CSPI02G15220 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G15220
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 14816843 .. 14817161 (+)
RNA-Seq Expression	CSPI02G15220
Synteny	CSPI02G15220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTAAGAAGACATTAGCATTTTCATGCAATAATCTTCTCCAGCTATTGGCCTTCATCTTTCTCTTTTTTCTTCTCATCACAACCACAGGTATTGCTTGTTTATTTCGCTCTCCAATTATTTTAGAGGAATTGAACAGTAACTTATTGTTATTGCTTGTTGTACGTTTTAGGTTCTTCAGCAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGACGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAACGACTTGGTGACGATGGATTATACTCCGGCCAGGAAGAACCATCCAATTCATAACTAG

mRNA sequence

ATGGTTCTTAAGAAGACATTAGCATTTTCATGCAATAATCTTCTCCAGCTATTGGCCTTCATCTTTCTCTTTTTTCTTCTCATCACAACCACAGGTTCTTCAGCAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGACGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAACGACTTGGTGACGATGGATTATACTCCGGCCAGGAAGAACCATCCAATTCATAACTAG

Coding sequence (CDS)

ATGGTTCTTAAGAAGACATTAGCATTTTCATGCAATAATCTTCTCCAGCTATTGGCCTTCATCTTTCTCTTTTTTCTTCTCATCACAACCACAGGTTCTTCAGCAAGGAGTTTAGTAGAAGGGAGGAGTCGAAATGACGACGATCCTTACGTCAAAAACCATAGCGGAGTGATTGGAAACGACTTGGTGACGATGGATTATACTCCGGCCAGGAAGAACCATCCAATTCATAACTAG

Protein sequence

MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDDDPYVKNHSGVIGNDLVTMDYTPARKNHPIHN*

Homology

[Close]

BLAST of CSPI02G15220 vs. ExPASy TrEMBL
Match: A0A0A0LM46 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 3.8e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDDDPYVKNHSGVIGN 60
          MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDDDPYVKNHSGVIGN
Sbjct: 1  MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDDDPYVKNHSGVIGN 60

Query: 61 DLVTMDYTPARKNHPIHN 79
          DLVTMDYTPARKNHPIHN
Sbjct: 61 DLVTMDYTPARKNHPIHN 78

[Close]

BLAST of CSPI02G15220 vs. ExPASy TrEMBL
Match: A0A444ZXP2 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g063575 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.2e-05
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 7  LAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDD-------DPYVKNHSG--- 66
          L    N LL ++AF+ L F+ +T  G S R +   ++  DD       + + +NH G   
Sbjct: 4  LLLPMNRLLLVVAFLLLCFMSMTARGRSLREIATNKNGVDDGEKGHQSNVFKRNHEGTQE 63

Query: 67 VIGNDLVTMDYTPARKNHPIHN 79
          +I  D+ TMDYTPA+KN PIHN
Sbjct: 64 IISGDIDTMDYTPAKKNPPIHN 85

[Close]

BLAST of CSPI02G15220 vs. NCBI nr
Match: KGN62099.1 (hypothetical protein Csa_006414 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 7.9e-35
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDDDPYVKNHSGVIGN 60
          MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDDDPYVKNHSGVIGN
Sbjct: 1  MVLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDDDPYVKNHSGVIGN 60

Query: 61 DLVTMDYTPARKNHPIHN 79
          DLVTMDYTPARKNHPIHN
Sbjct: 61 DLVTMDYTPARKNHPIHN 78

[Close]

BLAST of CSPI02G15220 vs. NCBI nr
Match: KAG6571378.1 (hypothetical protein SDJN03_30293, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-17
Identity = 48/78 (61.54%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 2  VLKKTLAFSCNNLLQLLAFIFLFFLLITTTGSS-ARSLVEGRSRNDDDPYVKNHSGVIGN 61
          +++K  A SCN  LQLL FIFLFFLL+T TGSS  R L+EG SR +++P V+NH GV+GN
Sbjct: 1  MVEKVSAVSCNGFLQLLLFIFLFFLLVTATGSSGGRRLIEGTSRTEENPLVENHDGVLGN 60

Query: 62 DLVTMDYTPARKNHPIHN 79
          DLVTM YT A+ N P+HN
Sbjct: 61 DLVTMHYTSAKSNRPVHN 78

[Close]

BLAST of CSPI02G15220 vs. NCBI nr
Match: KAG6605285.1 (hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 67.4 bits (163), Expect = 6.3e-08
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 2  VLKKTLAFSCNNLLQLLAFIFLFFLLITTTGS-SARSLVEGRSRNDDDPYVKNHSGVI-- 61
          ++ K    S   LL+LL+ +FLF LLITTTGS   R+L+E    +++DP      G +  
Sbjct: 1  MVMKASKLSFYRLLRLLSLLFLFILLITTTGSLGGRTLLEKTGHSEEDPLDIVRGGGLEN 60

Query: 62 GNDLVTMDYTPARKNHPIHN 79
           NDLVTMDYTPA KN PIHN
Sbjct: 61 ANDLVTMDYTPATKNRPIHN 80

[Close]

BLAST of CSPI02G15220 vs. NCBI nr
Match: KAG6605284.1 (hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 35/81 (43.21%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 2  VLKKTLAFSCNNLLQLLAFIFLFFLLITTTGS-SARSLVEGRSRNDDDPYVK-NHSGVIG 61
          ++ K    SC  LL+LL  +FLF LL+TT GS  A SL+E    +++D     +H G + 
Sbjct: 1  MVPKASTLSCVRLLRLLPLLFLFILLVTTPGSFGAPSLLEKTRHSEEDQLATISHGGALE 60

Query: 62 N--DLVTMDYTPARKNHPIHN 79
          N  DL  MDYTPA  + P+HN
Sbjct: 61 NAYDLGAMDYTPAGPSPPVHN 81

[Close]

BLAST of CSPI02G15220 vs. NCBI nr
Match: QHO02460.1 (Root meristem growth factor [Arachis hypogaea])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 31/77 (40.26%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 12 NNLLQLLAFIFLFFLLITTTGSSARSLVEGRSRNDD-------DPYVKNHSG---VIGND 71
          N LL ++AF+ L F+ +T  G S R +   ++  DD       + + +NH G   +I  D
Sbjct: 2  NRLLLVVAFLLLCFMSMTARGRSLREIATNKNGVDDGEKGHQSNVFKRNHEGTQEIISGD 61

Query: 72 LVTMDYTPARKNHPIHN 79
          + TMDYTPA+KN PIHN
Sbjct: 62 IDTMDYTPAKKNPPIHN 78

The following BLAST results are available for this feature:

BLAST of CSPI02G15220 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G15220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM46	3.8e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297230 PE=4 SV=1	[more]
A0A444ZXP2	9.2e-05	39.02	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g063575 PE=4 SV=1	[more]

BLAST of CSPI02G15220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62099.1	7.9e-35	100.00	hypothetical protein Csa_006414 [Cucumis sativus]	[more]
KAG6571378.1	2.0e-17	61.54	hypothetical protein SDJN03_30293, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605285.1	6.3e-08	50.00	hypothetical protein SDJN03_02602, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605284.1	1.1e-04	43.21	hypothetical protein SDJN03_02601, partial [Cucurbita argyrosperma subsp. sorori...	[more]
QHO02460.1	1.5e-04	40.26	Root meristem growth factor [Arachis hypogaea]	[more]

BLAST of CSPI02G15220 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 10..78
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 10..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G15220.1	CSPI02G15220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity