CSPI02G13560 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G13560
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 13551270 .. 13551723 (+)
RNA-Seq Expression	CSPI02G13560
Synteny	CSPI02G13560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGTTTGGACGACGAACCGCTACAAGTTTTAGGTACAACCCATTTGTCGGTTTGCATTTATCTTCTACTTTATTTTGAGTATTATATTTGAAATTATTGTTCTAATTTCTCATTTGGGTTTTTTTTTTTTTTTTTTTCCCTTTCTCTAAAAGAAAAAAGTGGTGGGGTTTTGATTTTCTGTTTAATGGTTTGCTTTTCTGGATGCGTTAATGGGTTGTTGTTGTTGTTGTTGCTGCTTGTTTTTAAATACTTGTAGTTAAATACTGGTTCTGTCTTTCTTTCTTTTATGGGTGGAATAAGGTTTCTGAATCGTTTGTTGGTTGATTTTGGTAGTAGAGAGTGAAATGGTGGAGGGTTTTAAAAGTGGGGAGTCTCTTAATCAGAGGTTACCTGCTGAAGCCCCGGAAATTGAAGAAGATTCAAAATCTGTGGGTTTTGGGGGATTATAG

mRNA sequence

ATGCTGAGTTTGGACGACGAACCGCTACAAGTTTTAGTAGAGAGTGAAATGGTGGAGGGTTTTAAAAGTGGGGAGTCTCTTAATCAGAGGTTACCTGCTGAAGCCCCGGAAATTGAAGAAGATTCAAAATCTGTGGGTTTTGGGGGATTATAG

Coding sequence (CDS)

ATGCTGAGTTTGGACGACGAACCGCTACAAGTTTTAGTAGAGAGTGAAATGGTGGAGGGTTTTAAAAGTGGGGAGTCTCTTAATCAGAGGTTACCTGCTGAAGCCCCGGAAATTGAAGAAGATTCAAAATCTGTGGGTTTTGGGGGATTATAG

Protein sequence

MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL*

Homology

[Close]

BLAST of CSPI02G13560 vs. ExPASy TrEMBL
Match: A0A0A0LLN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270760 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.7e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 51
          MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL
Sbjct: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 50

[Close]

BLAST of CSPI02G13560 vs. NCBI nr
Match: KGN61934.1 (hypothetical protein Csa_005978 [Cucumis sativus])

HSP 1 Score: 99.4 bits (246), Expect = 9.7e-18
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0


Query: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 51
          MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL
Sbjct: 1  MLSLDDEPLQVLVESEMVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 50

[Close]

BLAST of CSPI02G13560 vs. NCBI nr
Match: KAG7027017.1 (hypothetical protein SDJN02_11025, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.7 bits (130), Expect = 2.7e-04
Identity = 28/34 (82.35%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 17 MVEGFKSGESLNQRLPAEAPEIEEDSKSVGFGGL 51
          MV G +SGESLNQRL AEA EIEEDSKSVGFG L
Sbjct: 26 MVGGLRSGESLNQRLSAEALEIEEDSKSVGFGRL 59

The following BLAST results are available for this feature:

BLAST of CSPI02G13560 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G13560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLN3	4.7e-18	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270760 PE=4 SV=1	[more]

BLAST of CSPI02G13560 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61934.1	9.7e-18	100.00	hypothetical protein Csa_005978 [Cucumis sativus]	[more]
KAG7027017.1	2.7e-04	82.35	hypothetical protein SDJN02_11025, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI02G13560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G13560.1	CSPI02G13560.1	mRNA