CSPI02G11040 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G11040
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ubiquitin-like-specific protease ESD4 isoform X2
Location	Chr2: 11283046 .. 11283411 (-)
RNA-Seq Expression	CSPI02G11040
Synteny	CSPI02G11040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCTGAGTACTTTCGATATTTTGTGGAGTTAGAAAACGATAGATTGGTTGAAGAAGCATATGTTGTAAAGGATAAAAATATTGTAGAAAGAATATCTTCTTTACATGAAGATATTGAAGATTTAAAAAAACAGCACAAAGAAGATTTAGACCACCTGAAAAAAGGACAAGAGGAGATCGTTCATTTGTTACTTTCCCGAACAGAAGTTGTGAATCAAAAACTTCCACACAAATGTGAAAGTGAAAAACAATCTGAATCTGAAGAGTCCTTGGAAAAGAATCATCTTCCATCAACGAGTCTAGAAATGATAGATGCTGATACTGATACTAACATTGATCAAGCAGTTGCTTATGCAACTTAA

mRNA sequence

ATGTCATCTGAGTACTTTCGATATTTTGTGGAGTTAGAAAACGATAGATTGGTTGAAGAAGCATATGTTGTAAAGGATAAAAATATTGTAGAAAGAATATCTTCTTTACATGAAGATATTGAAGATTTAAAAAAACAGCACAAAGAAGATTTAGACCACCTGAAAAAAGGACAAGAGGAGATCGTTCATTTGTTACTTTCCCGAACAGAAGTTGTGAATCAAAAACTTCCACACAAATGTGAAAGTGAAAAACAATCTGAATCTGAAGAGTCCTTGGAAAAGAATCATCTTCCATCAACGAGTCTAGAAATGATAGATGCTGATACTGATACTAACATTGATCAAGCAGTTGCTTATGCAACTTAA

Coding sequence (CDS)

ATGTCATCTGAGTACTTTCGATATTTTGTGGAGTTAGAAAACGATAGATTGGTTGAAGAAGCATATGTTGTAAAGGATAAAAATATTGTAGAAAGAATATCTTCTTTACATGAAGATATTGAAGATTTAAAAAAACAGCACAAAGAAGATTTAGACCACCTGAAAAAAGGACAAGAGGAGATCGTTCATTTGTTACTTTCCCGAACAGAAGTTGTGAATCAAAAACTTCCACACAAATGTGAAAGTGAAAAACAATCTGAATCTGAAGAGTCCTTGGAAAAGAATCATCTTCCATCAACGAGTCTAGAAATGATAGATGCTGATACTGATACTAACATTGATCAAGCAGTTGCTTATGCAACTTAA

Protein sequence

MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEEIVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTDTNIDQAVAYAT*

Homology

[Close]

BLAST of CSPI02G11040 vs. ExPASy TrEMBL
Match: A0A5A7VE89 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00660 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.5e-33
Identity = 84/110 (76.36%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           M SEYFRYF+ELENDRL EEA  +K+ N+ ERISSLHEDI+DLKKQHKEDL+ LKKGQEE
Sbjct: 65  MKSEYFRYFLELENDRLDEEACAMKESNMAERISSLHEDIKDLKKQHKEDLNCLKKGQEE 124

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTD 111
           IV LLLS TEVVNQ+L HKCESEKQ  S+E LEKN  P  SLEMIDAD D
Sbjct: 125 IVRLLLSLTEVVNQRLSHKCESEKQ--SQEPLEKNPPPPISLEMIDADVD 172

[Close]

BLAST of CSPI02G11040 vs. ExPASy TrEMBL
Match: A0A5A7VIA9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1081G00090 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.2e-33
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           M SEYFRYF+ELEND+L EEA  +K+ N+ ERISSLHEDI+DLKKQHKEDL+ LKKGQEE
Sbjct: 125 MKSEYFRYFLELENDKLDEEACAMKESNMAERISSLHEDIQDLKKQHKEDLECLKKGQEE 184

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTD 111
           IV LLLS TEVVNQ+L HKCESEKQ  S+E LEKN  P  SLEMIDAD D
Sbjct: 185 IVRLLLSLTEVVNQRLSHKCESEKQ--SQEPLEKNPPPPISLEMIDADVD 232

[Close]

BLAST of CSPI02G11040 vs. ExPASy TrEMBL
Match: A0A5D3DFX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3009G00010 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.2e-33
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           M SEYFRYF+ELEND+L EEA  +K+ N+ ERISSLHEDI+DLKKQHKEDL+ LKKGQEE
Sbjct: 125 MKSEYFRYFLELENDKLDEEACAMKESNMAERISSLHEDIQDLKKQHKEDLECLKKGQEE 184

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTD 111
           IV LLLS TEVVNQ+L HKCESEKQ  S+E LEKN  P  SLEMIDAD D
Sbjct: 185 IVRLLLSLTEVVNQRLSHKCESEKQ--SQEPLEKNPPPPISLEMIDADVD 232

[Close]

BLAST of CSPI02G11040 vs. ExPASy TrEMBL
Match: A0A5D3C8N2 (40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00170 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 7.2e-33
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           M SEYFRYF+ELEND+L EEA  +K+ N+ ERISSLHEDI+DLKKQHKEDL+ LKKGQEE
Sbjct: 125 MKSEYFRYFLELENDKLDEEACAMKESNMAERISSLHEDIQDLKKQHKEDLECLKKGQEE 184

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTD 111
           IV LLLS TEVVNQ+L HKCESEKQ  S+E LEKN  P  SLEMIDAD D
Sbjct: 185 IVRLLLSLTEVVNQRLSHKCESEKQ--SQEPLEKNPPPPISLEMIDADVD 232

[Close]

BLAST of CSPI02G11040 vs. ExPASy TrEMBL
Match: A0A5D3CTS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold892G00380 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.6e-32
Identity = 83/110 (75.45%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           M SEYFRYF+ELENDRL EEA  +K++N+ ERISSLHEDI+DLK+QHKEDLD LKKGQEE
Sbjct: 1   MKSEYFRYFLELENDRLDEEACAMKERNMAERISSLHEDIKDLKEQHKEDLDCLKKGQEE 60

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTD 111
           IV LLLS TEVVNQ+L HKCESEKQ  S++ LEKN  P  SLEMIDAD D
Sbjct: 61  IVCLLLSLTEVVNQRLSHKCESEKQ--SQKPLEKNPPPPISLEMIDADVD 108

[Close]

BLAST of CSPI02G11040 vs. NCBI nr
Match: KAE8650946.1 (hypothetical protein Csa_001290 [Cucumis sativus])

HSP 1 Score: 209.5 bits (532), Expect = 1.6e-50
Identity = 113/121 (93.39%), Postives = 115/121 (95.04%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE
Sbjct: 117 MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 176

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTDTNIDQAVAYA 120
           IVHLLLS TEVVNQ+LPHKCESEKQ  SEESLEKNH PS SLEMIDAD D+NIDQAVAYA
Sbjct: 177 IVHLLLSLTEVVNQRLPHKCESEKQ--SEESLEKNHPPSMSLEMIDADIDSNIDQAVAYA 235

Query: 121 T 122
           T
Sbjct: 237 T 235

[Close]

BLAST of CSPI02G11040 vs. NCBI nr
Match: KAE8651836.1 (hypothetical protein Csa_006724 [Cucumis sativus])

HSP 1 Score: 208.4 bits (529), Expect = 3.5e-50
Identity = 113/121 (93.39%), Postives = 114/121 (94.21%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           MSSEYFRYFVELEN RLVEEAYVV DKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE
Sbjct: 117 MSSEYFRYFVELENHRLVEEAYVVNDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 176

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTDTNIDQAVAYA 120
           IVHLLLS TEVVN+KLPHKCESEKQ  SEESLEKNH PSTSLEMIDAD DTNIDQAVAYA
Sbjct: 177 IVHLLLSLTEVVNKKLPHKCESEKQ--SEESLEKNHPPSTSLEMIDADIDTNIDQAVAYA 235

Query: 121 T 122
           T
Sbjct: 237 T 235

[Close]

