CSPI02G11420 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G11420
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	MYB transcription factor
Location	Chr2: 11687135 .. 11687417 (-)
RNA-Seq Expression	CSPI02G11420
Synteny	CSPI02G11420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAACCTCTATCAGTTTTTCTTATTCAGTTAATAATCTTTCTCTACTTTCCTTTTTCCTCTGTATAAATTACTCTCCACACCAAACCTTGGGGTTATGGCTGGGGTTGCAGGGGATGATGTGAAGTCGTGTCCTCGGGGACATTGGCGTCCAGCCGAGGACGAGAAGCTCCGACAGTTAGTTCAGCAGCATGGCCCGCAAAACTGGAATTTTGTTGCAGAAAAACTACAAGGAAGATCAGGCATATCTCTTTTTGTAGTATCATTTGACAAGTTTTTGTAG

mRNA sequence

AAACAACCTCTATCAGTTTTTCTTATTCAGTTAATAATCTTTCTCTACTTTCCTTTTTCCTCTGTATAAATTACTCTCCACACCAAACCTTGGGGTTATGGCTGGGGTTGCAGGGGATGATGTGAAGTCGTGTCCTCGGGGACATTGGCGTCCAGCCGAGGACGAGAAGCTCCGACAGTTAGTTCAGCAGCATGGCCCGCAAAACTGGAATTTTGTTGCAGAAAAACTACAAGGAAGATCAGGCATATCTCTTTTTGTAGTATCATTTGACAAGTTTTTGTAG

Coding sequence (CDS)

ATGGCTGGGGTTGCAGGGGATGATGTGAAGTCGTGTCCTCGGGGACATTGGCGTCCAGCCGAGGACGAGAAGCTCCGACAGTTAGTTCAGCAGCATGGCCCGCAAAACTGGAATTTTGTTGCAGAAAAACTACAAGGAAGATCAGGCATATCTCTTTTTGTAGTATCATTTGACAAGTTTTTGTAG

Protein sequence

MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGISLFVVSFDKFL*

Homology

[Close]

BLAST of CSPI02G11420 vs. ExPASy Swiss-Prot
Match: Q5NBM8 (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 7.0e-13
Identity = 34/49 (69.39%), Postives = 37/49 (75.51%), Query Frame = 0


Query: 3  GVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          GV G   K C RGHWRPAED KL+ LV Q+GPQNWN +AEKL GRSG S
Sbjct: 41 GVQG---KLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKS 86

[Close]

BLAST of CSPI02G11420 vs. ExPASy Swiss-Prot
Match: Q6R0C4 (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-12
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 12 CPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          C RGHWRPAEDEKLR+LV+Q GP NWN +A+KL GRSG S
Sbjct: 3  CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKS 42

[Close]

BLAST of CSPI02G11420 vs. ExPASy Swiss-Prot
Match: Q6R053 (Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.9e-12
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1   MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
           M G +G + K C RGHWRP ED KL++LV Q GPQNWN ++  L GRSG S
Sbjct: 80  MRGKSGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKS 130

[Close]

BLAST of CSPI02G11420 vs. ExPASy Swiss-Prot
Match: Q9SEZ4 (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-11
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 11  SCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
           S  RGHWRPAED KL++LV  +GPQNWN +AEKLQGRSG S
Sbjct: 104 SVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKS 144

[Close]

BLAST of CSPI02G11420 vs. ExPASy Swiss-Prot
Match: Q9FX36 (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 12 CPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          C RGHWRPAEDEKL+ LV+Q+GP NWN +A KL GRSG S
Sbjct: 4  CSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKS 43

[Close]

BLAST of CSPI02G11420 vs. ExPASy TrEMBL
Match: A0A0A0LIG5 (HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G229950 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.6e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGISLFVVSFDKF 60
          MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGISLFVVSFDKF
Sbjct: 1  MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGISLFVVSFDKF 60

Query: 61 L 62
          L
Sbjct: 61 L 61

[Close]

BLAST of CSPI02G11420 vs. ExPASy TrEMBL
Match: A0A6J1F870 (transcription factor MYB117-like OS=Cucurbita moschata OX=3662 GN=LOC111443207 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.1e-16
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2  AGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          A  +GDD KSCPRGHWRP EDEKLR+LV+Q+G QNWNF+AEKLQGRSG S
Sbjct: 8  ASTSGDDTKSCPRGHWRPTEDEKLRRLVKQYGAQNWNFIAEKLQGRSGKS 57

[Close]

BLAST of CSPI02G11420 vs. ExPASy TrEMBL
Match: A0A5B7BQ73 (Putative trichome differentiation protein GL1 OS=Davidia involucrata OX=16924 GN=Din_040533 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 0


Query: 3  GVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          G + DD ++CPRGHWRPAEDEKLRQLV+Q+GPQNWN +AEKLQGRSG S
Sbjct: 6  GASSDDARTCPRGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQGRSGKS 54

[Close]

BLAST of CSPI02G11420 vs. ExPASy TrEMBL
Match: A0A6G7PT78 (MYB transcription factor OS=Macadamia integrifolia OX=60698 GN=MYB4 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 3  GVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          G   DD K+CPRGHWRPAEDEKLRQLV+Q+GPQNWN +AEKLQGRSG S
Sbjct: 11 GAPSDDSKTCPRGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQGRSGKS 59

[Close]

BLAST of CSPI02G11420 vs. ExPASy TrEMBL
Match: A0A5J5BU44 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_002762 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.6e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 3  GVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          G + DD + CPRGHWRPAEDEKLRQLV+Q+GPQNWN +AEKLQGRSG S
Sbjct: 6  GASSDDTRGCPRGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQGRSGKS 54

[Close]

BLAST of CSPI02G11420 vs. NCBI nr
Match: KAE8651846.1 (hypothetical protein Csa_006140 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 1  MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSG S
Sbjct: 1  MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGKS 51

[Close]

BLAST of CSPI02G11420 vs. NCBI nr
Match: XP_022936691.1 (transcription factor MYB117-like [Cucurbita moschata])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2  AGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          A  +GDD KSCPRGHWRP EDEKLR+LV+Q+G QNWNF+AEKLQGRSG S
Sbjct: 8  ASTSGDDTKSCPRGHWRPTEDEKLRRLVKQYGAQNWNFIAEKLQGRSGKS 57

[Close]

BLAST of CSPI02G11420 vs. NCBI nr
Match: KAG6592163.1 (Transcription factor CSA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 0


Query: 2  AGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          A  +GDD KSCPRGHWRP EDEKLR+LV+Q+G QNWNF+AEKLQGRSG S
Sbjct: 8  ASTSGDDTKSCPRGHWRPTEDEKLRRLVKQYGAQNWNFIAEKLQGRSGKS 57

[Close]

BLAST of CSPI02G11420 vs. NCBI nr
Match: KAF3445579.1 (hypothetical protein FNV43_RR10755 [Rhamnella rubrinervis])

HSP 1 Score: 92.0 bits (227), Expect = 1.9e-15
Identity = 40/50 (80.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 2  AGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          AG   DD KSCPRGHWRPAEDEKLRQLV+Q+G QNWN +AEKLQGRSG S
Sbjct: 10 AGACSDDAKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKS 59

[Close]

BLAST of CSPI02G11420 vs. NCBI nr
Match: KAA8546499.1 (hypothetical protein F0562_002762 [Nyssa sinensis])

HSP 1 Score: 91.3 bits (225), Expect = 3.2e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 3  GVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          G + DD + CPRGHWRPAEDEKLRQLV+Q+GPQNWN +AEKLQGRSG S
Sbjct: 6  GASSDDTRGCPRGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQGRSGKS 54

[Close]

BLAST of CSPI02G11420 vs. TAIR 10
Match: AT1G17950.1 (myb domain protein 52 )

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-13
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 12 CPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          C RGHWRPAEDEKLR+LV+Q GP NWN +A+KL GRSG S
Sbjct: 3  CSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKS 42

[Close]

BLAST of CSPI02G11420 vs. TAIR 10
Match: AT4G33450.1 (myb domain protein 69 )

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-13
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 0


Query: 11 SCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          SC RGHWRP ED+ LRQLV+Q+GP+NWNF+A+ L GRSG S
Sbjct: 16 SCQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKS 56

[Close]

BLAST of CSPI02G11420 vs. TAIR 10
Match: AT5G17800.1 (myb domain protein 56 )

HSP 1 Score: 70.9 bits (172), Expect = 4.2e-13
Identity = 30/51 (58.82%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 1   MAGVAGDDVKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
           M G +G + K C RGHWRP ED KL++LV Q GPQNWN ++  L GRSG S
Sbjct: 80  MRGKSGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKS 130

[Close]

BLAST of CSPI02G11420 vs. TAIR 10
Match: AT1G69560.1 (myb domain protein 105 )

HSP 1 Score: 70.1 bits (170), Expect = 7.1e-13
Identity = 30/41 (73.17%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 11  SCPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
           S  RGHWRPAED KL++LV  +GPQNWN +AEKLQGRSG S
Sbjct: 104 SVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKS 144

[Close]

BLAST of CSPI02G11420 vs. TAIR 10
Match: AT1G73410.1 (myb domain protein 54 )

HSP 1 Score: 69.7 bits (169), Expect = 9.3e-13
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 12 CPRGHWRPAEDEKLRQLVQQHGPQNWNFVAEKLQGRSGIS 52
          C RGHWRPAEDEKL+ LV+Q+GP NWN +A KL GRSG S
Sbjct: 4  CSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKS 43

The following BLAST results are available for this feature:

BLAST of CSPI02G11420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5NBM8	7.0e-13	69.39	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
Q6R0C4	1.5e-12	75.00	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]
Q6R053	5.9e-12	58.82	Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1	[more]
Q9SEZ4	1.0e-11	73.17	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]
Q9FX36	1.3e-11	72.50	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=1 SV=1	[more]

BLAST of CSPI02G11420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIG5	3.6e-28	100.00	HTH myb-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G22995...	[more]
A0A6J1F870	9.1e-16	78.00	transcription factor MYB117-like OS=Cucurbita moschata OX=3662 GN=LOC111443207 P...	[more]
A0A5B7BQ73	1.2e-15	77.55	Putative trichome differentiation protein GL1 OS=Davidia involucrata OX=16924 GN...	[more]
A0A6G7PT78	1.6e-15	79.59	MYB transcription factor OS=Macadamia integrifolia OX=60698 GN=MYB4 PE=2 SV=1	[more]
A0A5J5BU44	1.6e-15	77.55	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_002762 PE=4 SV=1	[more]

BLAST of CSPI02G11420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651846.1	3.0e-21	98.04	hypothetical protein Csa_006140 [Cucumis sativus]	[more]
XP_022936691.1	1.9e-15	78.00	transcription factor MYB117-like [Cucurbita moschata]	[more]
KAG6592163.1	1.9e-15	78.00	Transcription factor CSA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF3445579.1	1.9e-15	80.00	hypothetical protein FNV43_RR10755 [Rhamnella rubrinervis]	[more]
KAA8546499.1	3.2e-15	77.55	hypothetical protein F0562_002762 [Nyssa sinensis]	[more]

BLAST of CSPI02G11420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G17950.1	1.1e-13	75.00	myb domain protein 52	[more]
AT4G33450.1	1.1e-13	70.73	myb domain protein 69	[more]
AT5G17800.1	4.2e-13	58.82	myb domain protein 56	[more]
AT1G69560.1	7.1e-13	73.17	myb domain protein 105	[more]
AT1G73410.1	9.3e-13	72.50	myb domain protein 54	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 13..59 e-value: 0.0034 score: 26.6
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 14..49 score: 7.421731
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 17..52 e-value: 8.21744E-10 score: 46.4146
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..49 e-value: 3.6E-10 score: 39.9
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 10..52 score: 13.420889
None	No IPR available	GENE3D	1.10.10.60		coord: 14..53 e-value: 8.7E-15 score: 56.4
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 5..51
None	No IPR available	PANTHER	PTHR45614:SF100	MYB TRANSCRIPTION FACTOR	coord: 5..51
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 12..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G11420.1	CSPI02G11420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding