CSPI02G10410 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G10410
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ras association domain-containing protein 7-like isoform X2
Location	Chr2: 10490638 .. 10491063 (+)
RNA-Seq Expression	CSPI02G10410
Synteny	CSPI02G10410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGGATCTCCATCTCCATCTTTGATGCGGGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCGCCAACTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTCGATGTGTGGATCTCCATCTCCATCTTCGATGTGCGGATCTCCATCTCCATCTTCGATGTGCGGATCTCCATCTTCATCTTCGATGTGCAGATCTTCATCTTCATCTCCATCTTTCACGTGCCGCAGTCGGCCGAATCTCCATCTTCAATTTGTCGCAGCCGATCAAATCTCCATCTCCATTTTTGTCTTCCATGTACTGCAGCCGATGGGATCTCCATCTCCTAAGAAGAATGCTTAG

mRNA sequence

ATGTGGGGATCTCCATCTCCATCTTTGATGCGGGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCGCCAACTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTCGATGTGTGGATCTCCATCTCCATCTTCGATGTGCGGATCTCCATCTCCATCTTCGATGTGCGGATCTCCATCTTCATCTTCGATGTGCAGATCTTCATCTTCATCTCCATCTTTCACGTGCCGCAGTCGGCCGAATCTCCATCTTCAATTTGTCGCAGCCGATCAAATCTCCATCTCCATTTTTGTCTTCCATGTACTGCAGCCGATGGGATCTCCATCTCCTAAGAAGAATGCTTAG

Coding sequence (CDS)

ATGTGGGGATCTCCATCTCCATCTTTGATGCGGGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCGCCAACTTTGATGCGCGTATCTCCATCTCCATCTTTGATGCGCGTATCTCCATCTCCATCTTCGATGTGTGGATCTCCATCTCCATCTTCGATGTGCGGATCTCCATCTCCATCTTCGATGTGCGGATCTCCATCTTCATCTTCGATGTGCAGATCTTCATCTTCATCTCCATCTTTCACGTGCCGCAGTCGGCCGAATCTCCATCTTCAATTTGTCGCAGCCGATCAAATCTCCATCTCCATTTTTGTCTTCCATGTACTGCAGCCGATGGGATCTCCATCTCCTAAGAAGAATGCTTAG

Protein sequence

MWGSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSSMCGSPSPSSMCGSPSPSSMCGSPSSSSMCRSSSSSPSFTCRSRPNLHLQFVAADQISISIFVFHVLQPMGSPSPKKNA*

Homology

[Close]

BLAST of CSPI02G10410 vs. ExPASy TrEMBL
Match: A0A6P8FPC8 (ras association domain-containing protein 7-like isoform X1 OS=Clupea harengus OX=7950 GN=LOC105892641 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 49/78 (62.82%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 4   SPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSS 63
           SPSP L  VSPSP L  VSPSP L  VSPSP L  VSPSP L  +SPSP L  VSPSP S
Sbjct: 160 SPSPELRGVSPSPELRGVSPSPELRGVSPSPELRGVSPSPGLRGMSPSPGLRGVSPSPPS 219

Query: 64  MCGSPSPSSMCGSPSPSS 82
              S SPSS    P PSS
Sbjct: 220 ---SQSPSSFPPIPPPSS 234

[Close]

BLAST of CSPI02G10410 vs. ExPASy TrEMBL
Match: A0A6P8F8Y1 (ras association domain-containing protein 7-like isoform X2 OS=Clupea harengus OX=7950 GN=LOC105892641 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.5e-05
Identity = 49/78 (62.82%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 4   SPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSS 63
           SPSP L  VSPSP L  VSPSP L  VSPSP L  VSPSP L  +SPSP L  VSPSP S
Sbjct: 160 SPSPELRGVSPSPELRGVSPSPELRGVSPSPELRGVSPSPGLRGMSPSPGLRGVSPSPPS 219

Query: 64  MCGSPSPSSMCGSPSPSS 82
              S SPSS    P PSS
Sbjct: 220 ---SQSPSSFPPIPPPSS 234

[Close]

BLAST of CSPI02G10410 vs. ExPASy TrEMBL
Match: A0A3B4C438 (Homeobox protein ESX1-like OS=Pygocentrus nattereri OX=42514 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-05
Identity = 49/126 (38.89%), Postives = 63/126 (50.00%), Query Frame = 0


Query: 6   SPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSSMC 65
           SP LM V  SP +M + PSP +M + PSP +M + PSP +M V PSP +M + PSP  M 
Sbjct: 45  SPPLMAVDASPPMMAIDPSPPMMAIDPSPPMMAIDPSPPMMAVDPSPPMMAIDPSPPMMA 104

Query: 66  GSPSPSSMCGSPSPSSMCGSPSSSSMCRSSSSSPSFTCRSRPNLHLQFVAADQISISIFV 125
             PSP  M   PSP  M   PS   M  +S+        S P +      A QI   +  
Sbjct: 105 VHPSPPMMAIDPSPPMMAVHPSPPMMVANSNQPMMVADSSPPRVIQPVPVAQQIPSPV-- 164

Query: 126 FHVLQP 132
             V+QP
Sbjct: 165 --VMQP 166

[Close]

BLAST of CSPI02G10410 vs. ExPASy TrEMBL
Match: A0A1I8IV57 (Fibrinogen C-terminal domain-containing protein OS=Macrostomum lignano OX=282301 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-05
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 0


Query: 5   PSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSSM 64
           PSP+L+   PSP+L+   PSP+L+   PSP+L+   PSP L+   PSP+L+   PSP+ +
Sbjct: 180 PSPALLMTHPSPALLMTHPSPALLMTHPSPALLMTHPSPALLMTHPSPALLMTHPSPALL 239

Query: 65  CGSPSPSSMCGSPSPSSMCGSPSSS-SMCRSSSSSPSFTCRSRPNLHLQFVAADQISIS 123
              PSP+ +   PSP+ +   PS +  M   S++SPS  CRSR       V++ +I++S
Sbjct: 240 MTHPSPALLMTHPSPALLMTHPSPALLMTHPSTNSPS--CRSRSRTQPTPVSSSKINLS 296

[Close]

BLAST of CSPI02G10410 vs. ExPASy TrEMBL
Match: A0A3Q3FQS5 (Uncharacterized protein OS=Labrus bergylta OX=56723 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.3e-05
Identity = 58/104 (55.77%), Postives = 61/104 (58.65%), Query Frame = 0


Query: 4   SPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRV--SPSP 63
           SPSPS    SPSPS    SPSPS    SPSPS    SPSP+    SPSPS      SPSP
Sbjct: 355 SPSPSSRSTSPSPS---PSPSPSGRSTSPSPSSRSTSPSPSGRSTSPSPSSRSTSPSPSP 414

Query: 64  SSMCGSPSPSSMCGSPSPSSMCGSPSSSSMCRSSSSSPSFTCRS 106
           SS   SPSPSS   SPSPSS+  SPS SS     S SPS + RS
Sbjct: 415 SSRSTSPSPSSRSTSPSPSSLSTSPSPSSWSTGPSPSPSPSSRS 455

[Close]

BLAST of CSPI02G10410 vs. NCBI nr
Match: XP_034371140.1 (mucin-20 [Arvicanthis niloticus])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-09
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 4   SPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSS 63
           SP+PS +  SP+PS +  SP PS +  SP+PS +  SPSP+ +  SPSPS +  SPSPSS
Sbjct: 237 SPAPSSLTSSPAPSSLTTSPEPSSLTSSPAPSSLTTSPSPSSLTSSPSPSSLTTSPSPSS 296

Query: 64  MCGSPSPSSMCGSPSPSSMCGSPSSSSMCRSSSSSPSFTCRSRPN 109
           +  SPSPSS+  SPSPSS+  SPS SS+  S +SS S T  S P+
Sbjct: 297 LTSSPSPSSLTTSPSPSSLTSSPSPSSLITSPASS-SLTSSSAPS 340

[Close]

BLAST of CSPI02G10410 vs. NCBI nr
Match: XP_017568287.2 (homeobox protein ESX1-like [Pygocentrus nattereri] >XP_017568288.2 homeobox protein ESX1-like [Pygocentrus nattereri])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 50/127 (39.37%), Postives = 65/127 (51.18%), Query Frame = 0


Query: 5   PSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSSM 64
           PSP +M + PSP +M + PSP +M V PSPS+M + PSP +M V PS  +M + PSP  M
Sbjct: 116 PSPPMMAIDPSPPMMAIDPSPPMMAVHPSPSMMAIDPSPPMMAVHPSQPMMAIDPSPPMM 175

Query: 65  CGSPSPSSMCGSPSPSSMCGSPSSSSMCRSSSSSPSFTCRSRPNLHLQFVAADQISISIF 124
              PSP  M   PSP  M   PS   M  +S+        S P +      A QI   + 
Sbjct: 176 AVHPSPPMMAIDPSPPMMAVHPSPPMMVANSNQPMMVADSSPPRVIQPVPVAQQIPSPV- 235

Query: 125 VFHVLQP 132
              V+QP
Sbjct: 236 ---VMQP 238

[Close]

BLAST of CSPI02G10410 vs. NCBI nr
Match: XP_031424980.1 (ras association domain-containing protein 7-like isoform X1 [Clupea harengus] >XP_031424981.1 ras association domain-containing protein 7-like isoform X1 [Clupea harengus] >XP_031424982.1 ras association domain-containing protein 7-like isoform X1 [Clupea harengus])

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-05
Identity = 49/78 (62.82%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 4   SPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSS 63
           SPSP L  VSPSP L  VSPSP L  VSPSP L  VSPSP L  +SPSP L  VSPSP S
Sbjct: 160 SPSPELRGVSPSPELRGVSPSPELRGVSPSPELRGVSPSPGLRGMSPSPGLRGVSPSPPS 219

Query: 64  MCGSPSPSSMCGSPSPSS 82
              S SPSS    P PSS
Sbjct: 220 ---SQSPSSFPPIPPPSS 234

[Close]

BLAST of CSPI02G10410 vs. NCBI nr
Match: XP_031424983.1 (ras association domain-containing protein 7-like isoform X2 [Clupea harengus])

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-05
Identity = 49/78 (62.82%), Postives = 50/78 (64.10%), Query Frame = 0


Query: 4   SPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPSS 63
           SPSP L  VSPSP L  VSPSP L  VSPSP L  VSPSP L  +SPSP L  VSPSP S
Sbjct: 160 SPSPELRGVSPSPELRGVSPSPELRGVSPSPELRGVSPSPGLRGMSPSPGLRGVSPSPPS 219

Query: 64  MCGSPSPSSMCGSPSPSS 82
              S SPSS    P PSS
Sbjct: 220 ---SQSPSSFPPIPPPSS 234

[Close]

BLAST of CSPI02G10410 vs. NCBI nr
Match: KAE9616589.1 (putative PWI domain-containing protein [Lupinus albus])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 51/94 (54.26%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 3   GSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPSLMRVSPSPTLMRVSPSPSLMRVSPSPS 62
           GSPSPS  R SPSPS  R SPSPS  R SPSPS  R SPSP+    SPSP+    SPSP+
Sbjct: 338 GSPSPSRRRKSPSPSRRRRSPSPSRRRRSPSPSRRRRSPSPSRRHRSPSPARRHRSPSPA 397

Query: 63  SMCGSPSPSSMCGSPSPSSMCGSPSSSSMCRSSS 97
               SPSP+    SPSP+    SPS +   RS S
Sbjct: 398 GRHRSPSPAGRRRSPSPAGRRRSPSPAGRRRSPS 431

The following BLAST results are available for this feature:

BLAST of CSPI02G10410 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G10410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P8FPC8	1.5e-05	62.82	ras association domain-containing protein 7-like isoform X1 OS=Clupea harengus O...	[more]
A0A6P8F8Y1	1.5e-05	62.82	ras association domain-containing protein 7-like isoform X2 OS=Clupea harengus O...	[more]
A0A3B4C438	2.6e-05	38.89	Homeobox protein ESX1-like OS=Pygocentrus nattereri OX=42514 PE=3 SV=1	[more]
A0A1I8IV57	3.3e-05	39.50	Fibrinogen C-terminal domain-containing protein OS=Macrostomum lignano OX=282301...	[more]
A0A3Q3FQS5	3.3e-05	55.77	Uncharacterized protein OS=Labrus bergylta OX=56723 PE=4 SV=1	[more]

BLAST of CSPI02G10410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_034371140.1	3.5e-09	52.38	mucin-20 [Arvicanthis niloticus]	[more]
XP_017568287.2	1.1e-05	39.37	homeobox protein ESX1-like [Pygocentrus nattereri] >XP_017568288.2 homeobox prot...	[more]
XP_031424980.1	3.1e-05	62.82	ras association domain-containing protein 7-like isoform X1 [Clupea harengus] >X...	[more]
XP_031424983.1	3.1e-05	62.82	ras association domain-containing protein 7-like isoform X2 [Clupea harengus]	[more]
KAE9616589.1	1.2e-04	54.26	putative PWI domain-containing protein [Lupinus albus]	[more]

BLAST of CSPI02G10410 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G10410.1	CSPI02G10410.1	mRNA