CSPI02G14780 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGATTTGCCAACCGTTGCTAAGCACAGAAGTCTCAATGCTCCATGGAGGTCCATCTGCAAAGGTTCAAACTGGTGTAAATCTCAATTGGGTTGGAAATTAAGCAATGGCAGGATGTTATCGTTTTGGCACAGAAACTGGAGCATTTATAGTCCTCTTTACACATATCCCTTTCTAGATTATATGCTCTCTCAACTCAGCAAAATGGCACCCTCAGGGATACATGGAACTCTGTAA ATGGATGATTTGCCAACCGTTGCTAAGCACAGAAGTCTCAATGCTCCATGGAGGTCCATCTGCAAAGGTTCAAACTGGTGTAAATCTCAATTGGGTTGGAAATTAAGCAATGGCAGGATGTTATCGTTTTGGCACAGAAACTGGAGCATTTATAGTCCTCTTTACACATATCCCTTTCTAGATTATATGCTCTCTCAACTCAGCAAAATGGCACCCTCAGGGATACATGGAACTCTGTAA ATGGATGATTTGCCAACCGTTGCTAAGCACAGAAGTCTCAATGCTCCATGGAGGTCCATCTGCAAAGGTTCAAACTGGTGTAAATCTCAATTGGGTTGGAAATTAAGCAATGGCAGGATGTTATCGTTTTGGCACAGAAACTGGAGCATTTATAGTCCTCTTTACACATATCCCTTTCTAGATTATATGCTCTCTCAACTCAGCAAAATGGCACCCTCAGGGATACATGGAACTCTGTAA MDDLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYTYPFLDYMLSQLSKMAPSGIHGTL* Homology
BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5A7U366 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001060 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0
BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5D3BJ44 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001280 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 6.5e-06 Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5A7VF18 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00550 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 8.4e-06 Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0
BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5A7UWW1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004130 PE=4 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 8.4e-06 Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05 Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of CSPI02G14780 vs. NCBI nr
Match: KAA0048676.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK18174.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05 Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0
BLAST of CSPI02G14780 vs. NCBI nr
Match: TYJ98385.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa]) HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05 Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0
BLAST of CSPI02G14780 vs. NCBI nr
Match: KAA0065894.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK15123.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05 Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0
BLAST of CSPI02G14780 vs. NCBI nr
Match: KAA0058105.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05 Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0
BLAST of CSPI02G14780 vs. NCBI nr
Match: TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]) HSP 1 Score: 58.9 bits (141), Expect = 2.3e-05 Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
|