CSPI02G15560 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G15560
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribosome assembly factor mrt4
Location	Chr2: 15149888 .. 15154294 (+)
RNA-Seq Expression	CSPI02G15560
Synteny	CSPI02G15560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACACTACTTTTTCTCCGTTTGTTCCATAGCTTGCCGCCAACTCTTCAACCATATTTGATTTCTTTCTTCTTTCTTCTCCCTCTCCATCGCCTCCATTATCGGTCCCCGGTTCACCTCTATACTCAATTTTCTTTCTCCTCCTCTTATCTTCCTCTCTACTGTTGCAAAACTCCATCTCAACGTCTGTATCAACTGTCAAGGTTTTTTTTAGCAGCAATACAAGATGCCCAAGTCGAAGCGTGATAGACCAGGTACGTTTTAATTCCTCTTGGACTTTTCTGTGCATCGTTTCCTGCTGCAAGAAGTTGAATCTGTCTAGTTATTTTGTGTTTGTTGTATCTTACTTGTTTTCGACACTTAGAGAAGTAGATTTTAGCTCATCTGGTTAAAGGAGAGATTGGTTTGATATGTTAGGGGAAGTTGTAGTTGAAAGATGGGTTCTTTTTGTGTGTGTGTGTTTGCTATATCATGAGGGGAAGTTCATTCTGAAGTGCTTAGTTCACTAGGTTGGCTGCAAATGCACCGGCATTTGTGGTGTTACATTATGTAATAGGACCTGAATGTGAAAATATATGAATATCCTTAGTATGCACACAACTAAGTATATCTTTTTGATTGCTATTTTCATGAGACACCTCTGATGAAATTTGTTTCTTATTAAAAATAGGTAACTTTTTTTCCTTCATTTTACTCTGTGGCAATGGTAAGTAATGGGGGTTTCTAGTTTCTAAGTTTCTGACAAATTTTTTAACACCAAAGAAGATATTTGGTATTTCTTAGACTAGGTATTGTTTAGGCTTGGGATGGTCTTGATATCTTATCATCACTTGTGGAGAAATTTTCCACTAGTTGCTTCGTTCTCACAAGGTTACCATAGTTGGTATTTTTTCTTGTTTATAGGAACTTTCCTTGTAATTCAGATTTACAAACTAGTTTTTCTCTTTCTTGCTTAAGCGTTGTATTGTTCATCTAAGGCTTTTCAAAGTTCTATTGACTATATTTGATGTGTTTCTTGTGTAAATACTTTAAGAGTGAGGAGTTTGTAGAGGCATCCTGAGAAGGAGTAGCAGTAGGTCATTTGCTAACCTCTTCTTGAACTAATACTTATTACAAATATGATGTTTTGTGAGCAACTAGCGTCAAGCTTGCTTCCCTTGACGGTACGAGAGGCTTTAGTAGTGTGCACTAGAAGATAGTTTTTGTTGTCGAATATGAGGGAAAAATAATTTTACTTTTTAGTATAGGTGTTGCCAGGGGGTGGGTGAGTTGAAAGTTTCTGTCTATGTGCTAAATATAGAGTTGCTTACAACATACGGAACGTGCCTTAAGCTACAGTGTTTGTTACCGGTGATTAATTTCTAAAAAAATATACTTAGTAGGCTGCTTAATGTTGTTAAACAGAAACCAAATAGCAGTAAACCTAGGAGAACTTAATGACTTGCTTTAACTGTAGGAAGATGCTAAAATTTTGTTCTTTTAATTCAAGGTTCTTATTGAATATGGGTTAAAGGATTTGTTATATTATGGGTTAATTTGTATGAGGCAGTTTCTTGTGAAAAGTACGAGGCAGTTGAAGAAGTTAAATGACTTGCGTTGGTAGTAATCAGTGTCAAACTCATGTGGTTTTTAACTTAAAAAGAAAGACGAAAAATATGAACTTAGTCCGATGCAGAATAGTGTTTTGAGTCTTCTATCTAATTGTTCGTGGGATAAATGCAGTTACTTTATCAAAAACAAAGAAGAAAGGAAGGGACCACAAGAAATCAATGGTGGAATTGATCAGGCAGGCTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGGCAAGTTCTACTTCCTGACTTCTCTATTATTAATTTGCTTCATCATTTCAAATATTGATTAGATACAAATGTACTTCCTCTATGTTGTTTGGTTAGCTTCTAGATAGCACGAGAAAAGATATGAATAATAAATAGCACATTTTAAAACTCAAAAGATAAAATCATAATGAATAGCATTCCTTAGGAGAAATGATGAGAACGTGTTGTTTCCATAACCACTGAAAATAACAATTTTAGCACGTTATGGTAACAGCAAGTGTTTCCATGCTTACATAGCAACCTCTCTCCTTGCTTTAAAAAGCTTCACATAAAAAGGGGGTTACAACCTTTGGCTGCTGGGTTGTGTACCTGTGTCTTAACATGTCCTCTATTCTTTTTCTTCTTGAAGGCATCAATGATTTGGAAATTATATTACTCGACTTTGAAACATATTTTAGCTATACATTATTGTCTCATGCTTCTGGTGCTCGTTCACATTTTTAAAGTGTATAAATGTTTAATGAGGCTAAACGGTTGAAAATGAGGATATTCTTTTTGTGAACTCATTTATTGCAATTTTTGAACTTCTGCTGATGGCATTTTCAGATGTCATGCATGGTCTCTCTTATTTTTTTCTAATGAATTGATGTAACCTGACCTGACCAGACCGAGTAGTTTTAATTGGGTTTCCAAATTGAATTTTTTTCCCCCAATGATAGATTGTTTTTTGGAGCAAACAAAGTTATGCAAATTTCTCTTGGGCGAAGTGATTCTGATGAGATTCGACCAGGCCTTCACAATGTTTCTAAGGTGAATCTTCTTTTCCAAATTGCATATACTTTAAGTGTTCTTTTTCTGTAGTCTTTAGGAAGTAACATTCACTCTTCTATTTTCAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACCTACCAAAAGAAGAGGTTGAGAGGTAAGTGAGCATGCAGTGTTTTAAACTTGACAAGCTCTGGCAAAAAGTAGTAATTTTGACAAGTTGCTATTTCATTTTTAATTTAAATACCATGGTATTTAAATTTAATGAATTGTGCATTCTTTTTTTTGTTTAGCGGTTGAAGGATCAGATAAATTGTGCTCAATAAATTTCCATATCTATGAATACAAAAGTTCGAAATTTTCATTTGAGAAAGACAGCTTAAAAATGAGATTTTTGGCCAAAAAAAAAAATCCCAACTTTGTCTCACATGGTTAGCATTTCAATTCTGTGGGAAGGGACTTCTAGAATAAATTGCTTAAAAGAAAATGCTCGTATATTTGTTATGTTTTACAATAATGCTTGATTTAATTTTTAATGTTTTGTTATACAGGTTATTTAATGAGTATGAGGATTATGATTATGCAAGGACTGGAAGTGCAGCCTCAGAAAAGGTTTTGTGCCCCTTTGAACACGACATTTATCGAGTTTTCTTTTTAATAAATCTGATTGCACTTTTTTTGAATGTGGTGATTCAACAAAAAGGTCCGGTATGGTTTTATATAATCTGTGTTATAATTTGCATGTACTTGGTGGTTGGATGCTTTATTGAAGTTTAATGCTATTAGGTTGAGCTTAAGGAAGGTCCACTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGCTTGGATTACCTGTTCGTTTGAATAAGGGTGAGTAAATACACACTTTGTGCTTGCAAGCATTACTTACTTTTTAAAAGTTGGTTACAAAGCAGAAATCTTTGTGGAACAGGTGTGGTGGAGCTTGTATCAGACTTTGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGGTTTGTATCTTTTGTCGGCATTGAACAAATTGTCAGGTTCCTTTGGTTTTTGTTCTCTAAGTTTGATTTTTCTTTCATGTAGCAATTTGAAGTTTCATAGAGTGAACTTTTATCTTTTTCTTCTTTACCGTTTACAACCTTACTTGAGTTGTACATTTGTTTGAGTTATATGAACTGACAGTTGGAATTTGAGGCTAAGAGAGAGACATATACTTTGGCATTGACGATTAAGATGTTTGATTTGATTTGGTTGCAGCGTGCACTGGGGCTAAGGACGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGTCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAAATCTCCAACACATAGGAATCCAAATTATGATAATATATATATGAATGCAATGCCAATGCAATGAATGGGTGCCCCTAGGATTCATTGCCATGATATATATATATATGTGTGTGTGATTGGGATTCCTTCCTTTTTTTTTTTTTCTTTTTTCTTTTTTGATTTTGGTTTGTTTTTACAAGTTGTGTTGTTGAGTGCACCCGGTCATTTATTCACTTAGTGTGTTCTTTAGTTCAACAACTCACAAAGAAATCCTCAATTTTGTTGTGTTAAGTGAGATGGACAATTGGGTATTATGATTTGGTAGATTTCTTCAATAGTATTATTAATCCTCAC

mRNA sequence

GAAACACTACTTTTTCTCCGTTTGTTCCATAGCTTGCCGCCAACTCTTCAACCATATTTGATTTCTTTCTTCTTTCTTCTCCCTCTCCATCGCCTCCATTATCGGTCCCCGGTTCACCTCTATACTCAATTTTCTTTCTCCTCCTCTTATCTTCCTCTCTACTGTTGCAAAACTCCATCTCAACGTCTGTATCAACTGTCAAGGTTTTTTTTAGCAGCAATACAAGATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACAAAGAAGAAAGGAAGGGACCACAAGAAATCAATGGTGGAATTGATCAGGCAGGCTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGATTGTTTTTTGGAGCAAACAAAGTTATGCAAATTTCTCTTGGGCGAAGTGATTCTGATGAGATTCGACCAGGCCTTCACAATGTTTCTAAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACCTACCAAAAGAAGAGGTTGAGAGGTTATTTAATGAGTATGAGGATTATGATTATGCAAGGACTGGAAGTGCAGCCTCAGAAAAGGTTGAGCTTAAGGAAGGTCCACTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGCTTGGATTACCTGTTCGTTTGAATAAGGGTGTGGTGGAGCTTGTATCAGACTTTGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGCGTGCACTGGGGCTAAGGACGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGTCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAAATCTCCAACACATAGGAATCCAAATTATGATAATATATATATGAATGCAATGCCAATGCAATGAATGGGTGCCCCTAGGATTCATTGCCATGATATATATATATATGTGTGTGTGATTGGGATTCCTTCCTTTTTTTTTTTTTCTTTTTTCTTTTTTGATTTTGGTTTGTTTTTACAAGTTGTGTTGTTGAGTGCACCCGGTCATTTATTCACTTAGTGTGTTCTTTAGTTCAACAACTCACAAAGAAATCCTCAATTTTGTTGTGTTAAGTGAGATGGACAATTGGGTATTATGATTTGGTAGATTTCTTCAATAGTATTATTAATCCTCAC

Coding sequence (CDS)

ATGCCCAAGTCGAAGCGTGATAGACCAGTTACTTTATCAAAAACAAAGAAGAAAGGAAGGGACCACAAGAAATCAATGGTGGAATTGATCAGGCAGGCTGTGGAAAATTACAACTCAGTTTTTGTTTTCACTGTTGAGAACATGAGAAACCTCAAGTTCAAGGAACTCAGGGAGCAGCTGAAGTCAACTAGCAGATTGTTTTTTGGAGCAAACAAAGTTATGCAAATTTCTCTTGGGCGAAGTGATTCTGATGAGATTCGACCAGGCCTTCACAATGTTTCTAAGCTTTTGCATGGAAATACTGGACTTTGCTTCACAAACCTACCAAAAGAAGAGGTTGAGAGGTTATTTAATGAGTATGAGGATTATGATTATGCAAGGACTGGAAGTGCAGCCTCAGAAAAGGTTGAGCTTAAGGAAGGTCCACTGGAGCAGTTTAGCCATGAGATGGAGCCTTCTCTACGGAAGCTTGGATTACCTGTTCGTTTGAATAAGGGTGTGGTGGAGCTTGTATCAGACTTTGTTGTATGCGAGGAGGGCAAGTCTCTATCACCAGAGTCAGCCGGAATACTGCGTGCACTGGGGCTAAGGACGGCAATTTTTCGGCTGAATTTGGTTTGCAGATGGAGTCCCGGTGACTTTGAACTTTACATTGATGGACCAGAAAATTCTGATGTGGAATCTGCCTAA

Protein sequence

MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA*

Homology

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BLAST of CSPI02G15560 vs. ExPASy Swiss-Prot
Match: A4FV84 (mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 8.5e-56
Identity = 115/230 (50.00%), Postives = 152/230 (66.09%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG + K++++E +R+ V+ Y  +F+F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K  SR+FFG NKVM ++LGRS SDE +  LH VSK L G  GL FTN  KEEV+  F +Y
Sbjct: 61  KH-SRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVDEWFTKY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            + DYAR G+ A+  V L  GPLEQF H MEP LR+LGLP  L KGVV L+SD+ VC+EG
Sbjct: 121 TEMDYARAGNKATFTVNLDPGPLEQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRW--SPGDFELYIDGPENSDVES 229
             L+PE A +L+  G   A F++++   W    G F+   D    S  ES
Sbjct: 181 DVLTPEQARVLKLFGYEMAEFKVSIKYMWDAQSGRFQQMGDDLPESAPES 229

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BLAST of CSPI02G15560 vs. ExPASy Swiss-Prot
Match: Q9UKD2 (mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2)

HSP 1 Score: 216.1 bits (549), Expect = 4.2e-55
Identity = 114/230 (49.57%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG + K++++E +R+ V+ Y  +F+F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K  SR+FFG NKVM ++LGRS SDE +  LH VSK L G  GL FTN  KEEV   F +Y
Sbjct: 61  KH-SRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKRLRGEVGLLFTNRTKEEVNEWFTKY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            + DYAR G+ A+  V L  GPLEQF H MEP LR+LGLP  L +GVV L+SD+ VC+EG
Sbjct: 121 TEMDYARAGNKAAFTVSLDPGPLEQFPHSMEPQLRQLGLPTALKRGVVTLLSDYEVCKEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRW--SPGDFELYIDGPENSDVES 229
             L+PE A +L+  G   A F++ +   W    G F+   D    S  ES
Sbjct: 181 DVLTPEQARVLKLFGYEMAEFKVTIKYMWDSQSGRFQQMGDDLPESASES 229

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BLAST of CSPI02G15560 vs. ExPASy Swiss-Prot
Match: Q9D0I8 (mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.1e-54
Identity = 114/230 (49.57%), Postives = 150/230 (65.22%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRD+ V+L+KT KKG + K++++E +R+ V+ Y  +F+F+V NMRN K K++R   
Sbjct: 1   MPKSKRDKKVSLTKTAKKGLELKQNLIEELRKCVDTYKYLFIFSVANMRNSKLKDIRNAW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K  SR+FFG NKVM ++LGRS SDE +  LH VSK L G  GL FTN  KEEV   F +Y
Sbjct: 61  KH-SRMFFGKNKVMMVALGRSPSDEYKDNLHQVSKKLRGEVGLLFTNRTKEEVNEWFTKY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            + D+AR G+ A+  V L  GPL+QF H MEP LR+LGLP  L KGVV L+SD+ VC+EG
Sbjct: 121 TEMDFARAGNKATLTVSLDPGPLKQFPHSMEPQLRQLGLPTALKKGVVTLLSDYEVCKEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRW--SPGDFELYIDGPENSDVES 229
             L+PE A IL+  G   A F++ +   W    G F+   D    S  ES
Sbjct: 181 DVLTPEQARILKLFGYEMAEFKVIIKYMWDAQSGRFQQMDDDLPESAPES 229

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BLAST of CSPI02G15560 vs. ExPASy Swiss-Prot
Match: Q86HD3 (Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.9e-40
Identity = 82/216 (37.96%), Postives = 131/216 (60.65%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           M KSKR+  V ++K  K   + KK +V  I+  V+ Y  +++FT ENMRN K K +R + 
Sbjct: 1   MVKSKRNVVVNMTKVTKNPGEKKKKLVSTIKDIVDQYKFIYLFTFENMRNNKLKSVRTEW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
            STS+  FG NKV+ + LG+S+ DE++P LH +++ L G  GL FTN PK++V   F  Y
Sbjct: 61  -STSKFLFGKNKVLSVGLGKSEEDELKPNLHKLTEHLEGECGLFFTNEPKDKVFEYFTNY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            + D+ R+G  + E + +KEGP+   +H ME  LR LGLP  L  GV+ +  ++ +CE G
Sbjct: 121 SEKDFPRSGFVSEETITIKEGPIVGMTHSMETYLRGLGLPTTLKNGVIFVDREYTLCEAG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFEL 217
            +++PE + +L+      + F+ ++   W+  +F L
Sbjct: 181 VAVTPEQSQLLKLFNHEISEFKFHIKGFWNEDEFTL 215

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BLAST of CSPI02G15560 vs. ExPASy Swiss-Prot
Match: Q9USZ6 (Ribosome assembly factor mrt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrt4 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.8e-32
Identity = 76/222 (34.23%), Postives = 127/222 (57.21%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKS+R + +TL++T+KKG + K ++   ++Q++++++ +++F V NMRN   K +R+  
Sbjct: 1   MPKSRRSKVLTLAQTEKKGHEGKAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDW 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           K  SR+F G  KVM  +LG +  +E    +  ++KLLHG  GL FTN   +EV   F  +
Sbjct: 61  KG-SRIFMGKTKVMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIGYFESF 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQ------------FSHEMEPSLRKLGLPVRLNKGVV 180
              D+AR G+ A     +  GP+               +H +EP +R+LG+P  L  GVV
Sbjct: 121 VQNDFARAGAVAPFTHVIPAGPVYSRAGQIPVEDDILLTHTLEPQVRQLGMPTVLKNGVV 180

Query: 181 ELVSDFVVCEEGKSLSPESAGILRALGLRTAIFRLNLVCRWS 211
            L++DF +C EG+ L      +L+  G+  A F++ L+  +S
Sbjct: 181 TLLADFPLCTEGQQLDSRQTRLLKLFGITAAEFKVGLLGYYS 221

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BLAST of CSPI02G15560 vs. ExPASy TrEMBL
Match: A0A6J1DT71 (Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=3 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.7e-115
Identity = 209/229 (91.27%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSRLFFGANKVMQ+SLGR+ SDEIRPGLH +SKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           EDYDYARTGS A+EKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EDYDYARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           K+LSPESAGILRALG+R A FRLNLVCRWSPGDF+LYI+G +NSDVESA
Sbjct: 181 KALSPESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of CSPI02G15560 vs. ExPASy TrEMBL
Match: A0A6J1F4Z2 (Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.9e-114
Identity = 207/229 (90.39%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SRLFFGANKVMQ+SLGR+ SDEI+PGL+ VSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            DYDYARTGS A+EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of CSPI02G15560 vs. ExPASy TrEMBL
Match: A0A6J1I1E2 (Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.6e-113
Identity = 206/229 (89.96%), Postives = 221/229 (96.51%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SRLFFGANKVMQ+SLGR+ SDEI+PGL+ VSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            DYDYARTGS A+EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+ SD+E+A
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDYSDIETA 229

[Close]

BLAST of CSPI02G15560 vs. ExPASy TrEMBL
Match: A0A0A0LM77 (Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.6e-104
Identity = 198/207 (95.65%), Postives = 199/207 (96.14%), Query Frame = 0


Query: 26  MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSR---LFFGANKVMQISLGRSD 85
           MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSR   L   +NKVMQISLGRSD
Sbjct: 1   MVELIRQAVENYNSVFVFTVENMRNLKFKELREQLKSTSRQVLLPDFSNKVMQISLGRSD 60

Query: 86  SDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP 145
           SDEIRPGLH VSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP
Sbjct: 61  SDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGP 120

Query: 146 LEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR 205
           L QFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR
Sbjct: 121 LGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLRTAIFR 180

Query: 206 LNLVCRWSPGDFELYIDGPENSDVESA 230
           LNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 181 LNLVCRWSPGDFELYIDGPENSDVESA 207

[Close]

BLAST of CSPI02G15560 vs. ExPASy TrEMBL
Match: A0A2P6PDT8 (Ribosome assembly factor mrt4 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0224251 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 8.4e-99
Identity = 178/229 (77.73%), Postives = 208/229 (90.83%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTK+KGR+HK+++V  I+QA E+YNSV+VF+ ENMRNLKFKE R+QL
Sbjct: 1   MPKSKRDRPVTLSKTKRKGREHKEAVVNTIKQAAEDYNSVYVFSFENMRNLKFKEFRDQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSR F G+NKVMQI+LGRS+SDEI+ GLH VS++LHGN GLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRFFLGSNKVMQIALGRSESDEIKNGLHKVSEVLHGNAGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           E+YD+ARTGS A+EKVEL+EGPLEQFSHEMEP LRK G+PVRLNKGVVELV+D+VVCEEG
Sbjct: 121 EEYDFARTGSIATEKVELQEGPLEQFSHEMEPFLRKQGMPVRLNKGVVELVADYVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           K LSPESA ILR LG +TA FRL+L+CRWSPG+FELY+ GP +S VES+
Sbjct: 181 KPLSPESARILRLLGSKTATFRLHLICRWSPGEFELYVPGPGDSGVESS 229

[Close]

BLAST of CSPI02G15560 vs. NCBI nr
Match: XP_011649395.1 (mRNA turnover protein 4 homolog [Cucumis sativus] >KAE8651976.1 hypothetical protein Csa_005993 [Cucumis sativus])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 227/229 (99.13%), Postives = 227/229 (99.13%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSRLFFGANKVMQISLGRSDSDEIRPGLH VSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           EDYDYARTGSAASEKVELKEGPL QFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EDYDYARTGSAASEKVELKEGPLGQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA
Sbjct: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 229

[Close]

BLAST of CSPI02G15560 vs. NCBI nr
Match: XP_038902849.1 (mRNA turnover protein 4 homolog [Benincasa hispida])

HSP 1 Score: 431.8 bits (1109), Expect = 3.7e-117
Identity = 215/229 (93.89%), Postives = 224/229 (97.82%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMVELIRQAVENYNS+FVFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVELIRQAVENYNSIFVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SRLFFGANKVMQ+SLGRS S+EIRPGLH VSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRSASNEIRPGLHKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            DYDYARTGSAA+EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG
Sbjct: 121 VDYDYARTGSAATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALG+R A FRL+LVCRWSPGDFELYIDGP+NSDVESA
Sbjct: 181 KSLSPESAGILRALGIRMATFRLHLVCRWSPGDFELYIDGPDNSDVESA 229

[Close]

BLAST of CSPI02G15560 vs. NCBI nr
Match: XP_022157470.1 (mRNA turnover protein 4 homolog [Momordica charantia])

HSP 1 Score: 425.2 bits (1092), Expect = 3.5e-115
Identity = 209/229 (91.27%), Postives = 223/229 (97.38%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KSTSRLFFGANKVMQ+SLGR+ SDEIRPGLH +SKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSTSRLFFGANKVMQVSLGRTVSDEIRPGLHKISKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           EDYDYARTGS A+EKVELKEGPLEQFSHEMEPSLRKLG+PVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EDYDYARTGSTATEKVELKEGPLEQFSHEMEPSLRKLGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           K+LSPESAGILRALG+R A FRLNLVCRWSPGDF+LYI+G +NSDVESA
Sbjct: 181 KALSPESAGILRALGIRMASFRLNLVCRWSPGDFQLYIEGLDNSDVESA 229

[Close]

BLAST of CSPI02G15560 vs. NCBI nr
Match: XP_022933518.1 (mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover protein 4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 421.8 bits (1083), Expect = 3.8e-114
Identity = 207/229 (90.39%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SRLFFGANKVMQ+SLGR+ SDEI+PGL+ VSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASDEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            DYDYARTGS A+EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of CSPI02G15560 vs. NCBI nr
Match: XP_023529350.1 (mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 420.2 bits (1079), Expect = 1.1e-113
Identity = 206/229 (89.96%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HKKSMV+LIRQAVENYNS++VFTVENMRNLKFKELREQL
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKKSMVDLIRQAVENYNSIYVFTVENMRNLKFKELREQL 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           KS+SRLFFGANKVMQ+SLGR+ S+EI+PGL+ VSKLLHGNTGLCFTNLPKEEVERLFNEY
Sbjct: 61  KSSSRLFFGANKVMQVSLGRTASEEIQPGLYKVSKLLHGNTGLCFTNLPKEEVERLFNEY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
            DYDYARTGS A+EKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDF VCEEG
Sbjct: 121 VDYDYARTGSEATEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFTVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELYIDGPENSDVESA 230
           KSLSPESAGILRALG+R A FRLNLVCRWSPG+FELYIDGP+NSD+E+A
Sbjct: 181 KSLSPESAGILRALGIRMATFRLNLVCRWSPGEFELYIDGPDNSDIETA 229

[Close]

BLAST of CSPI02G15560 vs. TAIR 10
Match: AT1G25260.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 312.0 bits (798), Expect = 4.0e-85
Identity = 152/217 (70.05%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MPKSKRDRPVTLSKTKKKGRDHKKSMVELIRQAVENYNSVFVFTVENMRNLKFKELREQL 60
           MPKSKRDRPVTLSKTKKKGR+HK+ +V  IR+AVE Y+SV+VF+ ENMRN+KFKE R+Q 
Sbjct: 1   MPKSKRDRPVTLSKTKKKGREHKECIVNGIREAVEKYSSVYVFSFENMRNIKFKEFRQQF 60

Query: 61  KSTSRLFFGANKVMQISLGRSDSDEIRPGLHNVSKLLHGNTGLCFTNLPKEEVERLFNEY 120
           +   + F G+NKVMQ++LGRS  DE+R G++ VSKLL G+TGL  T++PKEEVE LFN Y
Sbjct: 61  RHNGKFFLGSNKVMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAY 120

Query: 121 EDYDYARTGSAASEKVELKEGPLEQFSHEMEPSLRKLGLPVRLNKGVVELVSDFVVCEEG 180
           ED D++RTGS A E VELKEGPLEQF+HEMEP LRKL +PVRLNKG VELV+DFVVCEEG
Sbjct: 121 EDSDFSRTGSIAVETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEG 180

Query: 181 KSLSPESAGILRALGLRTAIFRLNLVCRWSPGDFELY 218
           K LSP+SA ILR L ++ A F+LNL+CRWSP DFELY
Sbjct: 181 KQLSPKSAHILRLLRMKMATFKLNLLCRWSPSDFELY 217

[Close]

BLAST of CSPI02G15560 vs. TAIR 10
Match: AT3G11250.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-12
Identity = 44/170 (25.88%), Postives = 83/170 (48.82%), Query Frame = 0


Query: 32  QAVENYNSVFVFTVENMRNLKFKELREQLKSTSRLFFGANKVMQISLGRSDSDEIRPGLH 91
           Q ++ Y  + V   +N+ + + + +R+ L+  S +  G N +M+ S+     +     + 
Sbjct: 19  QLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAIL 78

Query: 92  NVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEME 151
           N+  LL GN GL FT    +EV     +Y+    AR G  A   V ++ G     +  ++
Sbjct: 79  NLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLD 138

Query: 152 PS----LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLR 198
           PS     + L +P ++NKG VE+++   + ++G  +    A +L  LG+R
Sbjct: 139 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 183

[Close]

BLAST of CSPI02G15560 vs. TAIR 10
Match: AT3G09200.1 (Ribosomal protein L10 family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.6e-12
Identity = 44/170 (25.88%), Postives = 83/170 (48.82%), Query Frame = 0


Query: 32  QAVENYNSVFVFTVENMRNLKFKELREQLKSTSRLFFGANKVMQISLGRSDSDEIRPGLH 91
           Q ++ Y  + V   +N+ + + + +R+ L+  S +  G N +M+ S+     +     + 
Sbjct: 19  QLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAIL 78

Query: 92  NVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEME 151
           N+  LL GN GL FT    +EV     +Y+    AR G  A   V ++ G     +  ++
Sbjct: 79  NLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLD 138

Query: 152 PS----LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLR 198
           PS     + L +P ++NKG VE+++   + ++G  +    A +L  LG+R
Sbjct: 139 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 183

[Close]

BLAST of CSPI02G15560 vs. TAIR 10
Match: AT3G09200.2 (Ribosomal protein L10 family protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.3e-06
Identity = 33/110 (30.00%), Postives = 55/110 (50.00%), Query Frame = 0


Query: 92  NVSKLLHGNTGLCFTNLPKEEVERLFNEYEDYDYARTGSAASEKVELKEGPLEQFSHEME 151
           N+  LL GN GL FT    +EV     +Y+    AR G  A   V ++ G     +  ++
Sbjct: 46  NLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPG-----NTGLD 105

Query: 152 PS----LRKLGLPVRLNKGVVELVSDFVVCEEGKSLSPESAGILRALGLR 198
           PS     + L +P ++NKG VE+++   + ++G  +    A +L  LG+R
Sbjct: 106 PSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIR 150

The following BLAST results are available for this feature:

BLAST of CSPI02G15560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FV84	8.5e-56	50.00	mRNA turnover protein 4 homolog OS=Bos taurus OX=9913 GN=MRTO4 PE=2 SV=1	[more]
Q9UKD2	4.2e-55	49.57	mRNA turnover protein 4 homolog OS=Homo sapiens OX=9606 GN=MRTO4 PE=1 SV=2	[more]
Q9D0I8	2.1e-54	49.57	mRNA turnover protein 4 homolog OS=Mus musculus OX=10090 GN=Mrto4 PE=1 SV=1	[more]
Q86HD3	2.9e-40	37.96	Ribosome assembly factor mrt4 OS=Dictyostelium discoideum OX=44689 GN=mrt4 PE=3 ...	[more]
Q9USZ6	3.8e-32	34.23	Ribosome assembly factor mrt4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of CSPI02G15560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DT71	1.7e-115	91.27	Ribosome assembly factor mrt4 OS=Momordica charantia OX=3673 GN=LOC111024162 PE=...	[more]
A0A6J1F4Z2	1.9e-114	90.39	Ribosome assembly factor mrt4 OS=Cucurbita moschata OX=3662 GN=LOC111440919 PE=3...	[more]
A0A6J1I1E2	1.6e-113	89.96	Ribosome assembly factor mrt4 OS=Cucurbita maxima OX=3661 GN=LOC111468997 PE=3 S...	[more]
A0A0A0LM77	6.6e-104	95.65	Ribosome assembly factor mrt4 OS=Cucumis sativus OX=3659 GN=Csa_2G302060 PE=3 SV...	[more]
A0A2P6PDT8	8.4e-99	77.73	Ribosome assembly factor mrt4 OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g022425...	[more]

BLAST of CSPI02G15560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649395.1	1.3e-122	99.13	mRNA turnover protein 4 homolog [Cucumis sativus] >KAE8651976.1 hypothetical pro...	[more]
XP_038902849.1	3.7e-117	93.89	mRNA turnover protein 4 homolog [Benincasa hispida]	[more]
XP_022157470.1	3.5e-115	91.27	mRNA turnover protein 4 homolog [Momordica charantia]	[more]
XP_022933518.1	3.8e-114	90.39	mRNA turnover protein 4 homolog [Cucurbita moschata] >KAG6588508.1 mRNA turnover...	[more]
XP_023529350.1	1.1e-113	89.96	mRNA turnover protein 4 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI02G15560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25260.1	4.0e-85	70.05	Ribosomal protein L10 family protein	[more]
AT3G11250.1	2.0e-12	25.88	Ribosomal protein L10 family protein	[more]
AT3G09200.1	2.6e-12	25.88	Ribosomal protein L10 family protein	[more]
AT3G09200.2	1.3e-06	30.00	Ribosomal protein L10 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 19..120 e-value: 1.7E-19 score: 69.8
IPR043164	50S ribosomal protein L10, insertion domain superfamily	GENE3D	3.90.105.20		coord: 125..198 e-value: 6.5E-68 score: 229.9
IPR040637	60S ribosomal protein L10P, insertion domain	PFAM	PF17777	RL10P_insert	coord: 126..195 e-value: 5.0E-22 score: 77.7
IPR043141	Ribosomal protein L10-like domain superfamily	GENE3D	3.30.70.1730		coord: 30..210 e-value: 6.5E-68 score: 229.9
IPR043141	Ribosomal protein L10-like domain superfamily	SUPERFAMILY	160369	Ribosomal protein L10-like	coord: 20..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR45841:SF4	RIBOSOME ASSEMBLY FACTOR MRT4	coord: 1..228
None	No IPR available	PANTHER	PTHR45841	MRNA TURNOVER PROTEIN 4 MRTO4	coord: 1..228
IPR033867	Ribosome assembly factor Mrt4	CDD	cd05796	Ribosomal_P0_like	coord: 21..184 e-value: 9.49664E-85 score: 247.106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G15560.1	CSPI02G15560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor