CSPI02G09830 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G09830
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	late embryogenesis abundant protein 1 isoform X1
Location	Chr2: 9862343 .. 9864065 (+)
RNA-Seq Expression	CSPI02G09830
Synteny	CSPI02G09830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAATCAAAAAACCAAAAACAAAAAGTCACCTTGATTAGTTTCACAGCTACCAATTCAAGTTTCTTATTTTCCAAACCAAAAAAAGAAAAAAGAAAAAGGACAGAAAGAGAAGGAGAAATATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGTCATTCCAACTTTCTATTCCTTTCTTTTGCTTTTTACTTGAAATAAGTTTTGATAACTCTCCAAAATTAAATCTTACATTATTAGTTAGTAGCCTCGTACCTAAATTTTATATTTACTTAATGGTTAGATATCTCATTTTAGTTTTCGTACTTTTATAGTTTAATTATTGATTAGACCCGACCATTTTCTTGAATTGAAATCTTCACTTATTTTTTCTTTTTTTGTAAAAAGTTAAATAAAACCGTTTAAAACGCACTCATTTAACCTTATTCGATTTTGTCCAATTTTGAATTTTTTTCCAAATATAACTTTGAAATTGTAAAATCTTAATTTTTTTTCATAATATATTTTGTTTTTGGGGTTTGGATAATGAGGGGCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTATGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGGTAATACTTCTAGAATGCATTTAATCATTCTAAACAAATTTTTAATACTGAAATTCGGTATCAACTGTAAATTTATAATCTTCGGAAGAGAATCAAACAAATATATGCCTGCAAAATAGAAAAAAACTTGCATCGATGTGGTGCTTGACCATCAATACTCCGACAATCAAGTCCCTCTAACTGTTTAAAGAGAGCTAGAGAGTATAAAAGTTAATAGGTATTTCAATGTCCATCAAATGACATATCATTGTTCCCTTGATTCATAAGAAATAAGTCTTGTACCGGTTATTTACTAATTAATCCTTGGGTAATTAATTAAGTTATTACTTAGTAACACAAGCATGTGCAAAAGTAAAACACTTCACCTAGTCTTTTCTGTCATAAGTTTGAGCCCTATACTTAGATACTATGACTTGATGGCCGACGATTCTATATACGAGTCCGTCTTTCAAACTTCTACTCTTCAACTCTCTCTAAACCATTATTAACTTGATCGTCGGAATGTTGGTGGTCAAGCAACATATTGGTACAAGTTTTTCTATTTTGAATAGCATTTGTTTGATTCTCTTTCTAAGATTACAAATTTACAGTTTGATACCAAATTTCAGTTATGAACAAATTCAACATTGACTTTTTTACATAATTTGGTTTGTGATGTTATAATTTTGTTGCAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGAAGAACAAGATCTTTAAAATAGTTATTAATTTTAAATTTATTATTAATACCTCTTTATTTTTTCTATAGGTTTGTGTCCTATATGTTCATTAGGGCATGGGAAGAACAATTCCTCTGTTTGGAATTTGGATATACATTTTTTTCAATGTAATATAATAAGGCATAGCAGATATTGCAAATGCATAAATGAAGACTCCATAAGGGTTCACTCTCCCTCCCACTTTCTTTTCTCATATGACAGTTTTCTAAGTAAATG

mRNA sequence

AAAAATCAAAAAACCAAAAACAAAAAGTCACCTTGATTAGTTTCACAGCTACCAATTCAAGTTTCTTATTTTCCAAACCAAAAAAAGAAAAAAGAAAAAGGACAGAAAGAGAAGGAGAAATATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTATGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGAAGAACAAGATCTTTAAAATAGTTATTAATTTTAAATTTATTATTAATACCTCTTTATTTTTTCTATAGGTTTGTGTCCTATATGTTCATTAGGGCATGGGAAGAACAATTCCTCTGTTTGGAATTTGGATATACATTTTTTTCAATGTAATATAATAAGGCATAGCAGATATTGCAAATGCATAAATGAAGACTCCATAAGGGTTCACTCTCCCTCCCACTTTCTTTTCTCATATGACAGTTTTCTAAGTAAATG

Coding sequence (CDS)

ATGTCAAACATGCAGCAAAGTTTGAATGCTGGCCAAACCAAAGGCCAGACCCAGGAAAGAACAGAAGAATGGATGGAAGCCACCAAATTAGGTCCAACAAATGAACCAGGAGACATGTCTAGTAATTCAGCTCAAGCTCAACTATGTGCTAATTCTGCTCAACACTCTACTCACCAACATGATCAAGAACCCAATAGTCTTCTCCAACAGACTGGAGAGAAGATGGTGCACATGGCTCAGGGTGCTGTGGACACAGTGAAGGAAACGCTTGGAATGGGTGACAAGAAATGA

Protein sequence

MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK*

Homology

[Close]

BLAST of CSPI02G09830 vs. ExPASy TrEMBL
Match: A0A0A0LI39 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.5e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
          DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of CSPI02G09830 vs. ExPASy TrEMBL
Match: A0A5A7SQZ2 (Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00540 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSNMQQSLNAGQTKGQTQ RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
          DQEP S LQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of CSPI02G09830 vs. ExPASy TrEMBL
Match: A0A1S3CCL5 (late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
           MSNMQQSLNAGQTKGQTQ RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ 
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
           DQEP S LQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 109 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 144

[Close]

BLAST of CSPI02G09830 vs. ExPASy TrEMBL
Match: A0A1S4E2Z2 (late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499473 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.1e-31
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 13 TKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTG 72
          T+ + + RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ DQEP S LQQTG
Sbjct: 2  TQEKIEARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG 61

Query: 73 EKMVHMAQGAVDTVKETLGMGDKK 97
          EKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 62 EKMVHMAQGAVDTVKETLGMGDKK 85

[Close]

BLAST of CSPI02G09830 vs. ExPASy TrEMBL
Match: A0A6J1CAZ0 (late embryogenesis abundant protein 1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111009834 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.0e-21
Identity = 66/97 (68.04%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSN+QQSLNAGQTKGQTQ RTEEWMEATK   T+E     SNSAQ     +   +S HQ 
Sbjct: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60

Query: 61 DQ-EPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
           Q E    LQQTGEKMV+MAQGAVDTVK+TLGMGDKK
Sbjct: 61 QQKEAAGFLQQTGEKMVNMAQGAVDTVKDTLGMGDKK 96

[Close]

BLAST of CSPI02G09830 vs. NCBI nr
Match: XP_011649123.1 (late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetical protein Csa_005950 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 3.0e-44
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0


Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH
Sbjct: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60

Query: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
          DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of CSPI02G09830 vs. NCBI nr
Match: KAA0031971.1 (late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK16791.1 late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 174.1 bits (440), Expect = 5.9e-40
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSNMQQSLNAGQTKGQTQ RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ 
Sbjct: 1  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 60

Query: 61 DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
          DQEP S LQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 61 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 96

[Close]

BLAST of CSPI02G09830 vs. NCBI nr
Match: XP_008460707.2 (PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 174.1 bits (440), Expect = 5.9e-40
Identity = 90/96 (93.75%), Postives = 91/96 (94.79%), Query Frame = 0


Query: 1   MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
           MSNMQQSLNAGQTKGQTQ RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ 
Sbjct: 49  MSNMQQSLNAGQTKGQTQARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQR 108

Query: 61  DQEPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
           DQEP S LQQTGEKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 109 DQEPTSFLQQTGEKMVHMAQGAVDTVKETLGMGDKK 144

[Close]

BLAST of CSPI02G09830 vs. NCBI nr
Match: XP_016902588.1 (PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 8.5e-31
Identity = 73/84 (86.90%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 13 TKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHDQEPNSLLQQTG 72
          T+ + + RTEEWMEATKLGPT+EP DMSSNSAQAQLCANSAQHSTHQ DQEP S LQQTG
Sbjct: 2  TQEKIEARTEEWMEATKLGPTSEPRDMSSNSAQAQLCANSAQHSTHQRDQEPTSFLQQTG 61

Query: 73 EKMVHMAQGAVDTVKETLGMGDKK 97
          EKMVHMAQGAVDTVKETLGMGDKK
Sbjct: 62 EKMVHMAQGAVDTVKETLGMGDKK 85

[Close]

BLAST of CSPI02G09830 vs. NCBI nr
Match: XP_022138744.1 (late embryogenesis abundant protein 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 6.1e-21
Identity = 66/97 (68.04%), Postives = 72/97 (74.23%), Query Frame = 0


Query: 1  MSNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQH 60
          MSN+QQSLNAGQTKGQTQ RTEEWMEATK   T+E     SNSAQ     +   +S HQ 
Sbjct: 1  MSNIQQSLNAGQTKGQTQARTEEWMEATK-NTTHELNSSDSNSAQLSAQPHQQSNSPHQQ 60

Query: 61 DQ-EPNSLLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
           Q E    LQQTGEKMV+MAQGAVDTVK+TLGMGDKK
Sbjct: 61 QQKEAAGFLQQTGEKMVNMAQGAVDTVKDTLGMGDKK 96

[Close]

BLAST of CSPI02G09830 vs. TAIR 10
Match: AT4G13560.1 (Late embryogenesis abundant protein (LEA) family protein )

HSP 1 Score: 57.4 bits (137), Expect = 7.5e-09
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 0


Query: 5   QQSLNAGQTKGQTQERTEEWMEATK--------------LGPTNEPGDMSSNSAQAQLCA 64
           QQ  NAGQ +GQ QE+ E+W E+ K                  ++  D++ ++       
Sbjct: 3   QQQFNAGQNRGQAQEKAEQWTESAKQTAQSACDKTADLTQSARDKAADLTQSARDKTADG 62

Query: 65  NSAQHSTHQHDQEPNS-LLQQTGEKMVHMAQGAVDTVKETLGMGDKK 97
           + + + + QH+QE  + L  QTGE + +MAQGA+D VK +LGM +KK
Sbjct: 63  SHSANKSAQHNQEQAAGLFGQTGESVKNMAQGALDGVKNSLGMNEKK 109

[Close]

BLAST of CSPI02G09830 vs. TAIR 10
Match: AT1G52680.1 (late embryogenesis abundant protein-related / LEA protein-related )

HSP 1 Score: 44.3 bits (103), Expect = 6.6e-05
Identity = 33/96 (34.38%), Postives = 50/96 (52.08%), Query Frame = 0


Query: 2  SNMQQSLNAGQTKGQTQERTEEWMEATKLGPTNEPGDMSSNSAQAQLCANSAQHSTHQHD 61
          S+ Q S +AG+  GQ Q + EE++        N      + +A     + S  HS H  +
Sbjct: 3  SSQQLSHSAGEVTGQVQLKKEEYL--------NNVSHAMNQNADHHTHSQSQLHSEHDQN 62

Query: 62 -----QEPNSLLQQTGEKMVHMAQGAVDTVKETLGM 93
                + +S++QQTG ++ +MAQGA D VK TLGM
Sbjct: 63 NPSLISQASSVIQQTGGQVKNMAQGAADAVKNTLGM 90

The following BLAST results are available for this feature:

BLAST of CSPI02G09830 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G09830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI39	1.5e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G169690 PE=4 SV=1	[more]
A0A5A7SQZ2	2.9e-40	93.75	Late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CCL5	2.9e-40	93.75	late embryogenesis abundant protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S4E2Z2	4.1e-31	86.90	late embryogenesis abundant protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1CAZ0	3.0e-21	68.04	late embryogenesis abundant protein 1-like isoform X2 OS=Momordica charantia OX=...	[more]

BLAST of CSPI02G09830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649123.1	3.0e-44	100.00	late embryogenesis abundant protein D-7 [Cucumis sativus] >KGN61545.1 hypothetic...	[more]
KAA0031971.1	5.9e-40	93.75	late embryogenesis abundant protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK...	[more]
XP_008460707.2	5.9e-40	93.75	PREDICTED: late embryogenesis abundant protein 1 isoform X1 [Cucumis melo]	[more]
XP_016902588.1	8.5e-31	86.90	PREDICTED: late embryogenesis abundant protein 1 isoform X2 [Cucumis melo]	[more]
XP_022138744.1	6.1e-21	68.04	late embryogenesis abundant protein 1-like isoform X2 [Momordica charantia]	[more]

BLAST of CSPI02G09830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13560.1	7.5e-09	34.58	Late embryogenesis abundant protein (LEA) family protein	[more]
AT1G52680.1	6.6e-05	34.38	late embryogenesis abundant protein-related / LEA protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	PANTHER	PTHR34191:SF20	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..95
IPR039624	Stress-induced protein KIN1/KIN2	PANTHER	PTHR34191	LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA) FAMILY PROTEIN	coord: 1..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G09830.1	CSPI02G09830.1	mRNA