CSPI02G11810 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G11810
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 12153104 .. 12154073 (+)
RNA-Seq ExpressionCSPI02G11810
SyntenyCSPI02G11810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGAAAAAAAAAATCTATGTCCATTGTGTAGAATATTCGTAAACCAAATTCCATGTGCCAACTCACCCTCAAATTCCATCCACCTTCCCTATATAAATCTTCTCCGCACCCTTTCTCAAAATTCCATTTTACACAAAGAAAAAAGAATAACAAAGTAAAAATGTCGGCAATGGTAGAGTCATGGATGAACGAACTGGGAAAATGGAGAAACAGAGTTGAAGCTCAAGACAACAACAACAAGAAGCCATTGATGCCCAAATCCAAGCAACTCCAAACAGATCACTTCAAACAACCCGCCAAAACCCATATGGCGGATTCCGACGACACAGAAACCTCCGTCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGCTTTGCTCCTTTATGATTATGCTTTCTTTCAATAATTCCTCTTCCTCTCTTTTAAGTTTTACTCTGTATATTGCTGAATATATATCTAATATAATTGTAAAGGAAATAGTAATCTAGTTTTGTCCACTGCCACCTTGTACGCCTGCCGGCCCATACTGCTTGTGATGCTCTGTTTCTACAATTCCTCTTTCCTATGTTTTCCTTTGTAATTCTATGTTGAATATATCTTAGGGTATGATCTGTATTTTTCTCACCGCCGTTGCCAGATTGGAGAGATGAGGAGTCCGGTGGGTGGTAGCGGCGGTGGTGGTGGTGGCCGGTTTGGAGACTTTATGGCTTTCTCCTTTTCAATTATGCCTTGCAGAATTTCTGTATATATTTCTTTAATCATTTTTTTCTAATTAATAAGATTTTGCTCTTCCTTCTTGTTGTTTGAAGTATTAATATAATAAAATTTACCATAAATGAAGTTATCAAATTTAATTTTTAAATTATGGCATATTAGTGTAAATCCATTTTTATAGTTGTAATTAATGAGTGTAATTTGAATGTAGAATAAGAAAAAGAAGAGCAAGATCCATTTTGTCAAGT

mRNA sequence

AAAAAAGAAAAAAAAAATCTATGTCCATTGTGTAGAATATTCGTAAACCAAATTCCATGTGCCAACTCACCCTCAAATTCCATCCACCTTCCCTATATAAATCTTCTCCGCACCCTTTCTCAAAATTCCATTTTACACAAAGAAAAAAGAATAACAAAGTAAAAATGTCGGCAATGGTAGAGTCATGGATGAACGAACTGGGAAAATGGAGAAACAGAGTTGAAGCTCAAGACAACAACAACAAGAAGCCATTGATGCCCAAATCCAAGCAACTCCAAACAGATCACTTCAAACAACCCGCCAAAACCCATATGGCGGATTCCGACGACACAGAAACCTCCGTCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGCTTTGCTCCTTTATGATTATGCTTTCTTTCAATAATTCCTCTTCCTCTCTTTTAAGTTTTACTCTGTATATTGCTGAATATATATCTAATATAATTGTAAAGGAAATAGTAATCTAGTTTTGTCCACTGCCACCTTGTACGCCTGCCGGCCCATACTGCTTGTGATGCTCTGTTTCTACAATTCCTCTTTCCTATGTTTTCCTTTGTAATTCTATGTTGAATATATCTTAGGGTATGATCTGTATTTTTCTCACCGCCGTTGCCAGATTGGAGAGATGAGGAGTCCGGTGGGTGGTAGCGGCGGTGGTGGTGGTGGCCGGTTTGGAGACTTTATGGCTTTCTCCTTTTCAATTATGCCTTGCAGAATTTCTGTATATATTTCTTTAATCATTTTTTTCTAATTAATAAGATTTTGCTCTTCCTTCTTGTTGTTTGAAGTATTAATATAATAAAATTTACCATAAATGAAGTTATCAAATTTAATTTTTAAATTATGGCATATTAGTGTAAATCCATTTTTATAGTTGTAATTAATGAGTGTAATTTGAATGTAGAATAAGAAAAAGAAGAGCAAGATCCATTTTGTCAAGT

Coding sequence (CDS)

ATGTGCCAACTCACCCTCAAATTCCATCCACCTTCCCTATATAAATCTTCTCCGCACCCTTTCTCAAAATTCCATTTTACACAAAGAAAAAAGAATAACAAAGTAAAAATGTCGGCAATGGTAGAGTCATGGATGAACGAACTGGGAAAATGGAGAAACAGAGTTGAAGCTCAAGACAACAACAACAAGAAGCCATTGATGCCCAAATCCAAGCAACTCCAAACAGATCACTTCAAACAACCCGCCAAAACCCATATGGCGGATTCCGACGACACAGAAACCTCCGTCCTCTCTGAATCCACCATTTGTTTGCTCATAGATCGCTTTGCTCCTTTATGA

Protein sequence

MCQLTLKFHPPSLYKSSPHPFSKFHFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSVLSESTICLLIDRFAPL*
Homology
BLAST of CSPI02G11810 vs. ExPASy TrEMBL
Match: A0A0A0LP24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.7e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MCQLTLKFHPPSLYKSSPHPFSKFHFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQDN 60
           MCQLTLKFHPPSLYKSSPHPFSKFHFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQDN
Sbjct: 1   MCQLTLKFHPPSLYKSSPHPFSKFHFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQDN 60

Query: 61  NNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSVLSESTICLLIDRFAPL 113
           NNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSVLSESTICLLIDRFAPL
Sbjct: 61  NNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSVLSESTICLLIDRFAPL 112

BLAST of CSPI02G11810 vs. ExPASy TrEMBL
Match: A0A5N6QPM2 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004952 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQ-LQTDHFKQPAK-THMADSDDTET 96
           MSA+VE+WM +L K   +V+A     +KPL  K+K+  + +  K+  K + +   D+  T
Sbjct: 1   MSAVVETWMGQLAKLGEKVKA-----RKPLFSKAKKGGEVEEAKEGVKESRVVQRDNNNT 60

Query: 97  SVLSESTICLLIDRFAP 112
           ++LSE+T+CLL+DRFAP
Sbjct: 61  AMLSEATVCLLMDRFAP 72

BLAST of CSPI02G11810 vs. NCBI nr
Match: KGN61756.1 (hypothetical protein Csa_006080 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MCQLTLKFHPPSLYKSSPHPFSKFHFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQDN 60
           MCQLTLKFHPPSLYKSSPHPFSKFHFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQDN
Sbjct: 1   MCQLTLKFHPPSLYKSSPHPFSKFHFTQRKKNNKVKMSAMVESWMNELGKWRNRVEAQDN 60

Query: 61  NNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSVLSESTICLLIDRFAPL 113
           NNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSVLSESTICLLIDRFAPL
Sbjct: 61  NNKKPLMPKSKQLQTDHFKQPAKTHMADSDDTETSVLSESTICLLIDRFAPL 112

BLAST of CSPI02G11810 vs. NCBI nr
Match: KAG6571144.1 (hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 7.2e-13
Identity = 51/76 (67.11%), Postives = 54/76 (71.05%), Query Frame = 0

Query: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQ-LQTDHFKQPAKTHMADSDDTETS 96
           MSAMVESWM+ELGKW+NRVEAQ    KKPLMPKS Q LQ D          A SDDTET 
Sbjct: 1   MSAMVESWMSELGKWKNRVEAQ--KKKKPLMPKSNQFLQND-------VVSAHSDDTETE 60

Query: 97  VLSESTICLLIDRFAP 112
              E+TICLLIDRFAP
Sbjct: 61  RERETTICLLIDRFAP 67

BLAST of CSPI02G11810 vs. NCBI nr
Match: KAG6605111.1 (hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-07
Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQLQTDHFKQPAKTHM--ADSDDTET 96
           M+AMVESWM+ELGKW+NRVEAQ    KKPLMPKSK       K+     +  ADSDD E 
Sbjct: 1   MAAMVESWMSELGKWKNRVEAQ---KKKPLMPKSKLCHQRDLKESENNLVISADSDDRE- 60

Query: 97  SVLSESTICLLID 108
           + LS+STI  + D
Sbjct: 61  ATLSDSTILCVND 69

BLAST of CSPI02G11810 vs. NCBI nr
Match: KAE8008438.1 (hypothetical protein FH972_004952 [Carpinus fangiana])

HSP 1 Score: 54.7 bits (130), Expect = 6.1e-04
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = 0

Query: 37  MSAMVESWMNELGKWRNRVEAQDNNNKKPLMPKSKQ-LQTDHFKQPAK-THMADSDDTET 96
           MSA+VE+WM +L K   +V+A     +KPL  K+K+  + +  K+  K + +   D+  T
Sbjct: 1   MSAVVETWMGQLAKLGEKVKA-----RKPLFSKAKKGGEVEEAKEGVKESRVVQRDNNNT 60

Query: 97  SVLSESTICLLIDRFAP 112
           ++LSE+T+CLL+DRFAP
Sbjct: 61  AMLSEATVCLLMDRFAP 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LP248.7e-57100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G237740 PE=4 SV=1[more]
A0A5N6QPM22.9e-0441.56Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004952 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN61756.11.8e-56100.00hypothetical protein Csa_006080 [Cucumis sativus][more]
KAG6571144.17.2e-1367.11hypothetical protein SDJN03_30059, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6605111.17.7e-0756.16hypothetical protein SDJN03_02428, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8008438.16.1e-0441.56hypothetical protein FH972_004952 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..97
NoneNo IPR availablePANTHERPTHR36346EXPRESSED PROTEINcoord: 37..112
NoneNo IPR availablePANTHERPTHR36346:SF2EXPRESSED PROTEINcoord: 37..112

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G11810.1CSPI02G11810.1mRNA