CSPI02G12070 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G12070
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMediator of RNA polymerase II transcription subunit 32
LocationChr2: 12362747 .. 12365974 (-)
RNA-Seq ExpressionCSPI02G12070
SyntenyCSPI02G12070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCACATTTTAAAACTTTGCGATAGATTTCAAAATGAAATTGCTACCTCTTCTAGTTAGTTTGAAGTCAATTTTTAAAAAATCTATCCCAAAAATATATTTCATTAGGTTGAAGAAATTAGGAATTTGGGAAATTTGATTTCCTCTCTTCTTCGCCATATTCCGATCTCAGTTCTCTCTCTCGACATCTCTCACTGTCTCGGCTCTCCTAGGCACAGCGCCGCTCCGCTGCTGCACCTCCGTCCAACATTCATCCAGCCTCCGTAGTCTTCTGCCGGTGAGCTCTCTTCCATCTCTATATTTCTTTCTGCATACCGTTTCCAACGCGCTGGTCATGAATTTCGAAAAAATGGATTAAAGACGGGCAAGAATGTATAGAATTTAAGGTTGGATGCTATGGAAATCGAAAGAATTTTGAAGCTATAAATTTGATTTTTCACCTTAGTTTTAGAAATGAAATTTTGTTCCAACCTTCTTCGTAAAGAGTAAATTGCTGACGCTTTTGATCTCCCCCGATTCTCCTCCTCACTTGGTAATCCATCTCTTTCAGTTTTCTGAGCCCTTCACTCTTCATTGCTCTCTCCACAGCACCCAACAGTTTACAGCAGAAGATTTGTGGTCTGCTACTCGTCCCACTTTCTGTTTCGGTATTGAAATCGTTGCTTATAAAGATTGAACCGAACCCAAAAGGGAGAAACCTGATACGCTTTTCAAGTTTGTTTTTCTTAATTTTGGTGGGTTGAATTCAGAGGATTCGATGGTTTTCACTGCCATCTTCTTCTTTTCTTCCTCCTCCGCTGGGAACTTTTCAATTTACGCCTCTCTTTTCTATTTTCGTAGATTATTGTCTTCCCTGTGCCTCACCATTATGAGTTTTTCTAAAAGAGAGAGACATATAGCTTGAACAAGTTTCCCCTCATTAACGGAAGGTTTTCTTCTCGCGGAGTGCCATCCCCATTTTATAGCTTATCTTTCACTTTTTGGGTTCAATGCTTTTAACTCGTGAACAAATTATTGATGATGTTAGATGTTTTATTAAATTTGCATTCACCGCTTAGCTTAAGCTTTTGGCTATCAAGTTGTTTCAGGATGTTATGGGTTCAGTACTTGCAATGTTTTTTCCTCTCCAATTAATATACATTCACACTTGCTTGGCGCTTGTTCATATTTCAAGCGCAAGTAAGGGGAGTGTTAGATATGATATTAAATTTTTCTTCACCCATTAGCTTGAGCTGGTGATTTAAGAGATGATCTGCATTGTTGAATGTATTTTCCATTTTTATTTCCTTGAATCGTTGCATATTTTGCTGCTAGAAATCATCTTAAAAGGCATTAGCCTATTGAGTTTTCACCCCTAGCTGGTTGGTAGCCCGGTGTATATATCTATTTCCCCGCCCCCTTTTCTAGAAGAGAAACAATGTCATTTCAATGGCATGAAGCGAGAGAATCCTGACACATCTGTAGATGAATTACATGAACGTTCTCCAATGAGAAATTAGCGAAGGTAGGGTATCTGCATTATGTGTACATAGTATGACAAAGAATTAGATTCATAAAGTTACCAAAAGAAGAGAGTATCCATGAAAATTCTATCAAGAGTCAATTTTAAAGTCCTCTTTGCAACCTGGAAAGGGTGACCCGTCAAACTTAAAGTGGGAAAATCAAAGATAGTGTTAGGCTAAGGTATGGAACAATTGAAAGAAGTTAAAATAATATCCCCTATCGACAAGTACAAAGACAGTGAGCAAATAGGTGGATCTCTTAAGCTGCAGAACACATAACACACCAAGATGGAGAAAGGTGCAAGGGAACTAATTGGGATTAGTTTGGTAATAGTAGGGGGCGGTCAGGTAATTAGTTAGGAAGTTGGTTAGGGTATTTGGTTATATATAGAGGTAGGGGGATTGAGGGAAGGAATCAAGTAGTTAGTGATTTACTTACAGCATCATATATTCATATAAATGAGCACACAAAACGTTTATGTTTTAGTTTTTGTTGTCAGGATTAGGAATACAAACATAGTCCCATCTTGGCTAGGGAAGGAAAAGATCCATGGTATATAATTGAGGATGCTTATCAGTTATCTCCATTGGACCATTGGTATGATCATTTTTAGGTTAAGTCAAGAGCAAACCATGATAGCTTATCTTCAGAAGAGTATCTTACCGGTTGCCATTGTCGAAATATGTTGAGGGTCCAAATCATTTTTAACATTTGTTTTTATTGAATAATTTAAACAAATATGGGTTCTTTTACACAGTTAGTAGGCTAAAGTGGCATATGAAAGTTTAGGAACCAAAATGCAATTGATATCTAAGTTCAAGTTCTTGCTTGTATTCTCGTGCATATTAGCATTTCCCAAGAGACTAGACTCTAGATACTTACTTCCTTGGTTACCGTATATTTAGGTATCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACCTATTATCTTTTGAGGTTATAACGTAACAAGTTCTTGTTTTCTGTTTTGCATGAAATGGCTTTTTTGGTTGGCGGTGGAGCGTTTACTGTGTAAGATAATCGGCTTGAGCTTTAACTATACATGAAAAAGCGGATCCATTTGTTCTGTATCTATTGTTAACTAATATAGTTTCATGTTCTTTGTACTTGTTTGTTTTTCTTGGAGGTTTGGTGGGGAGAAATTGTCTCTAGTATATATACTAATGTGGGGATTCAAAACTAAGGTGTCTCCAGTTTGTGGATTTGATTTCATTTGTGTTATTAAAATGCATAGAAAAATATTTCCATTTAACATTTAGTTTAGGGGTAATTTGAGACGAGTGTTATGC

mRNA sequence

GCACATTTTAAAACTTTGCGATAGATTTCAAAATGAAATTGCTACCTCTTCTAGTTAGTTTGAAGTCAATTTTTAAAAAATCTATCCCAAAAATATATTTCATTAGGTTGAAGAAATTAGGAATTTGGGAAATTTGATTTCCTCTCTTCTTCGCCATATTCCGATCTCAGTTCTCTCTCTCGACATCTCTCACTGTCTCGGCTCTCCTAGGCACAGCGCCGCTCCGCTGCTGCACCTCCGTCCAACATTCATCCAGCCTCCGTAGTCTTCTGCCGGTATCTGATATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACCTATTATCTTTTGAGGTTATAACGTAACAAGTTCTTGTTTTCTGTTTTGCATGAAATGGCTTTTTTGGTTGGCGGTGGAGCGTTTACTGTGTAAGATAATCGGCTTGAGCTTTAACTATACATGAAAAAGCGGATCCATTTGTTCTGTATCTATTGTTAACTAATATAGTTTCATGTTCTTTGTACTTGTTTGTTTTTCTTGGAGGTTTGGTGGGGAGAAATTGTCTCTAGTATATATACTAATGTGGGGATTCAAAACTAAGGTGTCTCCAGTTTGTGGATTTGATTTCATTTGTGTTATTAAAATGCATAGAAAAATATTTCCATTTAACATTTAGTTTAGGGGTAATTTGAGACGAGTGTTATGC

Coding sequence (CDS)

ATGGACAGCCTAGTGGACTCTTTAAATAACGCATATCAGGAGTTTGTTGCTGGAGCAGCTAATGTTCTTGAAGCAAATGAAGCCTCTGGGGCTCAGAAGACAGCAGCAACAGATGCCGCTCTTGAGAATTTTAAACAAAAATGGGAGCTATTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTGAAGCAAAGGATAGGATCAGAGTGCCTTGTTGACGAGGCCACTGGTTCACTGGCTGGCAAGTCTGGGCAGTCTGCCACCACTGGCCTTCCTCCGATCAGTGCTGTTCGATTGGAACAGATGAGCAAAGCGGTAAGATGGCTCGTGATTGAGTTGCAGCACGGCTCAGGAGCTGCTGCTTCTGCTTCAGCACACTCTCATCAGTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAG

Protein sequence

MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGSGAAASASAHSHQSAPFDARFTEDATQ*
Homology
[Close]
BLAST of CSPI02G12070 vs. ExPASy Swiss-Prot
Match: Q84VW5 (Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana OX=3702 GN=MED32 PE=1 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.7e-46
Identity = 104/153 (67.97%), Postives = 120/153 (78.43%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQSATTG----LPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG   + AG    +A TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGSGAAASASAHSHQSAPFDARFTEDATQ 147
           +ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

[Close]
BLAST of CSPI02G12070 vs. ExPASy TrEMBL
Match: A0A5A7TWZ7 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004640 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.4e-70
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQS TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 124

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTEDATQ
Sbjct: 125 GAAASASAHSHQSAPFDARFTEDATQ 150

[Close]
BLAST of CSPI02G12070 vs. ExPASy TrEMBL
Match: A0A0A0LIN7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.4e-70
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQSATT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]
BLAST of CSPI02G12070 vs. ExPASy TrEMBL
Match: A0A5D3CQ46 (Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G001830 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.0e-70
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQS TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 124

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTED TQ
Sbjct: 125 GAAASASAHSHQSAPFDARFTEDTTQ 150

[Close]
BLAST of CSPI02G12070 vs. ExPASy TrEMBL
Match: A0A1S3C6T6 (mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 GN=LOC103497499 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 4.0e-70
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQS TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTED TQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDTTQ 146

[Close]
BLAST of CSPI02G12070 vs. ExPASy TrEMBL
Match: A0A6J1JH28 (mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484308 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 142/149 (95.30%), Postives = 145/149 (97.32%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFV+GAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVSGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSA--TTGLPPISAVRLEQMSKAVRWLVIELQH 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+A  TTGLPPISA+RLEQMSKAVRWLVIELQH
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAAATTTGLPPISAIRLEQMSKAVRWLVIELQH 120

Query: 121 GSG-AAASASAHSHQSAPFDARFTEDATQ 147
           GSG AAASASAHSH SAPFDARFTEDATQ
Sbjct: 121 GSGAAAASASAHSHPSAPFDARFTEDATQ 149

[Close]
BLAST of CSPI02G12070 vs. NCBI nr
Match: KAA0045925.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 275.4 bits (703), Expect = 2.8e-70
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQS TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 124

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTEDATQ
Sbjct: 125 GAAASASAHSHQSAPFDARFTEDATQ 150

[Close]
BLAST of CSPI02G12070 vs. NCBI nr
Match: XP_038902813.1 (mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_038902814.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida])

HSP 1 Score: 275.0 bits (702), Expect = 3.7e-70
Identity = 144/146 (98.63%), Postives = 146/146 (100.00%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQ+ATTG+PPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQAATTGIPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]
BLAST of CSPI02G12070 vs. NCBI nr
Match: XP_004148855.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031736355.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >KGN61780.1 hypothetical protein Csa_006151 [Cucumis sativus])

HSP 1 Score: 274.6 bits (701), Expect = 4.9e-70
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQSATT LPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTSLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTEDATQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDATQ 146

[Close]
BLAST of CSPI02G12070 vs. NCBI nr
Match: XP_008457936.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 8.3e-70
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQS TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 120

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTED TQ
Sbjct: 121 GAAASASAHSHQSAPFDARFTEDTTQ 146

[Close]
BLAST of CSPI02G12070 vs. NCBI nr
Match: TYK13665.1 (mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa])

HSP 1 Score: 273.9 bits (699), Expect = 8.3e-70
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE
Sbjct: 5   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 64

Query: 61  FVESVKQRIGSECLVDEATGSLAGKSGQSATTGLPPISAVRLEQMSKAVRWLVIELQHGS 120
           FVESVKQRIGSECLVDEATGSLAGKSGQS TTGLPPISAVRLEQMSKAVRWLVIELQHGS
Sbjct: 65  FVESVKQRIGSECLVDEATGSLAGKSGQSGTTGLPPISAVRLEQMSKAVRWLVIELQHGS 124

Query: 121 GAAASASAHSHQSAPFDARFTEDATQ 147
           GAAASASAHSHQSAPFDARFTED TQ
Sbjct: 125 GAAASASAHSHQSAPFDARFTEDTTQ 150

[Close]
BLAST of CSPI02G12070 vs. TAIR 10
Match: AT1G11760.1 (MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 184.5 bits (467), Expect = 6.2e-47
Identity = 104/153 (67.97%), Postives = 120/153 (78.43%), Query Frame = 0 

Query: 1   MDSLVDSLNNAYQEFVAGAANVLEANEASGAQKTAATDAALENFKQKWELFRVACDQAEE 60
           MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEE
Sbjct: 1   MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61  FVESVKQRIGSECLVDEATG---SLAGKSGQSATTG----LPPISAVRLEQMSKAVRWLV 120
           FVESVKQRIGSECLVDEATG   + AG    +A TG    LPPISAVRLEQMS+AVRWLV
Sbjct: 61  FVESVKQRIGSECLVDEATGLTTTAAGGQAPAAVTGAATSLPPISAVRLEQMSRAVRWLV 120

Query: 121 IELQHGSGAAASASAHSHQSAPFDARFTEDATQ 147
           +ELQ GSG  A  S HS  S  FD+RF+ED+TQ
Sbjct: 121 LELQRGSG-VAPGSVHS-SSTGFDSRFSEDSTQ 151

The following BLAST results are available for this feature:
BLAST of CSPI02G12070 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q84VW58.7e-4667.97Mediator of RNA polymerase II transcription subunit 32 OS=Arabidopsis thaliana O... [more]
BLAST of CSPI02G12070 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TWZ71.4e-7099.32Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku... [more]
A0A0A0LIN72.4e-7099.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245440 PE=4 SV=1[more]
A0A5D3CQ464.0e-7098.63Mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo var. maku... [more]
A0A1S3C6T64.0e-7098.63mediator of RNA polymerase II transcription subunit 32 OS=Cucumis melo OX=3656 G... [more]
A0A6J1JH281.2e-6695.30mediator of RNA polymerase II transcription subunit 32-like isoform X2 OS=Cucurb... [more]
BLAST of CSPI02G12070 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0045925.12.8e-7099.32mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa... [more]
XP_038902813.13.7e-7098.63mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida] >XP_0... [more]
XP_004148855.14.9e-7099.32mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus] >XP_031... [more]
XP_008457936.18.3e-7098.63PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo][more]
TYK13665.18.3e-7098.63mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa... [more]
BLAST of CSPI02G12070 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G11760.16.2e-4767.97MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0;... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..146
NoneNo IPR availablePANTHERPTHR35989:SF1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32coord: 1..146
IPR033244Mediator of RNA polymerase II transcription subunit 32PANTHERPTHR35989MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G12070.1CSPI02G12070.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009631 cold acclimation
biological_process GO:0010150 leaf senescence
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048364 root development
cellular_component GO:0016592 mediator complex