CSPI02G12810 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G12810
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag/pol protein
LocationChr2: 13021367 .. 13021630 (+)
RNA-Seq ExpressionCSPI02G12810
SyntenyCSPI02G12810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGGCTTTGTGCCGTGCATAGGAGCGGCCTCCCTTCGGAGAGTGTTTGCATGGATCAAAATCAAGGGGAATAGGGGAAGTAGTTCATAGTAAGTGGGTGAGGGATTTGTGGCAGCACATCCCACGGTCTCTTCCATTAGGTCGCACCGTGAGATTTCTATAATATGCCTGCTTGTCTGCCCTGGAGCGACGTTCCCTTCGGAGGGTTGTATTATAGGATTCGGAACACCGCGAACTCCAAAACTGGATAGGATTTCTTAG

mRNA sequence

ATGCAGGGCTTTGTGCCGTGCATAGGAGCGGCCTCCCTTCGGAGAGTGTTTGCATGGATCAAAATCAAGGGGAATAGGGGAACACATCCCACGGTCTCTTCCATTAGGTCGCACCGTGAGATTTCTATAATATGCCTGCTTGTCTGCCCTGGAGCGACGTTCCCTTCGGAGGGTTGTATTATAGGATTCGGAACACCGCGAACTCCAAAACTGGATAGGATTTCTTAG

Coding sequence (CDS)

ATGCAGGGCTTTGTGCCGTGCATAGGAGCGGCCTCCCTTCGGAGAGTGTTTGCATGGATCAAAATCAAGGGGAATAGGGGAACACATCCCACGGTCTCTTCCATTAGGTCGCACCGTGAGATTTCTATAATATGCCTGCTTGTCTGCCCTGGAGCGACGTTCCCTTCGGAGGGTTGTATTATAGGATTCGGAACACCGCGAACTCCAAAACTGGATAGGATTTCTTAG

Protein sequence

MQGFVPCIGAASLRRVFAWIKIKGNRGTHPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRIS*
Homology
BLAST of CSPI02G12810 vs. ExPASy TrEMBL
Match: A0A5D3CWX9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00120 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.4e-13
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 29 HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR 74
          HPTVS I SHREI I+ LLVCPGATFPSEGCIIGFGTPRTP LDR
Sbjct: 10 HPTVSFIGSHREIPIMRLLVCPGATFPSEGCIIGFGTPRTPYLDR 54

BLAST of CSPI02G12810 vs. ExPASy TrEMBL
Match: A0A5D3D345 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001190 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 29 HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRIS 76
          HPT+SSI  HREI I+ LLVCP AT+PSEGCII FGTPRTP LDR S
Sbjct: 4  HPTISSIGLHREILIMRLLVCPRATYPSEGCIIRFGTPRTPYLDRAS 50

BLAST of CSPI02G12810 vs. ExPASy TrEMBL
Match: A0A5D3DQ34 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00130 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 4.5e-09
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 29 HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRI 75
          HPTVSSI  HREI I+ LLVCPG T  SEGCII   TPRTP LDR+
Sbjct: 4  HPTVSSIGPHREIPIMRLLVCPGVTCHSEGCIIELETPRTPYLDRL 49

BLAST of CSPI02G12810 vs. ExPASy TrEMBL
Match: A0A5A7SPT6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G00190 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.6e-08
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 29  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR 74
           H +VS  RSH  I I+CLLVCPGATFP +GCIIGF T RTP +DR
Sbjct: 198 HGSVS--RSHHLIPIMCLLVCPGATFPLKGCIIGFETSRTPYMDR 240

BLAST of CSPI02G12810 vs. ExPASy TrEMBL
Match: A0A5D3DHM9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G001920 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.8e-04
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 46 LLVCPGATFPSEGCIIGFGTPRTPKLDR 74
          LLVC  ATFPSEGCIIGFGT R+PK+DR
Sbjct: 3  LLVCFRATFPSEGCIIGFGTSRSPKMDR 30

BLAST of CSPI02G12810 vs. NCBI nr
Match: KAA0042320.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK15444.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.8e-13
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = 0

Query: 29 HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR 74
          HPTVS I SHREI I+ LLVCPGATFPSEGCIIGFGTPRTP LDR
Sbjct: 10 HPTVSFIGSHREIPIMRLLVCPGATFPSEGCIIGFGTPRTPYLDR 54

BLAST of CSPI02G12810 vs. NCBI nr
Match: KAA0041922.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK17854.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-11
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0

Query: 29 HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRIS 76
          HPT+SSI  HREI I+ LLVCP AT+PSEGCII FGTPRTP LDR S
Sbjct: 4  HPTISSIGLHREILIMRLLVCPRATYPSEGCIIRFGTPRTPYLDRAS 50

BLAST of CSPI02G12810 vs. NCBI nr
Match: KAA0055183.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25777.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 9.4e-09
Identity = 33/46 (71.74%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 29 HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDRI 75
          HPTVSSI  HREI I+ LLVCPG T  SEGCII   TPRTP LDR+
Sbjct: 4  HPTVSSIGPHREIPIMRLLVCPGVTCHSEGCIIELETPRTPYLDRL 49

BLAST of CSPI02G12810 vs. NCBI nr
Match: KAA0033202.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 31/45 (68.89%), Postives = 35/45 (77.78%), Query Frame = 0

Query: 29  HPTVSSIRSHREISIICLLVCPGATFPSEGCIIGFGTPRTPKLDR 74
           H +VS  RSH  I I+CLLVCPGATFP +GCIIGF T RTP +DR
Sbjct: 198 HGSVS--RSHHLIPIMCLLVCPGATFPLKGCIIGFETSRTPYMDR 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CWX91.4e-1386.67Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G0012... [more]
A0A5D3D3451.3e-1176.60Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G0011... [more]
A0A5D3DQ344.5e-0971.74Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G0013... [more]
A0A5A7SPT68.6e-0868.89Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1702G001... [more]
A0A5D3DHM95.8e-0482.14Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G0019... [more]
Match NameE-valueIdentityDescription
KAA0042320.12.8e-1386.67gag/pol protein [Cucumis melo var. makuwa] >TYK15444.1 gag/pol protein [Cucumis ... [more]
KAA0041922.12.6e-1176.60gag/pol protein [Cucumis melo var. makuwa] >TYK17854.1 gag/pol protein [Cucumis ... [more]
KAA0055183.19.4e-0971.74gag/pol protein [Cucumis melo var. makuwa] >TYK25777.1 gag/pol protein [Cucumis ... [more]
KAA0033202.11.8e-0768.89gag/pol protein [Cucumis melo var. makuwa] >TYK07502.1 gag/pol protein [Cucumis ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G12810.1CSPI02G12810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding