CSPI02G17560 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G17560
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	VQ motif-containing protein 20-like
Location	Chr2: 16524135 .. 16524874 (+)
RNA-Seq Expression	CSPI02G17560
Synteny	CSPI02G17560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATGAAATTAGGAATGATTTTGAAGAAACCCTAAATCGAGAATGCCAATAAACCATGGAAAGAGGGATAATCAAACCAACAACAATGCCAATAAACCATTGTCTCCACCGCCGTTATTGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCTTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCCTCTTCCACTACCTCTCTTCTCAATGGCGTTATTCCCACCGCTGCCGCTAAGCCGCCTCAACGACATCCAGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGGCGAAATCCGTCGTCGATGAGAATAATAAAGCATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTGTGACGACGGATGAAAATTGCTGTGGTGGTAGCGGATCAAGCGGTGCGGTGGAAGGTGGTCAAGTTAATTCGTGTTTTGGTCCGGCGATTTTTGAGCCACCGCCACCACCACCTCCGCCACAACTGGCGAGTTCTTACCTATCGAATATCCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGGTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGCGTTAGTGATTTTAGCGAATTTTAG

mRNA sequence

CATGAAATTAGGAATGATTTTGAAGAAACCCTAAATCGAGAATGCCAATAAACCATGGAAAGAGGGATAATCAAACCAACAACAATGCCAATAAACCATTGTCTCCACCGCCGTTATTGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCTTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCCTCTTCCACTACCTCTCTTCTCAATGGCGTTATTCCCACCGCTGCCGCTAAGCCGCCTCAACGACATCCAGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGGCGAAATCCGTCGTCGATGAGAATAATAAAGCATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTGTGACGACGGATGAAAATTGCTGTGGTGGTAGCGGATCAAGCGGTGCGGTGGAAGGTGGTCAAGTTAATTCGTGTTTTGGTCCGGCGATTTTTGAGCCACCGCCACCACCACCTCCGCCACAACTGGCGAGTTCTTACCTATCGAATATCCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGGTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGCGTTAGTGATTTTAGCGAATTTTAG

Coding sequence (CDS)

ATGCCAATAAACCATGGAAAGAGGGATAATCAAACCAACAACAATGCCAATAAACCATTGTCTCCACCGCCGTTATTGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCTTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCCTCTTCCACTACCTCTCTTCTCAATGGCGTTATTCCCACCGCTGCCGCTAAGCCGCCTCAACGACATCCAGTGATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCCTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGGCGAAATCCGTCGTCGATGAGAATAATAAAGCATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTGTGACGACGGATGAAAATTGCTGTGGTGGTAGCGGATCAAGCGGTGCGGTGGAAGGTGGTCAAGTTAATTCGTGTTTTGGTCCGGCGATTTTTGAGCCACCGCCACCACCACCTCCGCCACAACTGGCGAGTTCTTACCTATCGAATATCCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGGTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGCGTTAGTGATTTTAGCGAATTTTAG

Protein sequence

MPINHGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNKASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF*

Homology

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BLAST of CSPI02G17560 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.9e-29
Identity = 106/293 (36.18%), Postives = 142/293 (48.46%), Query Frame = 0


Query: 4   NHGKRDNQTNNN----ANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLN 63
           +H KR+   NN+       P   PP LK+NKDSH+I+K        SPSS SS       
Sbjct: 20  HHPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKK------PPSPSSFSS------- 79

Query: 64  GVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDE----------- 123
                 AAKP  RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD++           
Sbjct: 80  ------AAKP--RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPG 139

Query: 124 ---ASTKATAKSVVDENNKASK-------------------------VVNDDNESSSVVT 183
              +  +  ++  VD  N  ++                         ++++D+ESSSV+T
Sbjct: 140 VVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVIT 199

Query: 184 TDENCCGGSGSSGAVEGGQVNSCFGPAIF--------EPPPPPPPPQL-------ASSYL 233
           T+EN           E GQVNS    +           PPPPPPPP +         +YL
Sbjct: 200 TEEN---------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYL 259

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BLAST of CSPI02G17560 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 21  SPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPTAAAKPPQRHPVIIYTH 80
           S P  LK+  +SH I+K+SS  +   P   +S                     PVIIY H
Sbjct: 12  SRPSSLKLAGESHTIKKTSSCKSKPRPHGRAS---------------------PVIIYAH 71

Query: 81  SPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNKASKVVNDDNESS 137
           SPK+IHT   DFMALVQ+LTG+       ++++++  V +E N     V DDN ++
Sbjct: 72  SPKVIHTRAEDFMALVQRLTGLDEIIRRNTSESSSSVVTEEVN-----VGDDNTAA 101

[Close]

BLAST of CSPI02G17560 vs. ExPASy TrEMBL
Match: A0A0A0LKA6 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 4.3e-119
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 5   HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT 64
           HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT
Sbjct: 10  HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT 69

Query: 65  AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK 124
           AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK
Sbjct: 70  AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK 129

Query: 125 ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPPPPQLASSY 184
           ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPPPPQLASSY
Sbjct: 130 ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPPPPQLASSY 189

Query: 185 LSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF 233
           LSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF
Sbjct: 190 LSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF 237

[Close]

BLAST of CSPI02G17560 vs. ExPASy TrEMBL
Match: A0A5A7V0G0 (VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001740 PE=4 SV=1)

HSP 1 Score: 389.4 bits (999), Expect = 1.0e-104
Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0


Query: 5   HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT 64
           HGKRDNQ NNNANKPLSPP  LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSL+NGV PT
Sbjct: 11  HGKRDNQINNNANKPLSPPS-LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGV-PT 70

Query: 65  AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK 124
           A AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS VDENNK
Sbjct: 71  AVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS-VDENNK 130

Query: 125 ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFE--PPPPPPPPQLAS 184
            SKVVNDDNESSSV+TTDENCC GSGSSGAVEGGQVNSCFGPA FE  PPPPPPPPQLA+
Sbjct: 131 VSKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPPPPPQLAN 190

Query: 185 SYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLF-GSNIPSLSSNGVSDFSEF 233
           SYL+N+PVYGPNSTEFLCGNQPIFNYDDSLLF GSNIPSLSSNG+SDFSEF
Sbjct: 191 SYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of CSPI02G17560 vs. ExPASy TrEMBL
Match: A0A1S3BCI6 (VQ motif-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103488533 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.4e-104
Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0


Query: 5   HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT 64
           HGKRDNQ NNNANKPLSPP  LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSL+NGV PT
Sbjct: 11  HGKRDNQINNNANKPLSPPS-LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGV-PT 70

Query: 65  AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK 124
           A AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS VDENNK
Sbjct: 71  AVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS-VDENNK 130

Query: 125 ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFE--PPPPPPPPQLAS 184
            SKVVNDDNESSSV+TTDENCC GSGSSGAVEGGQVNSCFGPA FE  PPPPPPPPQLA+
Sbjct: 131 ISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPPPPPQLAN 190

Query: 185 SYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLF-GSNIPSLSSNGVSDFSEF 233
           SYL+N+PVYGPNSTEFLCGNQPIFNYDDSLLF GSNIPSLSSNG+SDFSEF
Sbjct: 191 SYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of CSPI02G17560 vs. ExPASy TrEMBL
Match: A0A1S3BXM8 (VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.7e-83
Identity = 185/241 (76.76%), Postives = 197/241 (81.74%), Query Frame = 0


Query: 5   HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSN--TSSPSSSSSSTTSLLNGV- 64
           HGKRDNQ NNN NKP+  PP LKINKDSHLIRK+SSSSN  TSSPSSSSSSTTSL+NGV 
Sbjct: 8   HGKRDNQINNNGNKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSSSSTTSLVNGVA 67

Query: 65  -IPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDD-EASTK-ATAKSV 124
               AAAKP QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSDD EASTK AT K V
Sbjct: 68  AAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSDDHEASTKLATTKPV 127

Query: 125 VDENNKASK----VVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPP 184
           VDENN  +K    VV+DDNESSSVVTTDENCCGG G SG +E GQVNSCFGP IFEPPPP
Sbjct: 128 VDENNNNNKGSKAVVSDDNESSSVVTTDENCCGGGGGSGMMEVGQVNSCFGPVIFEPPPP 187

Query: 185 ---PPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSE 233
              PPPPQLA+SYL+NIP+Y PNS EFLC NQPIFNYDDSLLFG N        V+DF E
Sbjct: 188 PPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLFGGN------RVVNDFCE 242

[Close]

BLAST of CSPI02G17560 vs. ExPASy TrEMBL
Match: A0A0A0LPK7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023620 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.6e-73
Identity = 167/229 (72.93%), Postives = 176/229 (76.86%), Query Frame = 0


Query: 5   HGKRDNQ-TNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIP 64
           HGK DNQ TNN  NKP+  PP LKINKDSHLIRK+SSSSNTSSPSSSSSSTTSL NGV  
Sbjct: 11  HGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSSTTSLANGVAA 70

Query: 65  TAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENN 124
            AA  PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+         KA          
Sbjct: 71  AAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGI------CCCKAA--------- 130

Query: 125 KASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPPPPQLASS 184
               VVNDDNESSSVVTTDENCCGG G SG +E GQVNSCFGPAIFE  PPPPPPQLA+S
Sbjct: 131 ----VVNDDNESSSVVTTDENCCGG-GGSGLMEVGQVNSCFGPAIFE--PPPPPPQLANS 190

Query: 185 YLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF 233
           YL+NIP+Y PNSTEFLC NQPIFNYDDSLLFG N    S N   ++SEF
Sbjct: 191 YLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGGN---RSVNDFCEYSEF 214

[Close]

BLAST of CSPI02G17560 vs. NCBI nr
Match: KGN62345.1 (hypothetical protein Csa_018596 [Cucumis sativus])

HSP 1 Score: 437.2 bits (1123), Expect = 9.0e-119
Identity = 228/228 (100.00%), Postives = 228/228 (100.00%), Query Frame = 0


Query: 5   HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT 64
           HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT
Sbjct: 10  HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT 69

Query: 65  AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK 124
           AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK
Sbjct: 70  AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK 129

Query: 125 ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPPPPQLASSY 184
           ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPPPPQLASSY
Sbjct: 130 ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPPPPQLASSY 189

Query: 185 LSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF 233
           LSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF
Sbjct: 190 LSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSEF 237

[Close]

BLAST of CSPI02G17560 vs. NCBI nr
Match: KAA0061038.1 (VQ motif-containing protein 20-like [Cucumis melo var. makuwa])

HSP 1 Score: 389.4 bits (999), Expect = 2.1e-104
Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0


Query: 5   HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT 64
           HGKRDNQ NNNANKPLSPP  LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSL+NGV PT
Sbjct: 11  HGKRDNQINNNANKPLSPPS-LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGV-PT 70

Query: 65  AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK 124
           A AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS VDENNK
Sbjct: 71  AVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS-VDENNK 130

Query: 125 ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFE--PPPPPPPPQLAS 184
            SKVVNDDNESSSV+TTDENCC GSGSSGAVEGGQVNSCFGPA FE  PPPPPPPPQLA+
Sbjct: 131 VSKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPPPPPQLAN 190

Query: 185 SYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLF-GSNIPSLSSNGVSDFSEF 233
           SYL+N+PVYGPNSTEFLCGNQPIFNYDDSLLF GSNIPSLSSNG+SDFSEF
Sbjct: 191 SYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of CSPI02G17560 vs. NCBI nr
Match: XP_008445554.1 (PREDICTED: VQ motif-containing protein 20-like [Cucumis melo])

HSP 1 Score: 389.0 bits (998), Expect = 2.8e-104
Identity = 213/231 (92.21%), Postives = 219/231 (94.81%), Query Frame = 0


Query: 5   HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPT 64
           HGKRDNQ NNNANKPLSPP  LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSL+NGV PT
Sbjct: 11  HGKRDNQINNNANKPLSPPS-LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGV-PT 70

Query: 65  AAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNK 124
           A AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS VDENNK
Sbjct: 71  AVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS-VDENNK 130

Query: 125 ASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFE--PPPPPPPPQLAS 184
            SKVVNDDNESSSV+TTDENCC GSGSSGAVEGGQVNSCFGPA FE  PPPPPPPPQLA+
Sbjct: 131 ISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPPPPPPQLAN 190

Query: 185 SYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLF-GSNIPSLSSNGVSDFSEF 233
           SYL+N+PVYGPNSTEFLCGNQPIFNYDDSLLF GSNIPSLSSNG+SDFSEF
Sbjct: 191 SYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of CSPI02G17560 vs. NCBI nr
Match: XP_038876677.1 (VQ motif-containing protein 20 [Benincasa hispida])

HSP 1 Score: 345.1 bits (884), Expect = 4.6e-91
Identity = 198/238 (83.19%), Postives = 205/238 (86.13%), Query Frame = 0


Query: 5   HGKRDNQT------NNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLL 64
           HGKRDNQ       N N NKPL PPP LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSL+
Sbjct: 10  HGKRDNQNQSINNGNGNGNKPLCPPP-LKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLV 69

Query: 65  NGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSV 124
           NGV      KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT KS 
Sbjct: 70  NGV------KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATTKS- 129

Query: 125 VDENNKASK--VVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPPP 184
           VDENNK SK  VVNDDNESSSVVTTDENCCG  G SG VEGGQVNSCFG AIFEPPPPPP
Sbjct: 130 VDENNKGSKKAVVNDDNESSSVVTTDENCCG--GGSGVVEGGQVNSCFGAAIFEPPPPPP 189

Query: 185 PPQLASSYLSNIPVYGPNSTEFLCGNQP-IFNYDDSLLFGS-NIPSLSSNGVSDFSEF 233
           PPQLA+SYL+NIPVY PNSTEFLC NQP  FNYDDSLLFG+ NIPSLSSNG++DF E+
Sbjct: 190 PPQLANSYLTNIPVYRPNSTEFLCTNQPSFFNYDDSLLFGAHNIPSLSSNGINDFCEY 237

[Close]

BLAST of CSPI02G17560 vs. NCBI nr
Match: XP_008453685.1 (PREDICTED: VQ motif-containing protein 20 [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 3.6e-83
Identity = 185/241 (76.76%), Postives = 197/241 (81.74%), Query Frame = 0


Query: 5   HGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSN--TSSPSSSSSSTTSLLNGV- 64
           HGKRDNQ NNN NKP+  PP LKINKDSHLIRK+SSSSN  TSSPSSSSSSTTSL+NGV 
Sbjct: 8   HGKRDNQINNNGNKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSSSSTTSLVNGVA 67

Query: 65  -IPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDD-EASTK-ATAKSV 124
               AAAKP QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSDD EASTK AT K V
Sbjct: 68  AAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSDDHEASTKLATTKPV 127

Query: 125 VDENNKASK----VVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPP 184
           VDENN  +K    VV+DDNESSSVVTTDENCCGG G SG +E GQVNSCFGP IFEPPPP
Sbjct: 128 VDENNNNNKGSKAVVSDDNESSSVVTTDENCCGGGGGSGMMEVGQVNSCFGPVIFEPPPP 187

Query: 185 ---PPPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLFGSNIPSLSSNGVSDFSE 233
              PPPPQLA+SYL+NIP+Y PNS EFLC NQPIFNYDDSLLFG N        V+DF E
Sbjct: 188 PPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLFGGN------RVVNDFCE 242

[Close]

BLAST of CSPI02G17560 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-30
Identity = 106/293 (36.18%), Postives = 142/293 (48.46%), Query Frame = 0


Query: 4   NHGKRDNQTNNN----ANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLN 63
           +H KR+   NN+       P   PP LK+NKDSH+I+K        SPSS SS       
Sbjct: 20  HHPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKK------PPSPSSFSS------- 79

Query: 64  GVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDE----------- 123
                 AAKP  RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD++           
Sbjct: 80  ------AAKP--RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAMTDPG 139

Query: 124 ---ASTKATAKSVVDENNKASK-------------------------VVNDDNESSSVVT 183
              +  +  ++  VD  N  ++                         ++++D+ESSSV+T
Sbjct: 140 VVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESSSVIT 199

Query: 184 TDENCCGGSGSSGAVEGGQVNSCFGPAIF--------EPPPPPPPPQL-------ASSYL 233
           T+EN           E GQVNS    +           PPPPPPPP +         +YL
Sbjct: 200 TEEN---------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYGAYL 259

[Close]

BLAST of CSPI02G17560 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 9.9e-07
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 21  SPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLLNGVIPTAAAKPPQRHPVIIYTH 80
           S P  LK+  +SH I+K+SS  +   P   +S                     PVIIY H
Sbjct: 12  SRPSSLKLAGESHTIKKTSSCKSKPRPHGRAS---------------------PVIIYAH 71

Query: 81  SPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKSVVDENNKASKVVNDDNESS 137
           SPK+IHT   DFMALVQ+LTG+       ++++++  V +E N     V DDN ++
Sbjct: 72  SPKVIHTRAEDFMALVQRLTGLDEIIRRNTSESSSSVVTEEVN-----VGDDNTAA 101

[Close]

BLAST of CSPI02G17560 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 46.2 bits (108), Expect = 4.1e-05
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 0


Query: 20  LSPPPL-LKINKDSH-LIRKSSSSSNTSSPSSSSSSTTSLLNGVIPTAAAKPPQRHPVII 79
           L P P+ LK+  DSH +I+K   +     P    +          P+ +  PP   PVII
Sbjct: 12  LGPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE------PSQSRPPP--GPVII 71

Query: 80  YTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAKS 118
           YT SP+IIHTHP +FM LVQ+LTG + +   +S+ +++ S
Sbjct: 72  YTVSPRIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTS 103

The following BLAST results are available for this feature:

BLAST of CSPI02G17560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	8.9e-29	36.18	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	1.4e-05	35.34	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CSPI02G17560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKA6	4.3e-119	100.00	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=...	[more]
A0A5A7V0G0	1.0e-104	92.21	VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BCI6	1.4e-104	92.21	VQ motif-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103488533 PE=4...	[more]
A0A1S3BXM8	1.7e-83	76.76	VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1	[more]
A0A0A0LPK7	1.6e-73	72.93	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023620 PE=4 SV=...	[more]

BLAST of CSPI02G17560 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62345.1	9.0e-119	100.00	hypothetical protein Csa_018596 [Cucumis sativus]	[more]
KAA0061038.1	2.1e-104	92.21	VQ motif-containing protein 20-like [Cucumis melo var. makuwa]	[more]
XP_008445554.1	2.8e-104	92.21	PREDICTED: VQ motif-containing protein 20-like [Cucumis melo]	[more]
XP_038876677.1	4.6e-91	83.19	VQ motif-containing protein 20 [Benincasa hispida]	[more]
XP_008453685.1	3.6e-83	76.76	PREDICTED: VQ motif-containing protein 20 [Cucumis melo]	[more]

BLAST of CSPI02G17560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	6.4e-30	36.18	VQ motif-containing protein	[more]
AT1G68450.1	9.9e-07	35.34	VQ motif-containing protein	[more]
AT1G21326.1	4.1e-05	38.00	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 79..103 e-value: 1.6E-11 score: 43.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..144
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 9..232
IPR039832	VQ motif-containing protein 20	PANTHER	PTHR33143:SF4	VQ MOTIF-CONTAINING PROTEIN 20	coord: 9..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G17560.1	CSPI02G17560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding