CSPI02G11440 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G11440
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Gag protease polyprotein
Location	Chr2: 11700048 .. 11700399 (+)
RNA-Seq Expression	CSPI02G11440
Synteny	CSPI02G11440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGCTCGATCACTCCTATAGGGAGGTAGATCTTACGATAAATGTTCAATCATTCCCTAGTAGAAGTTGGATCGCTGACGATGAAGCAGAATCGAGATGCCCAATCGTTCCTACTAGAGAGGTGGATCTAACGACAAAAGCCCGATCATCTCCTAGTAGAAGTTGGATCGTTGATGGAAAAGCAGAGCCCACATGTCCAATTGTTCCTACTATGGAGGTGGATCTAACGACAAAAGTCGATCATTCTCTAATAAAAGTTGGATCATTGACGACAATGAAGAACCGAGATGCTCGATCATTCCTACTAGGGAGGTGGATCTTACAACAAATGTCTGATCGTCCCCTAG

mRNA sequence

ATGAAGATGCTCGATCACTCCTATAGGGAGGTAGATCTTACGATAAATGTTCAATCATTCCCTAGTAGAAGTTGGATCGCTGACGATGAAGCAGAATCGAGATGCCCAATCGTTCCTACTAGAGAGGTGGATCTAACGACAAAAGCCCGATCATCTCCTAGTAGAAGTTGGATCGTTGATGGAAAAGCAGAGCCCACATGTCCAATTGTTCCTACTATGGAGGGAGGTGGATCTTACAACAAATGTCTGATCGTCCCCTAG

Coding sequence (CDS)

ATGAAGATGCTCGATCACTCCTATAGGGAGGTAGATCTTACGATAAATGTTCAATCATTCCCTAGTAGAAGTTGGATCGCTGACGATGAAGCAGAATCGAGATGCCCAATCGTTCCTACTAGAGAGGTGGATCTAACGACAAAAGCCCGATCATCTCCTAGTAGAAGTTGGATCGTTGATGGAAAAGCAGAGCCCACATGTCCAATTGTTCCTACTATGGAGGGAGGTGGATCTTACAACAAATGTCTGATCGTCCCCTAG

Protein sequence

MKMLDHSYREVDLTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGKAEPTCPIVPTMEGGGSYNKCLIVP*

Homology

[Close]

BLAST of CSPI02G11440 vs. ExPASy TrEMBL
Match: A0A5A7TJ00 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold588G00500 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 3  MLDHSYREVDLTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGK 62
          M D SYREVDLT   +S PSRSWIADD AE RC I+PT+ VDL    RSSPSRSWI DG+
Sbjct: 1  MFDRSYREVDLTKKARSSPSRSWIADDAAEQRCLIIPTKAVDLMANVRSSPSRSWIADGR 60

[Close]

BLAST of CSPI02G11440 vs. ExPASy TrEMBL
Match: A0A5D3CQ76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G00160 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.6e-13
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 9  REVDLTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGKAEPTCP 68
          R VDLT+NV S  SRSWI  +EA+ +CPIVPTR VDLT  AR SPS+SWI   +AE  CP
Sbjct: 6  RAVDLTVNVGSSSSRSWITTNEAKRKCPIVPTRAVDLTANARPSPSKSWIAHDEAERRCP 65

Query: 69 IVPT 73
          IV T
Sbjct: 66 IVRT 69

[Close]

BLAST of CSPI02G11440 vs. ExPASy TrEMBL
Match: A0A5D3BQC5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001570 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.8e-13
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 13  LTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGKAEPTCPIVPT 72
           L  NV+S  SRSWI D+E + RCPIVPTREVDLT  ARSSPSRS I D K E  C IVPT
Sbjct: 112 LMANVESSHSRSWITDEETKRRCPIVPTREVDLTANARSSPSRSCIADDKTERRCLIVPT 171

[Close]

BLAST of CSPI02G11440 vs. ExPASy TrEMBL
Match: A0A5A7UAE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001580 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-11
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 3  MLDHSYREVDLTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGK 62
          M+D SYR+VD T NVQ   SRSWIA D+ E RC I+PTREVD+    R SPSRSWI +  
Sbjct: 1  MIDRSYRDVDRTANVQLSASRSWIAGDKVERRCLIIPTREVDVMANTRLSPSRSWIANDG 60

Query: 63 AEP 66
            P
Sbjct: 61 VTP 63

[Close]

BLAST of CSPI02G11440 vs. ExPASy TrEMBL
Match: A0A5A7V4Z7 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003480 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 46/93 (49.46%), Postives = 49/93 (52.69%), Query Frame = 0


Query: 5   DHSYREVDLTINVQSFPSRSWIAD-------DEAESRCPIVPTREVDLTTKARSSPSRSW 64
           D SY+ VDLT   +S P RSWIAD       D A S  P      VDLTTKARSSP RSW
Sbjct: 442 DRSYQRVDLTTKSRSSPDRSWIADGSITSPNDGARSLLP-----GVDLTTKARSSPDRSW 501

Query: 65  IVDGKAEPTCP----IVPTMEGGGSYNKCLIVP 87
           I DG    T P        + GGG  NK  IVP
Sbjct: 502 IADGSI--TSPNDDGARSLLPGGGFDNKSPIVP 527

[Close]

BLAST of CSPI02G11440 vs. NCBI nr
Match: KAE8651847.1 (hypothetical protein Csa_005992 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 9.7e-26
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0


Query: 1  MKMLDHSYREVDLTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVD 60
          MKMLD SYREVDLTINV+SFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVD
Sbjct: 1  MKMLDRSYREVDLTINVRSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVD 60

Query: 61 GKA 64
          GKA
Sbjct: 61 GKA 63

[Close]

BLAST of CSPI02G11440 vs. NCBI nr
Match: KAA0043383.1 (hypothetical protein E6C27_scaffold588G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.8e-14
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 3  MLDHSYREVDLTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGK 62
          M D SYREVDLT   +S PSRSWIADD AE RC I+PT+ VDL    RSSPSRSWI DG+
Sbjct: 1  MFDRSYREVDLTKKARSSPSRSWIADDAAEQRCLIIPTKAVDLMANVRSSPSRSWIADGR 60

[Close]

BLAST of CSPI02G11440 vs. NCBI nr
Match: TYK13542.1 (hypothetical protein E5676_scaffold299G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 3.2e-13
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = 0


Query: 9  REVDLTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGKAEPTCP 68
          R VDLT+NV S  SRSWI  +EA+ +CPIVPTR VDLT  AR SPS+SWI   +AE  CP
Sbjct: 6  RAVDLTVNVGSSSSRSWITTNEAKRKCPIVPTRAVDLTANARPSPSKSWIAHDEAERRCP 65

Query: 69 IVPT 73
          IV T
Sbjct: 66 IVRT 69

[Close]

BLAST of CSPI02G11440 vs. NCBI nr
Match: KAA0052333.1 (hypothetical protein E6C27_scaffold207G001710 [Cucumis melo var. makuwa] >TYK01893.1 hypothetical protein E5676_scaffold113G001570 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 41/60 (68.33%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 13  LTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGKAEPTCPIVPT 72
           L  NV+S  SRSWI D+E + RCPIVPTREVDLT  ARSSPSRS I D K E  C IVPT
Sbjct: 112 LMANVESSHSRSWITDEETKRRCPIVPTREVDLTANARSSPSRSCIADDKTERRCLIVPT 171

[Close]

BLAST of CSPI02G11440 vs. NCBI nr
Match: KAA0052334.1 (hypothetical protein E6C27_scaffold207G001720 [Cucumis melo var. makuwa] >TYK01894.1 hypothetical protein E5676_scaffold113G001580 [Cucumis melo var. makuwa])

HSP 1 Score: 78.6 bits (192), Expect = 3.0e-11
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = 0


Query: 3  MLDHSYREVDLTINVQSFPSRSWIADDEAESRCPIVPTREVDLTTKARSSPSRSWIVDGK 62
          M+D SYR+VD T NVQ   SRSWIA D+ E RC I+PTREVD+    R SPSRSWI +  
Sbjct: 1  MIDRSYRDVDRTANVQLSASRSWIAGDKVERRCLIIPTREVDVMANTRLSPSRSWIANDG 60

Query: 63 AEP 66
            P
Sbjct: 61 VTP 63

The following BLAST results are available for this feature:

BLAST of CSPI02G11440 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G11440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJ00	1.8e-14	68.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CQ76	1.6e-13	64.06	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BQC5	7.8e-13	68.33	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UAE0	1.5e-11	58.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V4Z7	2.6e-08	49.46	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of CSPI02G11440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651847.1	9.7e-26	96.83	hypothetical protein Csa_005992 [Cucumis sativus]	[more]
KAA0043383.1	3.8e-14	68.33	hypothetical protein E6C27_scaffold588G00500 [Cucumis melo var. makuwa]	[more]
TYK13542.1	3.2e-13	64.06	hypothetical protein E5676_scaffold299G00160 [Cucumis melo var. makuwa]	[more]
KAA0052333.1	1.6e-12	68.33	hypothetical protein E6C27_scaffold207G001710 [Cucumis melo var. makuwa] >TYK018...	[more]
KAA0052334.1	3.0e-11	58.73	hypothetical protein E6C27_scaffold207G001720 [Cucumis melo var. makuwa] >TYK018...	[more]

BLAST of CSPI02G11440 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G11440.1	CSPI02G11440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0003824	catalytic activity