CSPI02G11940 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G11940
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic
LocationChr2: 12237949 .. 12239169 (-)
RNA-Seq ExpressionCSPI02G11940
SyntenyCSPI02G11940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAAAGAGAAAAAAAAGTAGTGGTTCATCATAGAGCTAAGGAAAGAAGTGTGGATAATGTGGAGAGATCAGTTGTGAGAGATAATAGATCAGAAAAGAAAAGTATTAGCAAAGACCCAAAGGCACACACAAAAGCTGATTAATTGAAAATGGCTGCTACCTCTACCTCCATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGTTAATATCATCTTATAACTCGATTCTCTCTCTTTTAGCTCTCCCTTCTTGATTTCCAGTCGTTGTTCAGTGTGTGACTTGACATATATGCATATTCTATGTTGTGCTGCAAGTAATTAACTACAGCTGTTATATTCCTTGATAAGAAAAGGAAAAGAAAGTGAATGGTGGATAAAATAGAATGTCGATCCCTAGGAACTTACATAAGCAATTCGGTTGATGGGGTTTAGTATGACAAAGATGGATGAGATTGTGAACTCTCTTTAGAGTTGGTGAGCTTCAAGAGTACTTAAAACTATCATTCTTATGTTTTATTAAACCCTCCTATTACACACTGCAAATATCCTATCACTTCAAACTCCATATTTCTCACAACTACGAAAGGCTTCCCAATTTCATTTTCTGGTCCTCAAACACTCCATAAGATGATCATCCACAAGCTTCTTATATTGTCAAACTACCCCCTAATTGTTTCAGAAACCTAAAAGGAGATTTTATGACACATATGATTGATTTTAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAGTAAGTAATTAATCTCACATTCCTAATATACATATCTTTTACTTAATTTGAACTTAAATAACTGAAGGTAGGGCTAATTTGATATTCATAAATTGTTTGATTTAGATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAAATGCATACAACACAACAGCTCCTAAATAAACCCTTTATATATCTATACATATACTTTCAATTTGATTTTTCTATTTTTCCTATTGTAATAATGTGTTAATATATATATATATATCTCATTAGCTTTC

mRNA sequence

GTAAAAGAGAAAAAAAAGTAGTGGTTCATCATAGAGCTAAGGAAAGAAGTGTGGATAATGTGGAGAGATCAGTTGTGAGAGATAATAGATCAGAAAAGAAAAGTATTAGCAAAGACCCAAAGGCACACACAAAAGCTGATTAATTGAAAATGGCTGCTACCTCTACCTCCATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAAATGCATACAACACAACAGCTCCTAAATAAACCCTTTATATATCTATACATATACTTTCAATTTGATTTTTCTATTTTTCCTATTGTAATAATGTGTTAATATATATATATATATCTCATTAGCTTTC

Coding sequence (CDS)

ATGGCTGCTACCTCTACCTCCATCAACATCTTCCCATTTCCCTCCTATCAAATTTTTAGAAGTAAAAGAAAATCATCACCCAATGACATTATTGTTCCTTTTGCTGCACTGCCAACATCTAATTTGCTGCCCAAAAGATGCCAGAAGTGTGGAGGTAAAGGGGCCATTGATTGTCCTGGATGTAAGGGAACGGGAAAGAACAAGAAAAACGGAAACATCTTCGAGCGTTGGAAATGTTTTGAGTGTCAAGGATTTGGATTGAAGAGTTGTCCTCAATGTGGAAAAGGAGGCCTCACTCCAGAGCAAAGGGGAGAAAGATAA

Protein sequence

MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER*
Homology
BLAST of CSPI02G11940 vs. ExPASy TrEMBL
Match: A0A0A0LIM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 9.7e-58
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60
           MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG
Sbjct: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60

Query: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

BLAST of CSPI02G11940 vs. ExPASy TrEMBL
Match: A0A1S3C9W1 (protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498437 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 4.7e-52
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 3   ATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 62
           +TSTSINIFPFPSYQI RSK KSSPN I VPFAALPTSNLLPKRCQKCGGKGAIDCPGCK
Sbjct: 5   STSTSINIFPFPSYQIVRSKTKSSPN-ITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 64

Query: 63  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

BLAST of CSPI02G11940 vs. ExPASy TrEMBL
Match: A0A6J1HLG5 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464051 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.0e-35
Identity = 75/109 (68.81%), Postives = 89/109 (81.65%), Query Frame = 0

Query: 1   MAATSTSINIFPFPSYQ---IFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAID 60
           ++ ++ S + FPFP +    + ++K +S P++I  PFAA P  + LPKRCQ CGGKGAID
Sbjct: 8   VSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAID 67

Query: 61  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 68  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of CSPI02G11940 vs. ExPASy TrEMBL
Match: A0A6J1JSI3 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487154 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 11  FPFPSYQ---IFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKN 70
           FPFP +    + ++K +S P++I  PFAA P  + LPKRCQ CGGKGAIDC GCKGTG+N
Sbjct: 18  FPFPPHGFAILPQNKSRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAIDCTGCKGTGRN 77

Query: 71  KKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           KKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 78  KKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of CSPI02G11940 vs. ExPASy TrEMBL
Match: A0A6J1DHW0 (uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020203 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.2e-33
Identity = 74/112 (66.07%), Postives = 83/112 (74.11%), Query Frame = 0

Query: 2   AATSTSIN-IFPF------PSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKG 61
           + +S +IN IFPF      P +++  S          + F A  T + LPKRCQKCGGKG
Sbjct: 10  SCSSHTINTIFPFPFPPPPPPHRLLISPPNKFKRRSNISFGAAATFS-LPKRCQKCGGKG 69

Query: 62  AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCP+CG GGLTPEQRGER
Sbjct: 70  AIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPECGNGGLTPEQRGER 120

BLAST of CSPI02G11940 vs. NCBI nr
Match: XP_004153120.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hypothetical protein Csa_005912 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 2.0e-57
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0

Query: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60
           MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG
Sbjct: 1   MAATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPG 60

Query: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 61  CKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 106

BLAST of CSPI02G11940 vs. NCBI nr
Match: XP_008459263.1 (PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo])

HSP 1 Score: 213.4 bits (542), Expect = 9.7e-52
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 3   ATSTSINIFPFPSYQIFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 62
           +TSTSINIFPFPSYQI RSK KSSPN I VPFAALPTSNLLPKRCQKCGGKGAIDCPGCK
Sbjct: 5   STSTSINIFPFPSYQIVRSKTKSSPN-ITVPFAALPTSNLLPKRCQKCGGKGAIDCPGCK 64

Query: 63  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER
Sbjct: 65  GTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107

BLAST of CSPI02G11940 vs. NCBI nr
Match: XP_038901776.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 164.9 bits (416), Expect = 3.9e-37
Identity = 79/110 (71.82%), Postives = 87/110 (79.09%), Query Frame = 0

Query: 3   ATSTSINIFPFPSYQIFR------SKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAI 62
           A ++S NIFPF  Y++ R      SK KSS   +    AA    +LLPKRCQKCGGKGAI
Sbjct: 10  AMASSNNIFPFSPYRLVRSSPPYTSKTKSSNISLA---AAAAARSLLPKRCQKCGGKGAI 69

Query: 63  DCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           DCPGCKGTGKNKKNGNIFERWKCF+CQGFGLKSCP+CGKGGLTPEQRGER
Sbjct: 70  DCPGCKGTGKNKKNGNIFERWKCFDCQGFGLKSCPECGKGGLTPEQRGER 116

BLAST of CSPI02G11940 vs. NCBI nr
Match: XP_022963874.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata])

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-35
Identity = 75/109 (68.81%), Postives = 89/109 (81.65%), Query Frame = 0

Query: 1   MAATSTSINIFPFPSYQ---IFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAID 60
           ++ ++ S + FPFP +    + ++K +S P++I  PFAA P  + LPKRCQ CGGKGAID
Sbjct: 8   VSKSNNSTSPFPFPPHGFAILPQNKCRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAID 67

Query: 61  CPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           CPGCKGTG+NKKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 68  CPGCKGTGRNKKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of CSPI02G11940 vs. NCBI nr
Match: XP_023521952.1 (protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023553311.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023553319.1 protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 158.3 bits (399), Expect = 3.7e-35
Identity = 74/99 (74.75%), Postives = 83/99 (83.84%), Query Frame = 0

Query: 11  FPFPSYQ---IFRSKRKSSPNDIIVPFAALPTSNLLPKRCQKCGGKGAIDCPGCKGTGKN 70
           FPFP +    + ++K +S P++I  PFAA P  + LPKRCQ CGGKGAIDCPGCKGTG+N
Sbjct: 18  FPFPPHGFAILPQNKSRSKPSNI--PFAAAPKFS-LPKRCQTCGGKGAIDCPGCKGTGRN 77

Query: 71  KKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRGER 107
           KKNGNIFERWKCFECQGFGLKSCP CGKGGLTPEQRGER
Sbjct: 78  KKNGNIFERWKCFECQGFGLKSCPDCGKGGLTPEQRGER 113

BLAST of CSPI02G11940 vs. TAIR 10
Match: AT1G22630.1 (unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 87 Blast hits to 86 proteins in 34 species: Archae - 0; Bacteria - 13; Metazoa - 27; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). )

HSP 1 Score: 132.1 bits (331), Expect = 2.6e-31
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 45  KRCQKCGGKGAIDCPGCKGTGKNKKNGNIFERWKCFECQGFGLKSCPQCGKGGLTPEQRG 104
           K C+ CG KGAI+CPGCKGTGKNKKNGN+FERWKCF+CQGFG+KSCP+CGKGGLTPEQRG
Sbjct: 49  KSCETCGAKGAIECPGCKGTGKNKKNGNMFERWKCFDCQGFGMKSCPKCGKGGLTPEQRG 108

Query: 105 ER 107
           ER
Sbjct: 109 ER 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LIM59.7e-58100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G238860 PE=4 SV=1[more]
A0A1S3C9W14.7e-5295.19protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic OS=Cucumis melo OX=3656 G... [more]
A0A6J1HLG51.0e-3568.81protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JSI31.5e-3473.74protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1DHW02.2e-3366.07uncharacterized protein LOC111020203 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
Match NameE-valueIdentityDescription
XP_004153120.12.0e-57100.00protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucumis sativus] >KGN61770.1 hy... [more]
XP_008459263.19.7e-5295.19PREDICTED: protein EMBRYO SAC DEVELOPMENT ARREST 3, chloroplastic [Cucumis melo][more]
XP_038901776.13.9e-3771.82protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic isoform X1 [Benincasa hispida][more]
XP_022963874.12.2e-3568.81protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic [Cucurbita moschata][more]
XP_023521952.13.7e-3574.75protein PHOTOSYSTEM I ASSEMBLY 2, chloroplastic-like [Cucurbita pepo subsp. pepo... [more]
Match NameE-valueIdentityDescription
AT1G22630.12.6e-3185.48unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXP... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR15852PLASTID TRANSCRIPTIONALLY ACTIVE PROTEINcoord: 30..78
NoneNo IPR availablePANTHERPTHR15852:SF55PROTEIN EMBRYO SAC DEVELOPMENT ARREST 3, CHLOROPLASTIC ISOFORM X1coord: 30..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G11940.1CSPI02G11940.1mRNA
CSPI02G11940.2CSPI02G11940.2mRNA