGCCTGCTTGTGCTGCCTGCAAATTCCATAGAAGAAAATGCTCTGTCGAATGTCCCTTGGCTCCCTATTTTCCTGCTAATCGTCTTCAAGATTTCGAAAACGTACGCAAATTGTTCGGCGTAAAAAACGTCCTCAAAACCCTAGCCGGTTTGGATTCTTATAACAGATTTAAAGCGGCGGAGTGTATGATTTTTGAAGCCAATTGTCGCGCCCTTGATCTCGTCGGTGGTTGTTGCCAAATCATCCCTAGATTGCAGAATGAAATTGCACTTCTAGAGGCTCAGCATCGTCACATTCTCCGTCAGCTCCAAATCTCCCGACAGACGGCGGCGGCTATTTCGCAACTAGGTGCGATTCCTTCGGAATTCGATTCTGATTAA

Protein sequence

MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTAAAISQLGAIPSEFDSD*

Homology

[Close]

BLAST of CSPI02G17950 vs. ExPASy Swiss-Prot
Match: Q9STS6 (LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-17
Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 30  ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAEC 89
           ACAACK+ RR+C+ +CPLAPYFPA + + F+NV +LFGV++++K L  LD   + +A + 
Sbjct: 36  ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKS 95

Query: 90  MIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISR 135
           +IF++  R    V GC  +  +LQ  I   E + + +  QLQ+ R
Sbjct: 96  IIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQLYR 140

[Close]

BLAST of CSPI02G17950 vs. ExPASy Swiss-Prot
Match: Q9LRW1 (LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 30  ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAEC 89
           ACAACK+ RRKC+ +C LAPYFP +R + F N  KLFGV N+ K +  L    +  A   
Sbjct: 36  ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHT 95

Query: 90  MIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
           ++F+++ RA D V GC  II +LQ +I     +   +L+QL + R  A
Sbjct: 96  IMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRA 143

[Close]

BLAST of CSPI02G17950 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 8.4e-17
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 28  APACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAA 87
           A  CAACK  RR+C+ +C  +PYFPA+  Q F NV ++FG  NV K L  L  + R  A 
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 88  ECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQ 123
             M++EAN R  D V GC   I  LQ +I +L+AQ
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQ 105

[Close]

BLAST of CSPI02G17950 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.3e-16
Identity = 51/114 (44.74%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 24  TTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNR 83
           ++T +P CAACKF RRKC  EC  APYFP ++ Q F NV K+FG  NV K L  L    R
Sbjct: 4   SSTNSP-CAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQR 63

Query: 84  FKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
             A   + +EA+ R  D V GC  +I  LQ           H LRQLQI    A
Sbjct: 64  EDAVNSLAYEADMRLRDPVYGCVGVISLLQ-----------HQLRQLQIDLSCA 105

[Close]

BLAST of CSPI02G17950 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.3e-16
Identity = 50/136 (36.76%), Postives = 65/136 (47.79%), Query Frame = 0


Query: 10  TVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVK 69
           T+A  +     N         CAACKF RRKC  +C  APYFP +  Q F +V ++FG  
Sbjct: 18  TIASASASAAANTAACGTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGAS 77

Query: 70  NVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQ 129
           NV K L  L  Y R  A   + +EA+ R  D V GC  II  LQ  +  L+        +
Sbjct: 78  NVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFE 137

Query: 130 LQISRQTAAAISQLGA 146
           L   +Q AAA +   A
Sbjct: 138 LSKYQQAAAAAAAASA 153

[Close]

BLAST of CSPI02G17950 vs. ExPASy TrEMBL
Match: A0A0A0LNK6 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G351680 PE=3 SV=1)

HSP 1 Score: 397.1 bits (1019), Expect = 4.1e-107
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60
           MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE
Sbjct: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60

Query: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120
           NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE
Sbjct: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120

Query: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMN 180
           AQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMN
Sbjct: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMN 180

Query: 181 NEASFSKALTN 192
           NEASFSKALTN
Sbjct: 181 NEASFSKALTN 191

[Close]