BLAST of CSPI02G11040 vs. NCBI nr
Match: KAE8653073.1 (hypothetical protein Csa_019650, partial [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 3.7e-47
Identity = 108/121 (89.26%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           MSSEYF+YFVELENDRLVEEAYVVKDKNIVE ISSLHEDIEDLKKQHK+DLDHLKKGQEE
Sbjct: 7   MSSEYFQYFVELENDRLVEEAYVVKDKNIVEIISSLHEDIEDLKKQHKKDLDHLKKGQEE 66

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTDTNIDQAVAYA 120
           IVHLLLS T+VVNQ LPHKCESEKQ  SEESL+KNH PS SLEMID D DTNIDQAVAYA
Sbjct: 67  IVHLLLSLTKVVNQILPHKCESEKQ--SEESLKKNHPPSMSLEMIDVDIDTNIDQAVAYA 125

Query: 121 T 122
           T
Sbjct: 127 T 125

[Close]

BLAST of CSPI02G11040 vs. NCBI nr
Match: KAA0063839.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 84/110 (76.36%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           M SEYFRYF+ELENDRL EEA  +K+ N+ ERISSLHEDI+DLKKQHKEDL+ LKKGQEE
Sbjct: 65  MKSEYFRYFLELENDRLDEEACAMKESNMAERISSLHEDIKDLKKQHKEDLNCLKKGQEE 124

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTD 111
           IV LLLS TEVVNQ+L HKCESEKQ  S+E LEKN  P  SLEMIDAD D
Sbjct: 125 IVRLLLSLTEVVNQRLSHKCESEKQ--SQEPLEKNPPPPISLEMIDADVD 172

[Close]

BLAST of CSPI02G11040 vs. NCBI nr
Match: KAA0031317.1 (uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0034561.1 uncharacterized protein E6C27_scaffold65G005770 [Cucumis melo var. makuwa] >KAA0035329.1 uncharacterized protein E6C27_scaffold228G001300 [Cucumis melo var. makuwa] >KAA0037560.1 uncharacterized protein E6C27_scaffold277G001820 [Cucumis melo var. makuwa] >KAA0038033.1 uncharacterized protein E6C27_scaffold36G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 1.5e-32
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MSSEYFRYFVELENDRLVEEAYVVKDKNIVERISSLHEDIEDLKKQHKEDLDHLKKGQEE 60
           M SEYFRYF+ELEND+L EEA  +K+ N+ ERISSLHEDI+DLKKQHKEDL+ LKKGQEE
Sbjct: 125 MKSEYFRYFLELENDKLDEEACAMKESNMAERISSLHEDIQDLKKQHKEDLECLKKGQEE 184

Query: 61  IVHLLLSRTEVVNQKLPHKCESEKQSESEESLEKNHLPSTSLEMIDADTD 111
           IV LLLS TEVVNQ+L HKCESEKQ  S+E LEKN  P  SLEMIDAD D
Sbjct: 185 IVRLLLSLTEVVNQRLSHKCESEKQ--SQEPLEKNPPPPISLEMIDADVD 232

The following BLAST results are available for this feature:

BLAST of CSPI02G11040 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G11040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VE89	5.5e-33	76.36	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00...	[more]
A0A5A7VIA9	7.2e-33	75.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DFX6	7.2e-33	75.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C8N2	7.2e-33	75.45	40S ribosomal protein S15-4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CTS8	1.6e-32	75.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI02G11040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650946.1	1.6e-50	93.39	hypothetical protein Csa_001290 [Cucumis sativus]	[more]
KAE8651836.1	3.5e-50	93.39	hypothetical protein Csa_006724 [Cucumis sativus]	[more]
KAE8653073.1	3.7e-47	89.26	hypothetical protein Csa_019650, partial [Cucumis sativus]	[more]
KAA0063839.1	1.1e-32	76.36	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0031317.1	1.5e-32	75.45	uncharacterized protein E6C27_scaffold139G00700 [Cucumis melo var. makuwa] >KAA0...	[more]

BLAST of CSPI02G11040 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 37..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G11040.1	CSPI02G11040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006508	proteolysis
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome