CSPI02G12200 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G12200
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	transcription factor RADIALIS-like
Location	Chr2: 12489618 .. 12491990 (+)
RNA-Seq Expression	CSPI02G12200
Synteny	CSPI02G12200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCTTAAGTAAACAAATCATTCAAAATAATTTCTCACTCTCCCTTTTTCCAAAGATTTTCCCTCTCTCTGCCCCCACTTATAAAATCCCTTCCCCCTTCTCCATACTCTTTCTTCTTCACCCCCTTTTCAATTAATCTCTTTTACCACTTTTGCCCCTCAACAATGGCTTCCATTTCCTCCTCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTAGCCAAAGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACACTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCCCTACAACCTCCAATGCTAACATCAAAGACCAAGAACAAAGGTACCTCTCTCGTCCTTCCTTCTTTTTTTTTTTCTTTTGAAGTTTTAACCTTTCCAAATATTAAAAATAATGTCTCAACTGCTAAACTATGTTCTTAAAAGTTTTTTTTTTACGACAGAAAAGTCCAACTTCTAAGTCGCTTTCAACTCACTTTTATTTTGGTTCGCTTTCCAGATTCTCTCTTCATATGTATCTCAATTGTTTTTTTTATCTTTTTCTTCTCTTCTCCACATTGTTCTTTTCCTTCAAAATCCTTAGAGCAGCTCCCTTTTTATACCTTATAAAAAGCTATACATCTTTTTTCACCTCCATCTACTTCCCCTCACTATGTATTTTCATGTCTTTTTTATAGAAAAAAAAGCATCAAACTATAATATATAAACAAACCAATTAAAAATCAATTTTCTTTATTACAAGCTGCACAAGTTTTTCTCTCATTTTCCTTCAATCACGTAGCAAAAATGATTTTTTTTTTTTGTCACGTGACAACTAGATGAATTGCACAAAGATAAGTGGGGTCGGATCTACGTCATTCATAGTATATAATTATATAATCGAAGAAAATGGTGTTTGAAAGTTGGTTTCATTTTTTTTTTTTTTTTTGGAGGATAATGGGTTTCAGAAAAAGAGAAAAGCATGCAATCCAATCATACCTCAATTGGTAAATGCAATGTTTTCTTTATATATATACATACATATATTATATATAAAAAGAAAAAAGAAAAAAAGTCAACAGTTTACGAGAAACCAAACCTCGTGCCAGTCACGTGGTTTCCTACCAATAGGGCTGATTAATTAATTATACCAATAATTGCATTCTTAATATTATAATAAACCCTAACAATTATGTATTAATTATTGGTGTTATCTAATCTTATACTAAAAGCAAGTTAATTAATTTTTTAATGTTGATATTTTGTTTTCCTGACAAATATCCTACTTGTCGGATTGTATTCTAAGAGTCCCATTACTCCCCACAACACAATACACTTCTTTTTTTCTTTTTTCTTTCCATTTTTGGCACCTTTTTATTCCTTAATTATTTCTTTTCTTAAATAATTTAATTGACCAAACTTTCAAATTATTATATATTTTATCTAGCAAATTTGAAGAAAAAAAATGATCTTAATTTAAATAATTGAGATCTTATTTGATAAGATTTTATTTCTAATTTTTTAGTTTTCGTTTAAGTTTGTTGCTCTCGTTTCAAAAACTAAAAAAGAAACACATTCGCTTCATTTATCTAAATCACTAAAGTCCTTTTTTTTTTTTTCTATTTATGACGTATATCTTTTTAATTATATATATAACAAAAAATGACAATAATGATCTTTTTGTCGTGTTTGCTTGTCCTTCTTGTACTACTAGCTATCAAACTAATTTAAAAAGATACCAAAATATCTACTTTAGTCTTTGAATTTAAAATTATATCCATTTTAGTTATTACAATTATTTTATTGTGGAATGTTGCTCATTCTTTATCCATTTAGTGTATGAAATTTCAATGCATATTTGAAGTCATGTCATCATTTGCCAAATAATTGAGATTGAAGCAATGTCAGTGATCAAAATAGTTATGGTTGTAAGTGATTGGATGAATATGAAAATTAAATTAAGTTTTTGAAAATTGCAATCATGGGCCTAACTTATTTAATTATTGCAGGATGAGAAACATGAAACTTCATTAAATTGGTTGAAATTGAAAGCAAATGGATGGAATTAAGAAGAATGAAAGTGGATTGGTGGTTGCTGTTTTTGCCTTTAAGATAACAAAAAGAAGAAAAAAAAAATTAATGTAGCCAAATTTGCAATTTTATGTTTTTTTTTTCTTCTCTTCCCCTTGAAGGTGTATTTGCCCAACTAAAGAGCTAATCAATGTAGAAGAATCAATTTGATTTACGTTTTTTTCATCTACTAATTTCCCCCT

mRNA sequence

GGTTCTTAAGTAAACAAATCATTCAAAATAATTTCTCACTCTCCCTTTTTCCAAAGATTTTCCCTCTCTCTGCCCCCACTTATAAAATCCCTTCCCCCTTCTCCATACTCTTTCTTCTTCACCCCCTTTTCAATTAATCTCTTTTACCACTTTTGCCCCTCAACAATGGCTTCCATTTCCTCCTCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTAGCCAAAGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACACTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCCCTACAACCTCCAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTTCATTAAATTGGTTGAAATTGAAAGCAAATGGATGGAATTAAGAAGAATGAAAGTGGATTGGTGGTTGCTGTTTTTGCCTTTAAGATAACAAAAAGAAGAAAAAAAAAATTAATGTAGCCAAATTTGCAATTTTATGTTTTTTTTTTCTTCTCTTCCCCTTGAAGGTGTATTTGCCCAACTAAAGAGCTAATCAATGTAGAAGAATCAATTTGATTTACGTTTTTTTCATCTACTAATTTCCCCCT

Coding sequence (CDS)

ATGGCTTCCATTTCCTCCTCCTCCTCTTCTTGGACTCCTAACCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTTGACAAAGACACCCCTGATCGCTGGCTCAATGTAGCCAAAGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACACTTCGACCGTCTCGTCGAAGATGTCAAACACATTGAATCCGGCCGCGTTCCTTTCCCTAAATACACCTCCTCCTCCTCCTCCCCTACAACCTCCAATGCTAACATCAAAGACCAAGAACAAAGGATGAGAAACATGAAACTTCATTAA

Protein sequence

MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH*

Homology

[Close]

BLAST of CSPI02G12200 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-25
Identity = 57/100 (57.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED 60
           MAS   S   W+  +NKAFERALAV+DKDTPDRW NVA+AV  G+TP+EVK+H++ LVED
Sbjct: 1   MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVED 60

Query: 61  VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           +K+IESG+VPFP Y        T+  N+K  E+R RN+K+
Sbjct: 61  IKYIESGKVPFPNY-------RTTGGNMKTDEKRFRNLKI 92

[Close]

BLAST of CSPI02G12200 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.5e-25
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 5   SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHI 64
           S  S SWT  QNKAFERALAV+D+DTPDRW NVA+AV GGKTP+E KR +D LV D++ I
Sbjct: 8   SYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDLLVRDIESI 67

Query: 65  ESGRVPFPKYTSSSSSPTTSNAN---IKDQEQRMRNMKL 101
           E+G VPFP Y +     TT N+N   ++D+E+RMR+MKL
Sbjct: 68  ENGHVPFPDYKT-----TTGNSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of CSPI02G12200 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.0e-24
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 5   SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHI 64
           S SS SWT  QNKAFE+ALA +D+DTP+RW NVAK V GGKT +EVKRH++ LV+D+  I
Sbjct: 8   SQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQDINSI 67

Query: 65  ESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           E+G VPFP Y +S      +N  +  +E+RMRNM+L
Sbjct: 68  ENGHVPFPNYRTSGG---CTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of CSPI02G12200 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.1e-22
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVE 60
           MAS S SS S WT +QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVKRH+D LVE
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 61  DVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           D+ +IE+GRVP P Y +  S+  + N       ++M+N+K+
Sbjct: 61  DLINIETGRVPLPNYKTFESNSRSIN---DFDTRKMKNLKI 97

[Close]

BLAST of CSPI02G12200 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.7e-21
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MASIS-SSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVE 60
           MAS S SSSSSWT  QNK FERALAV+DKDTPDRW NVAKAV G K+ +EVKRH+D LVE
Sbjct: 1   MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVE 60

Query: 61  DVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQR-MRNMKL 101
           D+ +IE   VP PKY +      + +  I D + R M+NM++
Sbjct: 61  DLMNIEQDLVPLPKYKTVDVG--SKSRGIDDFDLRLMKNMRI 99

[Close]

BLAST of CSPI02G12200 vs. ExPASy TrEMBL
Match: A0A0A0LL58 (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 2.7e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED 60
           MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED
Sbjct: 1   MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED 60

Query: 61  VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 102
           VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH
Sbjct: 61  VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of CSPI02G12200 vs. ExPASy TrEMBL
Match: A0A1S3CDK8 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.0e-43
Identity = 98/110 (89.09%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60
           MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSP----TTSNANIKDQEQRMRNMKLH 102
           RLVEDVKHIESGRVPFPKYTSSSSS     T+SNANIKDQEQRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 110

[Close]

BLAST of CSPI02G12200 vs. ExPASy TrEMBL
Match: A0A6J1FXX9 (protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.8e-38
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60
           MAS++SS  SSSWTP QNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LV
Sbjct: 1   MASMASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           EDVKHIESG VPFP Y+S++S+  TSNANI DQEQRMR++KL
Sbjct: 61  EDVKHIESGHVPFPNYSSTASASGTSNANINDQEQRMRDLKL 102

[Close]

BLAST of CSPI02G12200 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.3e-38
Identity = 84/102 (82.35%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60
           MAS+SSS  SSSWTP +NKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LV
Sbjct: 1   MASMSSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           EDVKHIE G VPFP Y+S++S+  TSNANI DQEQRMRN+KL
Sbjct: 61  EDVKHIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKL 102

[Close]

BLAST of CSPI02G12200 vs. ExPASy TrEMBL
Match: A0A6J1G543 (transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.5e-34
Identity = 85/103 (82.52%), Postives = 89/103 (86.41%), Query Frame = 0


Query: 1   MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60
           MASISSS  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVAKAV G KT DEVKRHF+ LV
Sbjct: 1   MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLV 60

Query: 61  EDVKHIESGRVPFPKYTSSSSS-PTTSNANIKDQEQRMRNMKL 101
           EDVKHIESG VPFP YTSSSSS P TS+ NI  QEQRMRNMKL
Sbjct: 61  EDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL 102

[Close]

BLAST of CSPI02G12200 vs. NCBI nr
Match: XP_004148844.1 (transcription factor RADIALIS [Cucumis sativus] >KGN61794.1 hypothetical protein Csa_006459 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 5.6e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED 60
           MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED
Sbjct: 1   MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED 60

Query: 61  VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 102
           VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH
Sbjct: 61  VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of CSPI02G12200 vs. NCBI nr
Match: XP_008460938.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 98/110 (89.09%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MASISSS-----SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFD 60
           MASISSS     SSSWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD
Sbjct: 1   MASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60

Query: 61  RLVEDVKHIESGRVPFPKYTSSSSSP----TTSNANIKDQEQRMRNMKLH 102
           RLVEDVKHIESGRVPFPKYTSSSSS     T+SNANIKDQEQRMRNMKLH
Sbjct: 61  RLVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 110

[Close]

BLAST of CSPI02G12200 vs. NCBI nr
Match: XP_038902123.1 (protein RADIALIS-like 2 [Benincasa hispida])

HSP 1 Score: 172.2 bits (435), Expect = 2.4e-39
Identity = 86/103 (83.50%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60
           MASISSS  S SWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKT DEVKRHFD LV
Sbjct: 1   MASISSSHDSGSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTADEVKRHFDLLV 60

Query: 61  EDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 102
           EDVKHIESGRVPFP YTS+S+  T+ N N+ DQEQRMRN+KLH
Sbjct: 61  EDVKHIESGRVPFPNYTSTSTPATSDNGNLNDQEQRMRNLKLH 103

[Close]

BLAST of CSPI02G12200 vs. NCBI nr
Match: XP_023513343.1 (protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 85/102 (83.33%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60
           MAS+SSS  SSSWTP QNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LV
Sbjct: 1   MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           EDVKHIESG VPFP Y+S++S+  TSNAN+ DQEQRMRN+KL
Sbjct: 61  EDVKHIESGHVPFPNYSSTASASETSNANVSDQEQRMRNLKL 102

[Close]

BLAST of CSPI02G12200 vs. NCBI nr
Match: KAG6571117.1 (Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 86/102 (84.31%), Postives = 91/102 (89.22%), Query Frame = 0


Query: 1   MASISSS--SSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLV 60
           MAS+SSS  SSSWTP QNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVK HFD LV
Sbjct: 1   MASMSSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLV 60

Query: 61  EDVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           EDVKHIESG VPFP Y+S++S   TSNANI DQEQRMRN+KL
Sbjct: 61  EDVKHIESGHVPFPNYSSTASDSGTSNANINDQEQRMRNLKL 102

[Close]

BLAST of CSPI02G12200 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 3.2e-26
Identity = 60/99 (60.61%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 5   SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHI 64
           S  S SWT  QNKAFERALAV+D+DTPDRW NVA+AV GGKTP+E KR +D LV D++ I
Sbjct: 8   SYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYDLLVRDIESI 67

Query: 65  ESGRVPFPKYTSSSSSPTTSNAN---IKDQEQRMRNMKL 101
           E+G VPFP Y +     TT N+N   ++D+E+RMR+MKL
Sbjct: 68  ENGHVPFPDYKT-----TTGNSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of CSPI02G12200 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 111.7 bits (278), Expect = 3.5e-25
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 5   SSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVEDVKHI 64
           S SS SWT  QNKAFE+ALA +D+DTP+RW NVAK V GGKT +EVKRH++ LV+D+  I
Sbjct: 8   SQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYELLVQDINSI 67

Query: 65  ESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           E+G VPFP Y +S      +N  +  +E+RMRNM+L
Sbjct: 68  ENGHVPFPNYRTSGG---CTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of CSPI02G12200 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 104.8 bits (260), Expect = 4.3e-23
Identity = 60/101 (59.41%), Postives = 75/101 (74.26%), Query Frame = 0


Query: 1   MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVE 60
           MAS S SS S WT +QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVKRH+D LVE
Sbjct: 1   MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 61  DVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKL 101
           D+ +IE+GRVP P Y +  S+  + N       ++M+N+K+
Sbjct: 61  DLINIETGRVPLPNYKTFESNSRSIN---DFDTRKMKNLKI 97

[Close]

BLAST of CSPI02G12200 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 103.6 bits (257), Expect = 9.6e-23
Identity = 57/86 (66.28%), Postives = 67/86 (77.91%), Query Frame = 0


Query: 1  MASISSSS-SSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVE 60
          MAS S SS S WT +QNK FERALAV+DKDTPDRW NVAKAV GGKT +EVKRH+D LVE
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYDILVE 60

Query: 61 DVKHIESGRVPFPKYTSSSSSPTTSN 86
          D+ +IE+GRVP P Y +  S+  + N
Sbjct: 61 DLINIETGRVPLPNYKTFESNSRSIN 85

[Close]

BLAST of CSPI02G12200 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-22
Identity = 60/102 (58.82%), Postives = 73/102 (71.57%), Query Frame = 0


Query: 1   MASIS-SSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVE 60
           MAS S SSSSSWT  QNK FERALAV+DKDTPDRW NVAKAV G K+ +EVKRH+D LVE
Sbjct: 1   MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYDILVE 60

Query: 61  DVKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQR-MRNMKL 101
           D+ +IE   VP PKY +      + +  I D + R M+NM++
Sbjct: 61  DLMNIEQDLVPLPKYKTVDVG--SKSRGIDDFDLRLMKNMRI 99

The following BLAST results are available for this feature:

BLAST of CSPI02G12200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q58FS3	2.6e-25	57.00	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q9SIJ5	4.5e-25	60.61	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	5.0e-24	57.29	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q1A173	6.1e-22	59.41	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	6.7e-21	58.82	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of CSPI02G12200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL58	2.7e-49	100.00	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]
A0A1S3CDK8	1.0e-43	89.09	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1	[more]
A0A6J1FXX9	4.8e-38	82.35	protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1	[more]
A0A6J1JBS7	6.3e-38	82.35	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]
A0A6J1G543	5.5e-34	82.52	transcription factor RADIALIS-like OS=Cucurbita moschata OX=3662 GN=LOC111450995...	[more]

BLAST of CSPI02G12200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148844.1	5.6e-49	100.00	transcription factor RADIALIS [Cucumis sativus] >KGN61794.1 hypothetical protein...	[more]
XP_008460938.1	2.1e-43	89.09	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
XP_038902123.1	2.4e-39	83.50	protein RADIALIS-like 2 [Benincasa hispida]	[more]
XP_023513343.1	1.2e-38	83.33	protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]	[more]
KAG6571117.1	1.5e-38	84.31	Protein RADIALIS-like 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CSPI02G12200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	3.2e-26	60.61	Homeodomain-like superfamily protein	[more]
AT4G39250.1	3.5e-25	57.29	RAD-like 1	[more]
AT1G75250.2	4.3e-23	59.41	RAD-like 6	[more]
AT1G75250.1	9.6e-23	66.28	RAD-like 6	[more]
AT1G19510.1	4.8e-22	58.82	RAD-like 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 7..60 e-value: 1.4E-4 score: 31.2
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 3..58 score: 6.155979
None	No IPR available	GENE3D	1.10.10.60		coord: 1..71 e-value: 1.3E-22 score: 81.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..91
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..96
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..96
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 9..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G12200.1	CSPI02G12200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity