CSPI02G08500 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G08500
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag-pol polyprotein
LocationChr2: 8041839 .. 8042171 (+)
RNA-Seq ExpressionCSPI02G08500
SyntenyCSPI02G08500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAGGATGAAAAAATAGTTGAACTTAATGTTCGTGTTCTGGACTCATCAAATGCATCTTTTACTCTTGGGGAAAAGCTTTCTAATACAAAATTGGTAAGGAAAGCCTTAAGATCTCTTTCTTCTCAATTTAATATGAAAGTCATTACAATAGAGGAAGCTAATGATATTACTACCATAAGACTTGATAAGTTATTTGGATCTTTAAGAACTTTTGAACTATCTTTTGATGATAATACATCGAAGAAGGAAAGTAGTATTTTGTTCCAAGGTGTAAGTGATGATGCTGCAAATCTATCCAGAAAACAACTCATAATGAGAATCTTGTAG

mRNA sequence

ATGGCTGAGGATGAAAAAATAGTTGAACTTAATGTTCGTGTTCTGGACTCATCAAATGCATCTTTTACTCTTGGGGAAAAGCTTTCTAATACAAAATTGGTAAGGAAAGCCTTAAGATCTCTTTCTTCTCAATTTAATATGAAAGTCATTACAATAGAGGAAGCTAATGATATTACTACCATAAGACTTGATAAGTTATTTGGATCTTTAAGAACTTTTGAACTATCTTTTGATGATAATACATCGAAGAAGGAAAGTAGTATTTTGTTCCAAGGTGTAAGTGATGATGCTGCAAATCTATCCAGAAAACAACTCATAATGAGAATCTTGTAG

Coding sequence (CDS)

ATGGCTGAGGATGAAAAAATAGTTGAACTTAATGTTCGTGTTCTGGACTCATCAAATGCATCTTTTACTCTTGGGGAAAAGCTTTCTAATACAAAATTGGTAAGGAAAGCCTTAAGATCTCTTTCTTCTCAATTTAATATGAAAGTCATTACAATAGAGGAAGCTAATGATATTACTACCATAAGACTTGATAAGTTATTTGGATCTTTAAGAACTTTTGAACTATCTTTTGATGATAATACATCGAAGAAGGAAAGTAGTATTTTGTTCCAAGGTGTAAGTGATGATGCTGCAAATCTATCCAGAAAACAACTCATAATGAGAATCTTGTAG

Protein sequence

MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITTIRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRKQLIMRIL*
Homology
[Close]
BLAST of CSPI02G08500 vs. ExPASy TrEMBL
Match: A0A5A7TXB8 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001800 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.6e-26
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 0 

Query: 1   MAEDEKIVELNVR-VLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDIT 60
           + EDE + E NV  V+D +N SF L EKLSNT LV+K LR+L S+FN+KV  IEEANDIT
Sbjct: 172 IVEDEIVTEFNVLCVMDLANESFALREKLSNTNLVKKVLRTLPSRFNIKVTAIEEANDIT 231

Query: 61  TIRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRKQLIMRI 110
           T++LD+LFGSLRTFELSFD+N +KK+S I FQG SDD    + KQ  MRI
Sbjct: 232 TMKLDELFGSLRTFELSFDNNATKKKSGIAFQGKSDDVTKSNHKQHQMRI 281

[Close]
BLAST of CSPI02G08500 vs. ExPASy TrEMBL
Match: A0A5A7UW05 (Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold542G00160 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 8.6e-25
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE + E NV VLD +N SFTLGEKL++TKLVRK LRSL  + NMKV  IE+AN+I  
Sbjct: 102 MVEDETLAEFNVHVLDLANESFTLGEKLTDTKLVRKVLRSLLPRLNMKVTAIEKANNIIV 161

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRK 104
           +RLD+LFGSLRTF+LS  DN+SKK++++ FQGVS++   L+ K
Sbjct: 162 MRLDELFGSLRTFKLSVKDNSSKKKNNLAFQGVSEETTKLTSK 204

[Close]
BLAST of CSPI02G08500 vs. ExPASy TrEMBL
Match: A0A5D3D7H8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1836G00130 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.5e-24
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE + E NV VLD +N SFTLGEKL++TKLVRK LRSL  + NMKV  IE+AN+I  
Sbjct: 1   MVEDETLAEFNVHVLDLANESFTLGEKLTDTKLVRKVLRSLPPRLNMKVTAIEKANNIIV 60

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRK 104
           +RLD+LF SLRTF+LS +DN+SKK++++ FQGVS++   L+ K
Sbjct: 61  MRLDELFRSLRTFKLSVEDNSSKKKNNLAFQGVSEETTKLTSK 103

[Close]
BLAST of CSPI02G08500 vs. ExPASy TrEMBL
Match: A0A5D3C743 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00320 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.5e-24
Identity = 63/105 (60.00%), Postives = 79/105 (75.24%), Query Frame = 0 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           MAEDE IV  +VRVLD  N S  LG  +SNTKLVRK LRSL S F+MKV+ IEEANDITT
Sbjct: 2   MAEDESIVVFDVRVLDLENESLALGGNISNTKLVRKVLRSLPSCFSMKVVVIEEANDITT 61

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRKQL 106
           ++LD+LFGSLRTFEL  +D   KK+S I  Q ++D+   LS++++
Sbjct: 62  MKLDELFGSLRTFELILEDGKPKKKSGIALQVINDNTPQLSKERI 106

[Close]
BLAST of CSPI02G08500 vs. ExPASy TrEMBL
Match: A0A5D3BLP1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00270 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 0 

Query: 1   MAEDEKIVELNVR-VLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDIT 60
           + EDE + E NV  V+D +N SF L EKL NTKLV+K LR+L+S+FN+KV  IEEANDIT
Sbjct: 139 IVEDEIVTEFNVLCVMDLANESFALREKLFNTKLVKKVLRTLTSRFNIKVTAIEEANDIT 198

Query: 61  TIRLDKLFGSLRTFELSFDDNTSKKESSILFQG 93
           T++LD+LFGSLRTFELSFDDN +KK+S I FQG
Sbjct: 199 TMKLDELFGSLRTFELSFDDNATKKKSGIAFQG 231

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: KAA0046626.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 9.5e-26
Identity = 69/110 (62.73%), Postives = 84/110 (76.36%), Query Frame = 0 

Query: 1   MAEDEKIVELNVR-VLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDIT 60
           + EDE + E NV  V+D +N SF L EKLSNT LV+K LR+L S+FN+KV  IEEANDIT
Sbjct: 172 IVEDEIVTEFNVLCVMDLANESFALREKLSNTNLVKKVLRTLPSRFNIKVTAIEEANDIT 231

Query: 61  TIRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRKQLIMRI 110
           T++LD+LFGSLRTFELSFD+N +KK+S I FQG SDD    + KQ  MRI
Sbjct: 232 TMKLDELFGSLRTFELSFDNNATKKKSGIAFQGKSDDVTKSNHKQHQMRI 281

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: KAA0060153.1 (Receptor-like protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.8e-24
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE + E NV VLD +N SFTLGEKL++TKLVRK LRSL  + NMKV  IE+AN+I  
Sbjct: 102 MVEDETLAEFNVHVLDLANESFTLGEKLTDTKLVRKVLRSLLPRLNMKVTAIEKANNIIV 161

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRK 104
           +RLD+LFGSLRTF+LS  DN+SKK++++ FQGVS++   L+ K
Sbjct: 162 MRLDELFGSLRTFKLSVKDNSSKKKNNLAFQGVSEETTKLTSK 204

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: TYK19518.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-24
Identity = 62/103 (60.19%), Postives = 81/103 (78.64%), Query Frame = 0 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           M EDE + E NV VLD +N SFTLGEKL++TKLVRK LRSL  + NMKV  IE+AN+I  
Sbjct: 1   MVEDETLAEFNVHVLDLANESFTLGEKLTDTKLVRKVLRSLPPRLNMKVTAIEKANNIIV 60

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRK 104
           +RLD+LF SLRTF+LS +DN+SKK++++ FQGVS++   L+ K
Sbjct: 61  MRLDELFRSLRTFKLSVEDNSSKKKNNLAFQGVSEETTKLTSK 103

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: KAA0065593.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07160.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 2.0e-23
Identity = 63/105 (60.00%), Postives = 79/105 (75.24%), Query Frame = 0 

Query: 1   MAEDEKIVELNVRVLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDITT 60
           MAEDE IV  +VRVLD  N S  LG  +SNTKLVRK LRSL S F+MKV+ IEEANDITT
Sbjct: 2   MAEDESIVVFDVRVLDLENESLALGGNISNTKLVRKVLRSLPSCFSMKVVVIEEANDITT 61

Query: 61  IRLDKLFGSLRTFELSFDDNTSKKESSILFQGVSDDAANLSRKQL 106
           ++LD+LFGSLRTFEL  +D   KK+S I  Q ++D+   LS++++
Sbjct: 62  MKLDELFGSLRTFELILEDGKPKKKSGIALQVINDNTPQLSKERI 106

[Close]
BLAST of CSPI02G08500 vs. NCBI nr
Match: TYK00077.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 7.5e-23
Identity = 62/93 (66.67%), Postives = 76/93 (81.72%), Query Frame = 0 

Query: 1   MAEDEKIVELNVR-VLDSSNASFTLGEKLSNTKLVRKALRSLSSQFNMKVITIEEANDIT 60
           + EDE + E NV  V+D +N SF L EKL NTKLV+K LR+L+S+FN+KV  IEEANDIT
Sbjct: 139 IVEDEIVTEFNVLCVMDLANESFALREKLFNTKLVKKVLRTLTSRFNIKVTAIEEANDIT 198

Query: 61  TIRLDKLFGSLRTFELSFDDNTSKKESSILFQG 93
           T++LD+LFGSLRTFELSFDDN +KK+S I FQG
Sbjct: 199 TMKLDELFGSLRTFELSFDDNATKKKSGIAFQG 231

The following BLAST results are available for this feature:
BLAST of CSPI02G08500 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G08500 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TXB84.6e-2662.73Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
A0A5A7UW058.6e-2561.17Receptor-like protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3D7H82.5e-2460.19Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1836... [more]
A0A5D3C7439.5e-2460.00Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G... [more]
A0A5D3BLP13.6e-2366.67Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G... [more]
BLAST of CSPI02G08500 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0046626.19.5e-2662.73gag-proteinase polyprotein [Cucumis melo var. makuwa][more]
KAA0060153.11.8e-2461.17Receptor-like protein 12 [Cucumis melo var. makuwa][more]
TYK19518.15.2e-2460.19gag-pol polyprotein [Cucumis melo var. makuwa][more]
KAA0065593.12.0e-2360.00gag-pol polyprotein [Cucumis melo var. makuwa] >TYK07160.1 gag-pol polyprotein [... [more]
TYK00077.17.5e-2366.67gag-pol polyprotein [Cucumis melo var. makuwa][more]
BLAST of CSPI02G08500 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G08500.1CSPI02G08500.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane