CSPI02G13180 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G13180
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Eukaryotic translation initiation factor 4C
Location	Chr2: 13259739 .. 13261778 (+)
RNA-Seq Expression	CSPI02G13180
Synteny	CSPI02G13180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTTATTTGAATCGGTCGTTTGTTGAACGCGTTCTCTCTCAGCTGGTTTAGGGTTCATCGTTCTCTCTTCTCGCGCTAGATCTTTCTCTCTCTCAGGTTCGTTTCTTTCTCTTAGGCCATTTATTAGAAGATCCTCTTCATTCTCCGATTTTCGTTCGGTGTTCGCCCTTGGTATCTCAGCAGACCTAGGAAGTTTGGTTTCCGTTTGGTGAATCTGTTTGGGGTATTACGAATTATATTTTGTACTGGCTTTCAGCATAGTCTTTTTCTTTCTGGGAATATATGCATCTGAAAATTTATTTGTTTGGCTTTTCTTTATAAAGTATGAGGACATATACATCTCGATAGCTAATCCTTGATTATAGTCTTTTTTTTTCTATGTTGTTTGAATCTGTTCTTTCATTTCATTAAATCTTTTGAATCTGAAATTTTATTTCTTGGATGAATTGCATACTGTTGAATTAGATGTTTATTGGTTAGATTGTTGATATTTGCCCTAAGTTCTATGGATGGGTTTGCGTTTTTCACCTTTTCGTTTGCCTTTTCTTTTGGCTGACGGCATCTTACATAGACTCTGCTCGAAAAGGTGCCGTGATTTTTTTCCTGGTTTTATCTGAGTTTGCACAATTTAGATTTGAAGTGATGATTTGTCTAAAATTCAATATCTATCGGCCATACTGTTTTTGTTATTTTGAGTTTTTCAGGATGACTGCTAGAGAATGAAAAATCTCGGAACATTGTGTTCTGTAGTTCAAGAATATTGTAGTTTGTTCTTTTCTAGACTATCTCATTTGATACAACCCTTTAAATTTAATCAAATTTTGTTAATATTCAAATCCTCGGACTTAGGCATTACTCTGGTTGCCCACTATTTTAAGCTTAGAAGCCTACTCTGGTTCACTTAAAATTTGCATGCTACTTATCTTATTTCACGTGACTCTTCACGTTTGTAGACATCAATTTTTCAGCCTTCAGGTAAATGAACACAAAAAGGAGTGAAGTCTGCCTTCTGTGTGATGGTCTTTTAAACAATTATAGGGATTAAGATGGTTTTTTTATTCAATGCATAGATATTAAATTAGAACGATGACGGTCATTAATATTAAAATTGACAATAGAAGGTTCCTTATATTATTTAGAGTATACATTAAAAACAGCCTGATTCTTGGCTTGGCAGGTTCCTGATCACCTTGTAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAGATTTTCAGTAACCTTTACTTTTAAAGTTTAGAGTTGTGTTTGTGTGGATGATTGGTTGCATGGATTTGCTCCTCTGTTGTACCATTTACTCTTCTACTCTGTTGGAGAATTGGTATTTATTGCATAAAATCCGGTATTGATATATACAAAAAAAAAAAAAAAATCTACATTAAAAATAATTCCTGGAATGGGCATGATAACATTATTTATATGTTATGTTTTAATTATACGTGGACAGAGTCTGTTCACAGGTTTCCCCTTGCATCCTAAAATTACCTCTGCCCAATGATGCAACAAACTCATGCTGTGGAGCAATCTTCTTTGATTTCTAATACTAGCTTTTGCCTCAACCACAATCATCCCCTTCTCTCTCGCTCTCTCACTCTCTCACTCTGCAAACA

mRNA sequence

CATTTTTATTTGAATCGGTCGTTTGTTGAACGCGTTCTCTCTCAGCTGGTTTAGGGTTCATCGTTCTCTCTTCTCGCGCTAGATCTTTCTCTCTCTCAGGTTCCTGATCACCTTGTAAACATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAGATTTTCAGTAACCTTTACTTTTAAAGTTTAGAGTTGTGTTTGTGTGGATGATTGGTTGCATGGATTTGCTCCTCTGTTGTACCATTTACTCTTCTACTCTGTTGGAGAATTGGTATTTATTGCATAAAATCCGGTATTGATATATACAAAAAAAAAAAAAAAATCTACATTAAAAATAATTCCTGGAATGGGCATGATAACATTATTTATATGTTATGTTTTAATTATACGTGGACAGAGTCTGTTCACAGGTTTCCCCTTGCATCCTAAAATTACCTCTGCCCAATGATGCAACAAACTCATGCTGTGGAGCAATCTTCTTTGATTTCTAATACTAGCTTTTGCCTCAACCACAATCATCCCCTTCTCTCTCGCTCTCTCACTCTCTCACTCTGCAAACA

Coding sequence (CDS)

ATGCCAAAGAACAAGGGAAAGGGAGGAAAGAACAGAAAGAGAGGAAAGAACGAAGCAGATGATGAGAAGCGTGAACTTGTTTTTAAGGAAGATGGTCAGGAGTATGCCCAAGTTCTCAGAATGTTAGGGAATGGTCGATGTGAGGCGATGTGCATCGATGGGACAAAGCGTCTTTGTCATATCCGGGGGAAGATGCACAAAAAAGTTTGGATTGCAGCTGGTGATATAATTCTTGTGGGTCTTCGTGATTACCAGGATGACAAAGCTGATGTTATCCTCAAGTATATGCCTGACGAAGCCAGGCTGTTGAAGGCATATGGGGAACTTCCCGAGAGCACACGTCTCAATGAGGGTATTGCTGGTGGTATCGATGATGAGGATGATGGTGCTGGTGATGATTATATTGAGTTTGAGGATGAAGATATCGACAAGATTTAG

Protein sequence

MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIAGGIDDEDDGAGDDYIEFEDEDIDKI*

Homology

[Close]

BLAST of CSPI02G13180 vs. ExPASy Swiss-Prot
Match: P56331 (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=2 SV=2)

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-69
Identity = 135/146 (92.47%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGI- 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIG 120

Query: 121 AGGIDDEDDGAGDDYIEFEDEDIDKI 146
           AGG+D+E D A +DYIEFEDEDIDKI
Sbjct: 121 AGGLDEEMDTA-NDYIEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. ExPASy Swiss-Prot
Match: P47815 (Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV=2)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 125/146 (85.62%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQV RMLGNGRCEA+C+DGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLNEG+ 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLNEGV- 120

Query: 121 GGIDDEDDGAGD-DYIEFEDEDIDKI 146
             +D  ++G GD DYI+FEDEDIDKI
Sbjct: 121 -DVDGPEEGEGDSDYIQFEDEDIDKI 144

[Close]

BLAST of CSPI02G13180 vs. ExPASy Swiss-Prot
Match: P47813 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=9606 GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
            G  D+D+   DD I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of CSPI02G13180 vs. ExPASy Swiss-Prot
Match: Q8BMJ3 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10090 GN=Eif1ax PE=2 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
            G  D+D+   DD I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of CSPI02G13180 vs. ExPASy Swiss-Prot
Match: Q5RA42 (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=9601 GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 203.4 bits (516), Expect = 1.8e-51
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNR+RGKNE + EKRELVFKEDGQEYAQV++MLGNGR EAMC DG KRLCH
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++NE   
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDT 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
            G  D+D+   DD I  +DEDID I
Sbjct: 121 FGPGDDDEIQFDD-IGDDDEDIDDI 144

[Close]

BLAST of CSPI02G13180 vs. ExPASy TrEMBL
Match: A0A0A0LJ19 (Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_2G263950 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.0e-75
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GGIDDEDDGAGD+YIEFEDEDIDKI
Sbjct: 121 GGIDDEDDGAGDNYIEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. ExPASy TrEMBL
Match: A0A1S3C6N4 (Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103497302 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.2e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GGIDDEDDG GDDY+EFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. ExPASy TrEMBL
Match: A0A6P6W0N6 (Eukaryotic translation initiation factor 4C OS=Coffea arabica OX=13443 GN=LOC113728158 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.2e-75
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. ExPASy TrEMBL
Match: A0A5A7TS70 (Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G002160 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.2e-75
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GGIDDEDDG GDDY+EFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. ExPASy TrEMBL
Match: B9SSH7 (Eukaryotic translation initiation factor 4C OS=Ricinus communis OX=3988 GN=RCOM_0510890 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. NCBI nr
Match: XP_004147021.1 (eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_011649283.1 eukaryotic translation initiation factor 1A [Cucumis sativus] >KGN61900.1 hypothetical protein Csa_006324 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GGIDDEDDGAGD+YIEFEDEDIDKI
Sbjct: 121 GGIDDEDDGAGDNYIEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. NCBI nr
Match: XP_008457652.1 (PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >XP_008457653.1 PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >KAA0045698.1 eukaryotic translation initiation factor 1A [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GGIDDEDDG GDDY+EFEDEDIDKI
Sbjct: 121 GGIDDEDDGGGDDYLEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. NCBI nr
Match: XP_022896454.1 (eukaryotic translation initiation factor 1A [Olea europaea var. sylvestris] >XP_027108490.1 eukaryotic translation initiation factor 1A [Coffea arabica] >XP_027115343.1 eukaryotic translation initiation factor 1A [Coffea arabica] >XP_027163704.1 eukaryotic translation initiation factor 1A [Coffea eugenioides] >CAA2973155.1 eukaryotic translation initiation factor 1A [Olea europaea subsp. europaea])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 143/145 (98.62%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. NCBI nr
Match: XP_010912398.1 (eukaryotic translation initiation factor 1A [Elaeis guineensis] >KAG0449257.1 hypothetical protein HPP92_027374 [Vanilla planifolia])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. NCBI nr
Match: XP_002528946.1 (eukaryotic translation initiation factor 1A [Ricinus communis] >EEF33420.1 eif-1a, putative [Ricinus communis])

HSP 1 Score: 288.9 bits (738), Expect = 2.5e-74
Identity = 142/145 (97.93%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           GG+D+EDDGAGDDYIEFEDEDIDKI
Sbjct: 121 GGLDEEDDGAGDDYIEFEDEDIDKI 145

[Close]

BLAST of CSPI02G13180 vs. TAIR 10
Match: AT2G04520.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-72
Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           G ++D+DD   DDY+EFEDEDID+I
Sbjct: 121 GDLEDDDDNNDDDYVEFEDEDIDRI 145

[Close]

BLAST of CSPI02G13180 vs. TAIR 10
Match: AT5G35680.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 268.5 bits (685), Expect = 3.2e-72
Identity = 131/145 (90.34%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           G +DD+DD  G+DYIEFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of CSPI02G13180 vs. TAIR 10
Match: AT5G35680.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 268.5 bits (685), Expect = 3.2e-72
Identity = 131/145 (90.34%), Postives = 138/145 (95.17%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDDGAGDDYIEFEDEDIDKI 146
           G +DD+DD  G+DYIEFEDEDID+I
Sbjct: 121 GDLDDDDDVVGEDYIEFEDEDIDRI 145

[Close]

BLAST of CSPI02G13180 vs. TAIR 10
Match: AT5G35680.3 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 243.8 bits (621), Expect = 8.5e-65
Identity = 118/128 (92.19%), Postives = 123/128 (96.09%), Query Frame = 0


Query: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
           MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ MCIDG KRLCH
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60

Query: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLNEGIA 120
           IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYM DEARLLKAYGELPE+TRLNEGI 
Sbjct: 61  IRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIV 120

Query: 121 GGIDDEDD 129
           G +DD+DD
Sbjct: 121 GDLDDDDD 128

The following BLAST results are available for this feature:

BLAST of CSPI02G13180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56331	2.5e-69	92.47	Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia OX=3882 PE=...	[more]
P47815	1.3e-65	85.62	Eukaryotic translation initiation factor 1A OS=Triticum aestivum OX=4565 PE=1 SV...	[more]
P47813	1.8e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens OX=96...	[more]
Q8BMJ3	1.8e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus OX=10...	[more]
Q5RA42	1.8e-51	73.79	Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii OX=96...	[more]

BLAST of CSPI02G13180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ19	7.0e-75	99.31	Eukaryotic translation initiation factor 4C OS=Cucumis sativus OX=3659 GN=Csa_2G...	[more]
A0A1S3C6N4	9.2e-75	98.62	Eukaryotic translation initiation factor 4C OS=Cucumis melo OX=3656 GN=LOC103497...	[more]
A0A6P6W0N6	9.2e-75	98.62	Eukaryotic translation initiation factor 4C OS=Coffea arabica OX=13443 GN=LOC113...	[more]
A0A5A7TS70	9.2e-75	98.62	Eukaryotic translation initiation factor 4C OS=Cucumis melo var. makuwa OX=11946...	[more]
B9SSH7	1.2e-74	97.93	Eukaryotic translation initiation factor 4C OS=Ricinus communis OX=3988 GN=RCOM_...	[more]

BLAST of CSPI02G13180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147021.1	1.4e-74	99.31	eukaryotic translation initiation factor 1A [Cucumis sativus] >XP_011649283.1 eu...	[more]
XP_008457652.1	1.9e-74	98.62	PREDICTED: eukaryotic translation initiation factor 1A [Cucumis melo] >XP_008457...	[more]
XP_022896454.1	1.9e-74	98.62	eukaryotic translation initiation factor 1A [Olea europaea var. sylvestris] >XP_...	[more]
XP_010912398.1	2.5e-74	97.93	eukaryotic translation initiation factor 1A [Elaeis guineensis] >KAG0449257.1 hy...	[more]
XP_002528946.1	2.5e-74	97.93	eukaryotic translation initiation factor 1A [Ricinus communis] >EEF33420.1 eif-1...	[more]

BLAST of CSPI02G13180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04520.1	1.1e-72	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.1	3.2e-72	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.2	3.2e-72	90.34	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G35680.3	8.5e-65	92.19	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001253	Translation initiation factor 1A (eIF-1A)	SMART	SM00652	eIF1neu4	coord: 28..110 e-value: 7.0E-49 score: 178.4
IPR001253	Translation initiation factor 1A (eIF-1A)	TIGRFAM	TIGR00523	TIGR00523	coord: 14..110 e-value: 8.1E-35 score: 116.8
IPR001253	Translation initiation factor 1A (eIF-1A)	PANTHER	PTHR21668	EIF-1A	coord: 1..145
IPR001253	Translation initiation factor 1A (eIF-1A)	HAMAP	MF_00216	aIF_1A	coord: 16..110 score: 18.345238
IPR001253	Translation initiation factor 1A (eIF-1A)	CDD	cd05793	S1_IF1A	coord: 33..109 e-value: 9.57617E-42 score: 131.492
None	No IPR available	GENE3D	2.40.50.140		coord: 2..145 e-value: 5.5E-58 score: 196.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21668:SF20	EUKARYOTIC TRANSLATION INITIATION FACTOR 1A	coord: 1..145
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 32..93 e-value: 4.8E-22 score: 77.6
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 22..96 score: 31.623802
IPR018104	Translation initiation factor 1A (eIF-1A), conserved site	PROSITE	PS01262	IF1A	coord: 41..63
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G13180.1	CSPI02G13180.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding