CSPI02G17290 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G17290
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 16406611 .. 16406961 (+)
RNA-Seq ExpressionCSPI02G17290
SyntenyCSPI02G17290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTGATATCTGAAGATGAGCGCTGTCGCTGTTTGTTAATGAAAGTGAAGCCAAAGGTGGCGGATCTGGAGGAGATGGAACAACCAACTACTCCAACCAGTGAAGAGTTCAGAATTGGGCGAGTGCATAATTATTTGGCATGCCCTCCACCGCCGAGGAAGCCTAAATCACTCCCCGGCCCCATCACCATGAGTTTTACTACTGTCCACAATAATAATAATAATAATGGCGCCAAATACTTCACTTCTTACTCGGAACTCCAGGCCTTCTTCTTCGCCTCCACTTCACCGTTTCCCTCTACCCAACAAAATCATTCTTCCTTTTACCGCTCTGCCACCCAACACTAA

mRNA sequence

ATGATGGTGATATCTGAAGATGAGCGCTGTCGCTGTTTGTTAATGAAAGTGAAGCCAAAGGTGGCGGATCTGGAGGAGATGGAACAACCAACTACTCCAACCAGTGAAGAGTTCAGAATTGGGCGAGTGCATAATTATTTGGCATGCCCTCCACCGCCGAGGAAGCCTAAATCACTCCCCGGCCCCATCACCATGAGTTTTACTACTGTCCACAATAATAATAATAATAATGGCGCCAAATACTTCACTTCTTACTCGGAACTCCAGGCCTTCTTCTTCGCCTCCACTTCACCGTTTCCCTCTACCCAACAAAATCATTCTTCCTTTTACCGCTCTGCCACCCAACACTAA

Coding sequence (CDS)

ATGATGGTGATATCTGAAGATGAGCGCTGTCGCTGTTTGTTAATGAAAGTGAAGCCAAAGGTGGCGGATCTGGAGGAGATGGAACAACCAACTACTCCAACCAGTGAAGAGTTCAGAATTGGGCGAGTGCATAATTATTTGGCATGCCCTCCACCGCCGAGGAAGCCTAAATCACTCCCCGGCCCCATCACCATGAGTTTTACTACTGTCCACAATAATAATAATAATAATGGCGCCAAATACTTCACTTCTTACTCGGAACTCCAGGCCTTCTTCTTCGCCTCCACTTCACCGTTTCCCTCTACCCAACAAAATCATTCTTCCTTTTACCGCTCTGCCACCCAACACTAA

Protein sequence

MMVISEDERCRCLLMKVKPKVADLEEMEQPTTPTSEEFRIGRVHNYLACPPPPRKPKSLPGPITMSFTTVHNNNNNNGAKYFTSYSELQAFFFASTSPFPSTQQNHSSFYRSATQH*
Homology
[Close]
BLAST of CSPI02G17290 vs. ExPASy TrEMBL
Match: A0A0A0LNC7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349030 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.3e-57
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 2   MVISEDERCRCLLMKVKPKVADLEEMEQPTTPTSEEFRIGRVHNYLACPPPPRKPKSLPG 61
           MVISEDERCRCLLMKVKPKVADLEEMEQPTTPTSEEFRIGRVHNYLACPPPPRKPKSLPG
Sbjct: 1   MVISEDERCRCLLMKVKPKVADLEEMEQPTTPTSEEFRIGRVHNYLACPPPPRKPKSLPG 60

Query: 62  PITMSFTTVHNNNNNNGAKYFTSYSELQAFFFASTSPFPSTQQNHSSFYRSATQH 117
           PITMSFTTVH NNNNNGAKYFTSYSELQAFFFASTSPFPSTQQNHSSFYRSATQH
Sbjct: 61  PITMSFTTVH-NNNNNGAKYFTSYSELQAFFFASTSPFPSTQQNHSSFYRSATQH 114

[Close]
BLAST of CSPI02G17290 vs. ExPASy TrEMBL
Match: A0A5A7V162 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002020 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.9e-33
Identity = 84/106 (79.25%), Postives = 89/106 (83.96%), Query Frame = 0 

Query: 1   MMVISEDERCRCLLMKVKPKVADLEEM---EQPTTPTSEEFRIG-RVHNYLACPPPPRKP 60
           MMVISEDE  RCL +K+KPKVAD  EM   EQPTTPTSEEFRIG RVHNYL CPPPPRKP
Sbjct: 1   MMVISEDE--RCLFLKMKPKVADRTEMDLEEQPTTPTSEEFRIGRRVHNYLTCPPPPRKP 60

Query: 61  KSLPGPITMSFTTVHNNNNNNGAKYFTSYSELQAFFFASTSPFPST 103
           KSLPGPITMS TT+  +NNNN AKYFT+YSEL A FFASTS FPST
Sbjct: 61  KSLPGPITMSRTTL-LHNNNNVAKYFTTYSELHAAFFASTSSFPST 103

[Close]
BLAST of CSPI02G17290 vs. NCBI nr
Match: KGN62317.1 (hypothetical protein Csa_018773 [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 1.1e-56
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0 

Query: 2   MVISEDERCRCLLMKVKPKVADLEEMEQPTTPTSEEFRIGRVHNYLACPPPPRKPKSLPG 61
           MVISEDERCRCLLMKVKPKVADLEEMEQPTTPTSEEFRIGRVHNYLACPPPPRKPKSLPG
Sbjct: 1   MVISEDERCRCLLMKVKPKVADLEEMEQPTTPTSEEFRIGRVHNYLACPPPPRKPKSLPG 60

Query: 62  PITMSFTTVHNNNNNNGAKYFTSYSELQAFFFASTSPFPSTQQNHSSFYRSATQH 117
           PITMSFTTVH NNNNNGAKYFTSYSELQAFFFASTSPFPSTQQNHSSFYRSATQH
Sbjct: 61  PITMSFTTVH-NNNNNGAKYFTSYSELQAFFFASTSPFPSTQQNHSSFYRSATQH 114

[Close]
BLAST of CSPI02G17290 vs. NCBI nr
Match: KAA0061064.1 (hypothetical protein E6C27_scaffold501G002020 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 84/106 (79.25%), Postives = 89/106 (83.96%), Query Frame = 0 

Query: 1   MMVISEDERCRCLLMKVKPKVADLEEM---EQPTTPTSEEFRIG-RVHNYLACPPPPRKP 60
           MMVISEDE  RCL +K+KPKVAD  EM   EQPTTPTSEEFRIG RVHNYL CPPPPRKP
Sbjct: 1   MMVISEDE--RCLFLKMKPKVADRTEMDLEEQPTTPTSEEFRIGRRVHNYLTCPPPPRKP 60

Query: 61  KSLPGPITMSFTTVHNNNNNNGAKYFTSYSELQAFFFASTSPFPST 103
           KSLPGPITMS TT+  +NNNN AKYFT+YSEL A FFASTS FPST
Sbjct: 61  KSLPGPITMSRTTL-LHNNNNVAKYFTTYSELHAAFFASTSSFPST 103

The following BLAST results are available for this feature:
BLAST of CSPI02G17290 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G17290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNC75.3e-5799.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G349030 PE=4 SV=1[more]
A0A5A7V1626.9e-3379.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CSPI02G17290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62317.11.1e-5699.13hypothetical protein Csa_018773 [Cucumis sativus][more]
KAA0061064.11.4e-3279.25hypothetical protein E6C27_scaffold501G002020 [Cucumis melo var. makuwa][more]
BLAST of CSPI02G17290 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G17290.1CSPI02G17290.1mRNA