BLAST of CSPI02G17950 vs. ExPASy TrEMBL
Match: A0A1S3B9X0 (LOB domain-containing protein 22-like OS=Cucumis melo OX=3656 GN=LOC103487781 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.6e-82
Identity = 160/194 (82.47%), Postives = 169/194 (87.11%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQ---APACAACKFHRRKCSVECPLAPYFPANRLQ 60
           MNI QDCTET ADG EV DINFPT  Q   A ACAACKFHRRKCSVECPLAPYFPANRL+
Sbjct: 1   MNIRQDCTETSADGGEVKDINFPTKIQAAAAAACAACKFHRRKCSVECPLAPYFPANRLR 60

Query: 61  DFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIA 120
           DFENVRKLFGVKNVLK LAGL+  NRFKA ECMIFEANCRA+DL GGC +II +LQ+EIA
Sbjct: 61  DFENVRKLFGVKNVLKILAGLEPDNRFKAVECMIFEANCRAIDLAGGCYKIISKLQSEIA 120

Query: 121 LLEAQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHC 180
           LLEAQHR IL QLQISRQTAAAISQ GAI SEFDSDCKHGLT LLLDCD SEDWIRKE+ 
Sbjct: 121 LLEAQHRLILHQLQISRQTAAAISQRGAIRSEFDSDCKHGLTSLLLDCDCSEDWIRKEYF 180

Query: 181 DMNNEASFSKALTN 192
           ++ NEASFSKALTN
Sbjct: 181 NL-NEASFSKALTN 193

[Close]

BLAST of CSPI02G17950 vs. ExPASy TrEMBL
Match: A0A5A7V0Z4 (LOB domain-containing protein 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001350 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 3.0e-81
Identity = 159/194 (81.96%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQ---APACAACKFHRRKCSVECPLAPYFPANRLQ 60
           MNI QDCTET ADG EV D NFPT  Q   A ACAACKFHRRKCSVECPLAPYFPANRL+
Sbjct: 1   MNIRQDCTETSADGGEVKDNNFPTKIQAAAAAACAACKFHRRKCSVECPLAPYFPANRLR 60

Query: 61  DFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIA 120
           DFENVRKLFGVKNVLK LAGL+  NRFKA ECMIFEANCRA+DL GGC +II +LQ+EIA
Sbjct: 61  DFENVRKLFGVKNVLKILAGLEPDNRFKAVECMIFEANCRAIDLAGGCYKIISKLQSEIA 120

Query: 121 LLEAQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHC 180
           LLEAQHR IL QLQISRQTAAAISQ GAI SEFDSDCKHGLT LLLDCD SEDWIRKE+ 
Sbjct: 121 LLEAQHRLILHQLQISRQTAAAISQRGAIRSEFDSDCKHGLTSLLLDCDCSEDWIRKEYF 180

Query: 181 DMNNEASFSKALTN 192
           ++ NEASFSKALTN
Sbjct: 181 NL-NEASFSKALTN 193

[Close]

BLAST of CSPI02G17950 vs. ExPASy TrEMBL
Match: A0A6J1K5C4 (LOB domain-containing protein 22-like OS=Cucurbita maxima OX=3661 GN=LOC111492440 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.0e-41
Identity = 106/199 (53.27%), Postives = 128/199 (64.32%), Query Frame = 0


Query: 1   MNILQDCTETVAD-GAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDF 60
           MNI +D +  VA   A+  ++N PT     ACAACKF RRKC+ +CPLAPYFPA+R ++F
Sbjct: 1   MNIHRDFSGIVAGVDADYKNLNLPT---MQACAACKFQRRKCTADCPLAPYFPADRFREF 60

Query: 61  ENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALL 120
            NVRKLFGVKNVLKTL  L+   R  A +C+IFEANCRA DL GGC +II ++Q EI LL
Sbjct: 61  RNVRKLFGVKNVLKTLGDLEPSKRRDAVQCIIFEANCRANDLAGGCYKIIAKMQREITLL 120

Query: 121 EAQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDM 180
           EAQHR +LRQL+  RQTAA      AI SEFD            D D+ ED IRKE C +
Sbjct: 121 EAQHRLVLRQLRFFRQTAAC-----AIRSEFD-----------FDFDF-EDRIRKESCSL 179

Query: 181 N-------NEASFSKALTN 192
           N       N  S SK +T+
Sbjct: 181 NERLTTMENGVSCSKGVTH 179

[Close]

BLAST of CSPI02G17950 vs. ExPASy TrEMBL
Match: A0A6J1HFG0 (LOB domain-containing protein 22-like OS=Cucurbita moschata OX=3662 GN=LOC111462953 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 5.6e-40
Identity = 100/181 (55.25%), Postives = 117/181 (64.64%), Query Frame = 0


Query: 1   MNILQDCTETVAD-GAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDF 60
           MNI +D +  VA   A+  + N PT     ACAACKF RRKC+ +CPLAPYFPA R ++F
Sbjct: 1   MNIHRDFSGIVAGVDADYKNQNPPT---MQACAACKFQRRKCTADCPLAPYFPAERFREF 60

Query: 61  ENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALL 120
            NVRKLFGVKNVLKTL  L+   R  A +C+IFEANCRA DL GGC +II ++Q EI LL
Sbjct: 61  RNVRKLFGVKNVLKTLGDLEPSKRRDAVQCIIFEANCRASDLAGGCYKIIAKMQREITLL 120

Query: 121 EAQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDM 180
           EAQHR +LRQL+  RQTAA      AI SEFD D               ED IRKE C +
Sbjct: 121 EAQHRLVLRQLRFYRQTAAC-----AIRSEFDFD--------------FEDRIRKESCSL 159

[Close]

BLAST of CSPI02G17950 vs. NCBI nr
Match: XP_011650178.1 (LOB domain-containing protein 22 [Cucumis sativus])

HSP 1 Score: 397.1 bits (1019), Expect = 8.5e-107
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60
           MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE
Sbjct: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60

Query: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120
           NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE
Sbjct: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120

Query: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMN 180
           AQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMN
Sbjct: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMN 180

Query: 181 NEASFSKALTN 192
           NEASFSKALTN
Sbjct: 181 NEASFSKALTN 191

[Close]

BLAST of CSPI02G17950 vs. NCBI nr
Match: XP_008444461.1 (PREDICTED: LOB domain-containing protein 22-like [Cucumis melo])

HSP 1 Score: 313.9 bits (803), Expect = 9.4e-82
Identity = 160/194 (82.47%), Postives = 169/194 (87.11%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQ---APACAACKFHRRKCSVECPLAPYFPANRLQ 60
           MNI QDCTET ADG EV DINFPT  Q   A ACAACKFHRRKCSVECPLAPYFPANRL+
Sbjct: 1   MNIRQDCTETSADGGEVKDINFPTKIQAAAAAACAACKFHRRKCSVECPLAPYFPANRLR 60

Query: 61  DFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIA 120
           DFENVRKLFGVKNVLK LAGL+  NRFKA ECMIFEANCRA+DL GGC +II +LQ+EIA
Sbjct: 61  DFENVRKLFGVKNVLKILAGLEPDNRFKAVECMIFEANCRAIDLAGGCYKIISKLQSEIA 120

Query: 121 LLEAQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHC 180
           LLEAQHR IL QLQISRQTAAAISQ GAI SEFDSDCKHGLT LLLDCD SEDWIRKE+ 
Sbjct: 121 LLEAQHRLILHQLQISRQTAAAISQRGAIRSEFDSDCKHGLTSLLLDCDCSEDWIRKEYF 180

Query: 181 DMNNEASFSKALTN 192
           ++ NEASFSKALTN
Sbjct: 181 NL-NEASFSKALTN 193

[Close]

BLAST of CSPI02G17950 vs. NCBI nr
Match: KAE8652052.1 (hypothetical protein Csa_018759 [Cucumis sativus])

HSP 1 Score: 312.8 bits (800), Expect = 2.1e-81
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60
           MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE
Sbjct: 1   MNILQDCTETVADGAEVMDINFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFE 60

Query: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120
           NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE
Sbjct: 61  NVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLE 120

Query: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 154
           AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD
Sbjct: 121 AQHRHILRQLQISRQTAAAISQLGAIPSEFDSD 153

[Close]

BLAST of CSPI02G17950 vs. NCBI nr
Match: KAA0061000.1 (LOB domain-containing protein 22-like [Cucumis melo var. makuwa])

HSP 1 Score: 311.2 bits (796), Expect = 6.1e-81
Identity = 159/194 (81.96%), Postives = 168/194 (86.60%), Query Frame = 0


Query: 1   MNILQDCTETVADGAEVMDINFPTTTQ---APACAACKFHRRKCSVECPLAPYFPANRLQ 60
           MNI QDCTET ADG EV D NFPT  Q   A ACAACKFHRRKCSVECPLAPYFPANRL+
Sbjct: 1   MNIRQDCTETSADGGEVKDNNFPTKIQAAAAAACAACKFHRRKCSVECPLAPYFPANRLR 60

Query: 61  DFENVRKLFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIA 120
           DFENVRKLFGVKNVLK LAGL+  NRFKA ECMIFEANCRA+DL GGC +II +LQ+EIA
Sbjct: 61  DFENVRKLFGVKNVLKILAGLEPDNRFKAVECMIFEANCRAIDLAGGCYKIISKLQSEIA 120

Query: 121 LLEAQHRHILRQLQISRQTAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHC 180
           LLEAQHR IL QLQISRQTAAAISQ GAI SEFDSDCKHGLT LLLDCD SEDWIRKE+ 
Sbjct: 121 LLEAQHRLILHQLQISRQTAAAISQRGAIRSEFDSDCKHGLTSLLLDCDCSEDWIRKEYF 180

Query: 181 DMNNEASFSKALTN 192
           ++ NEASFSKALTN
Sbjct: 181 NL-NEASFSKALTN 193

[Close]

BLAST of CSPI02G17950 vs. NCBI nr
Match: XP_038886742.1 (LOB domain-containing protein 22-like [Benincasa hispida])

HSP 1 Score: 241.1 bits (614), Expect = 7.8e-60
Identity = 129/188 (68.62%), Postives = 143/188 (76.06%), Query Frame = 0


Query: 6   DCTETVADGAEVMDI-NFPTTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRK 65
           DC+ T A+  EV D  N P+T    ACAACKF RRKCS +CPLAPYFPA+RLQDF+NVRK
Sbjct: 7   DCSGTAAEEGEVKDNGNLPST----ACAACKFQRRKCSADCPLAPYFPAHRLQDFQNVRK 66

Query: 66  LFGVKNVLKTLAGLDSYNRFKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHR 125
           LFGVKNVLKTLA L+  NRFKA ECMIFEANCRA DL GGC +II +LQ+EI LLEAQHR
Sbjct: 67  LFGVKNVLKTLADLEPDNRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLEAQHR 126

Query: 126 HILRQLQISRQ-TAAAISQLGAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMNNEA 185
            +LRQL+  RQ TAAAISQ G+I SE D DCK GLT LLLDCDY  D +      M NE 
Sbjct: 127 AVLRQLRFFRQTTAAAISQRGSILSELDFDCKPGLTSLLLDCDYLSDRLNM----MENEV 186

Query: 186 SFSKALTN 192
           SF KALTN
Sbjct: 187 SFPKALTN 186

[Close]

BLAST of CSPI02G17950 vs. TAIR 10
Match: AT3G47870.1 (LOB domain-containing protein 27 )

HSP 1 Score: 91.3 bits (225), Expect = 9.3e-19
Identity = 44/105 (41.90%), Postives = 68/105 (64.76%), Query Frame = 0


Query: 30  ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAEC 89
           ACAACK+ RR+C+ +CPLAPYFPA + + F+NV +LFGV++++K L  LD   + +A + 
Sbjct: 36  ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKS 95

Query: 90  MIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISR 135
           +IF++  R    V GC  +  +LQ  I   E + + +  QLQ+ R
Sbjct: 96  IIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQLYR 140

[Close]

BLAST of CSPI02G17950 vs. TAIR 10
Match: AT3G13850.1 (LOB domain-containing protein 22 )

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-18
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 30  ACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAAEC 89
           ACAACK+ RRKC+ +C LAPYFP +R + F N  KLFGV N+ K +  L    +  A   
Sbjct: 36  ACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHT 95

Query: 90  MIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
           ++F+++ RA D V GC  II +LQ +I     +   +L+QL + R  A
Sbjct: 96  IMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFRDRA 143

[Close]

BLAST of CSPI02G17950 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-18
Identity = 44/95 (46.32%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 28  APACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRFKAA 87
           A  CAACK  RR+C+ +C  +PYFPA+  Q F NV ++FG  NV K L  L  + R  A 
Sbjct: 11  ASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAV 70

Query: 88  ECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQ 123
             M++EAN R  D V GC   I  LQ +I +L+AQ
Sbjct: 71  SSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQ 105

[Close]

BLAST of CSPI02G17950 vs. TAIR 10
Match: AT1G65620.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-17
Identity = 51/114 (44.74%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 24  TTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNR 83
           ++T +P CAACKF RRKC  EC  APYFP ++ Q F NV K+FG  NV K L  L    R
Sbjct: 4   SSTNSP-CAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQR 63

Query: 84  FKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
             A   + +EA+ R  D V GC  +I  LQ           H LRQLQI    A
Sbjct: 64  EDAVNSLAYEADMRLRDPVYGCVGVISLLQ-----------HQLRQLQIDLSCA 105

[Close]

BLAST of CSPI02G17950 vs. TAIR 10
Match: AT1G65620.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 85.1 bits (209), Expect = 6.6e-17
Identity = 51/114 (44.74%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 24  TTTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNR 83
           ++T +P CAACKF RRKC  EC  APYFP ++ Q F NV K+FG  NV K L  L    R
Sbjct: 4   SSTNSP-CAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQR 63

Query: 84  FKAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQTA 138
             A   + +EA+ R  D V GC  +I  LQ           H LRQLQI    A
Sbjct: 64  EDAVNSLAYEADMRLRDPVYGCVGVISLLQ-----------HQLRQLQIDLSCA 105

The following BLAST results are available for this feature:

BLAST of CSPI02G17950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STS6	1.3e-17	41.90	LOB domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=LBD27 PE=1 S...	[more]
Q9LRW1	2.2e-17	42.59	LOB domain-containing protein 22 OS=Arabidopsis thaliana OX=3702 GN=LBD22 PE=2 S...	[more]
Q9SHE9	8.4e-17	46.32	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
O04479	9.3e-16	44.74	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
A2WXT0	9.3e-16	36.76	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]

BLAST of CSPI02G17950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNK6	4.1e-107	100.00	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G351680 PE=3 SV...	[more]
A0A1S3B9X0	4.6e-82	82.47	LOB domain-containing protein 22-like OS=Cucumis melo OX=3656 GN=LOC103487781 PE...	[more]
A0A5A7V0Z4	3.0e-81	81.96	LOB domain-containing protein 22-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1K5C4	1.0e-41	53.27	LOB domain-containing protein 22-like OS=Cucurbita maxima OX=3661 GN=LOC11149244...	[more]
A0A6J1HFG0	5.6e-40	55.25	LOB domain-containing protein 22-like OS=Cucurbita moschata OX=3662 GN=LOC111462...	[more]

BLAST of CSPI02G17950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011650178.1	8.5e-107	100.00	LOB domain-containing protein 22 [Cucumis sativus]	[more]
XP_008444461.1	9.4e-82	82.47	PREDICTED: LOB domain-containing protein 22-like [Cucumis melo]	[more]
KAE8652052.1	2.1e-81	100.00	hypothetical protein Csa_018759 [Cucumis sativus]	[more]
KAA0061000.1	6.1e-81	81.96	LOB domain-containing protein 22-like [Cucumis melo var. makuwa]	[more]
XP_038886742.1	7.8e-60	68.62	LOB domain-containing protein 22-like [Benincasa hispida]	[more]

BLAST of CSPI02G17950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47870.1	9.3e-19	41.90	LOB domain-containing protein 27	[more]
AT3G13850.1	1.6e-18	42.59	LOB domain-containing protein 22	[more]
AT1G31320.1	6.0e-18	46.32	LOB domain-containing protein 4	[more]
AT1G65620.1	6.6e-17	44.74	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G65620.2	6.6e-17	44.74	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 109..129
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 25..137
None	No IPR available	PANTHER	PTHR31301:SF21	LOB DOMAIN-CONTAINING PROTEIN 27-RELATED	coord: 25..137
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 30..124 e-value: 1.3E-29 score: 102.7
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 29..130 score: 20.430012

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G17950.2	CSPI02G17950.2	mRNA
CSPI02G17950.1	CSPI02G17950.1	mRNA