CSPI02G14780 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G14780
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationChr2: 14453300 .. 14453539 (-)
RNA-Seq ExpressionCSPI02G14780
SyntenyCSPI02G14780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATTTGCCAACCGTTGCTAAGCACAGAAGTCTCAATGCTCCATGGAGGTCCATCTGCAAAGGTTCAAACTGGTGTAAATCTCAATTGGGTTGGAAATTAAGCAATGGCAGGATGTTATCGTTTTGGCACAGAAACTGGAGCATTTATAGTCCTCTTTACACATATCCCTTTCTAGATTATATGCTCTCTCAACTCAGCAAAATGGCACCCTCAGGGATACATGGAACTCTGTAA

mRNA sequence

ATGGATGATTTGCCAACCGTTGCTAAGCACAGAAGTCTCAATGCTCCATGGAGGTCCATCTGCAAAGGTTCAAACTGGTGTAAATCTCAATTGGGTTGGAAATTAAGCAATGGCAGGATGTTATCGTTTTGGCACAGAAACTGGAGCATTTATAGTCCTCTTTACACATATCCCTTTCTAGATTATATGCTCTCTCAACTCAGCAAAATGGCACCCTCAGGGATACATGGAACTCTGTAA

Coding sequence (CDS)

ATGGATGATTTGCCAACCGTTGCTAAGCACAGAAGTCTCAATGCTCCATGGAGGTCCATCTGCAAAGGTTCAAACTGGTGTAAATCTCAATTGGGTTGGAAATTAAGCAATGGCAGGATGTTATCGTTTTGGCACAGAAACTGGAGCATTTATAGTCCTCTTTACACATATCCCTTTCTAGATTATATGCTCTCTCAACTCAGCAAAATGGCACCCTCAGGGATACATGGAACTCTGTAA

Protein sequence

MDDLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYTYPFLDYMLSQLSKMAPSGIHGTL*
Homology
BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5A7U366 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001060 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.0e-06
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 4   LPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWS 50
           +P   K+ S NAPWRSI KG +W  S++ WK+++G   SFWH NW+
Sbjct: 248 IPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWA 293

BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5D3BJ44 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001280 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.5e-06
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0

Query: 5    PTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT 57
            P+  KH    APWRSI KG +W + ++ WK++ G+ LSFWH  W    PL T
Sbjct: 1094 PSDTKHSIAKAPWRSILKGRDWFEEKIKWKINKGKNLSFWHSKWIDSIPLST 1145

BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5A7VF18 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00550 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.4e-06
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 3   DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL 61
           D+PT  K+ ++  PWR I KG  W ++   WK++ G+ LSFW  NW+   PL + YP L
Sbjct: 238 DIPTKRKYSNMKTPWRQIIKGIGWFENHWRWKINEGKNLSFWLSNWTASGPLSSRYPRL 296

BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5A7UWW1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004130 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 8.4e-06
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 3   DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL 61
           DLP+     S  APWRSI    +W KS  GW L+NG  +SFW+ NWS    L T YP L
Sbjct: 108 DLPSNISSSSSKAPWRSIINNIDWFKSNQGWNLNNGDQISFWYSNWSPEGCLSTAYPRL 166

BLAST of CSPI02G14780 vs. ExPASy TrEMBL
Match: A0A5D3BL61 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001020 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.1e-05
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 3    DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL 61
            DLP+     S  APWRSI    +W KS  GW L+NG  +SFW+ NWS    L T YP L
Sbjct: 1470 DLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQISFWYSNWSPEGCLSTAYPRL 1528

BLAST of CSPI02G14780 vs. NCBI nr
Match: KAA0048676.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK18174.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 0

Query: 4   LPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWS 50
           +P   K+ S NAPWRSI KG +W  S++ WK+++G   SFWH NW+
Sbjct: 248 IPYFGKYSSSNAPWRSIIKGKDWFNSKIIWKINSGGSHSFWHSNWA 293

BLAST of CSPI02G14780 vs. NCBI nr
Match: TYJ98385.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-05
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 0

Query: 5    PTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT 57
            P+  KH    APWRSI KG +W + ++ WK++ G+ LSFWH  W    PL T
Sbjct: 1094 PSDTKHSIAKAPWRSILKGRDWFEEKIKWKINKGKNLSFWHSKWIDSIPLST 1145

BLAST of CSPI02G14780 vs. NCBI nr
Match: KAA0065894.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK15123.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 25/59 (42.37%), Postives = 36/59 (61.02%), Query Frame = 0

Query: 3   DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL 61
           D+PT  K+ ++  PWR I KG  W ++   WK++ G+ LSFW  NW+   PL + YP L
Sbjct: 238 DIPTKRKYSNMKTPWRQIIKGIGWFENHWRWKINEGKNLSFWLSNWTASGPLSSRYPRL 296

BLAST of CSPI02G14780 vs. NCBI nr
Match: KAA0058105.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-05
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 3   DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL 61
           DLP+     S  APWRSI    +W KS  GW L+NG  +SFW+ NWS    L T YP L
Sbjct: 108 DLPSNISSSSSKAPWRSIINNIDWFKSNQGWNLNNGDQISFWYSNWSPEGCLSTAYPRL 166

BLAST of CSPI02G14780 vs. NCBI nr
Match: TYK00493.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-05
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 0

Query: 3    DLPTVAKHRSLNAPWRSICKGSNWCKSQLGWKLSNGRMLSFWHRNWSIYSPLYT-YPFL 61
            DLP+     S  APWRSI    +W KS  GW L+NG  +SFW+ NWS    L T YP L
Sbjct: 1470 DLPSNISSSSSKAPWRSIINNIDWFKSNQGWDLNNGDQISFWYSNWSPEGCLSTAYPRL 1528

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U3665.0e-0650.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BJ446.5e-0646.15Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7VF188.4e-0642.37LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7UWW18.4e-0649.15LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BL611.1e-0549.15LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
KAA0048676.11.0e-0550.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK181... [more]
TYJ98385.11.3e-0546.15retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa][more]
KAA0065894.11.7e-0542.37LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK151... [more]
KAA0058105.11.7e-0549.15LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK00493.12.3e-0549.15LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G14780.1CSPI02G14780.1mRNA