CSPI02G07950 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G07950
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Plant transposase
Location	Chr2: 7282468 .. 7282740 (-)
RNA-Seq Expression	CSPI02G07950
Synteny	CSPI02G07950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTTAACTCGACCTAGTAGCGATGATGGTGAGAACGAGGGAGAAGTGATGATGAGAATTGTAAATGATATAAATAATGTTGCCAACTCTAGTACAGAGAGAGAGATTAGGGAAACATCACCTTATTTCGACCCACTTCACCACAATAACATGGATTGTGAGGAAGCTATTACTCCACTTCCATCTGCACATGTCAATATTATGATTCATCCTCAGTCTAAACGACCACAAAATAGGCCATTAGACTCACCCGCTGCTCGTACTAGATAA

mRNA sequence

ATGGACTTAACTCGACCTAGTAGCGATGATGGTGAGAACGAGGGAGAAGTGATGATGAGAATTGTAAATGATATAAATAATGTTGCCAACTCTAGTACAGAGAGAGAGATTAGGGAAACATCACCTTATTTCGACCCACTTCACCACAATAACATGGATTGTGAGGAAGCTATTACTCCACTTCCATCTGCACATGTCAATATTATGATTCATCCTCAGTCTAAACGACCACAAAATAGGCCATTAGACTCACCCGCTGCTCGTACTAGATAA

Coding sequence (CDS)

ATGGACTTAACTCGACCTAGTAGCGATGATGGTGAGAACGAGGGAGAAGTGATGATGAGAATTGTAAATGATATAAATAATGTTGCCAACTCTAGTACAGAGAGAGAGATTAGGGAAACATCACCTTATTTCGACCCACTTCACCACAATAACATGGATTGTGAGGAAGCTATTACTCCACTTCCATCTGCACATGTCAATATTATGATTCATCCTCAGTCTAAACGACCACAAAATAGGCCATTAGACTCACCCGCTGCTCGTACTAGATAA

Protein sequence

MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITPLPSAHVNIMIHPQSKRPQNRPLDSPAARTR*

Homology

[Close]

BLAST of CSPI02G07950 vs. ExPASy TrEMBL
Match: A0A0A0LMZ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.3e-22
Identity = 53/57 (92.98%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 34 EREIRETSPYFDPLHHNNMDCEEAITPLPSAHVNIMIHPQSKRPQNRPLDSPAARTR 91
          EREIRETSPY DPLHHNNMD EEA TPLPS HVNIMIHPQSKRPQNRPLDSPAARTR
Sbjct: 9  EREIRETSPYSDPLHHNNMDFEEATTPLPSTHVNIMIHPQSKRPQNRPLDSPAARTR 65

[Close]

BLAST of CSPI02G07950 vs. ExPASy TrEMBL
Match: A0A5A7UMZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G00100 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.8e-19
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MD+T+P  DD ENEGEV+               EREIRETS   DPLHH+N+DCEE  TP
Sbjct: 1  MDVTQPGIDDEENEGEVL------------HLKEREIRETSTLPDPLHHSNVDCEEVATP 60

Query: 61 LPSAHVNIMIHPQSKRPQNRPLDS 85
           PS+HVN +IHPQSKRPQNRPLDS
Sbjct: 61 FPSSHVNAIIHPQSKRPQNRPLDS 72

[Close]

BLAST of CSPI02G07950 vs. ExPASy TrEMBL
Match: A0A0A0K715 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MDLT+PSSDD  NE E MMRIVND +NVAN S EREIRETSPY DPLHHNN++ EEA TP
Sbjct: 1  MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 60

Query: 61 LPSAHV 67
          LPS+ V
Sbjct: 61 LPSSQV 66

[Close]

BLAST of CSPI02G07950 vs. ExPASy TrEMBL
Match: A0A5A7UI65 (Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11091G00020 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-16
Identity = 52/90 (57.78%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MDLT+ S+DD ENEGE ++              E+EIRETSP  DPL       EEA TP
Sbjct: 1  MDLTQSSTDDEENEGEALL------------LREKEIRETSPLLDPL------SEEATTP 60

Query: 61 LPSAHVNIMIHPQSKRPQNRPLDSPAARTR 91
          LPS+HVN  IHPQS+RP NRPLDSPA RTR
Sbjct: 61 LPSSHVNATIHPQSRRPPNRPLDSPAGRTR 72

[Close]

BLAST of CSPI02G07950 vs. ExPASy TrEMBL
Match: A0A5A7UNU1 (Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold226G00350 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-16
Identity = 53/90 (58.89%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MDLT+PS+DD ENEGE +               E+EIRETSP  DPL       EEA TP
Sbjct: 1  MDLTQPSTDDEENEGEAL------------HLREKEIRETSPLPDPL------LEEATTP 60

Query: 61 LPSAHVNIMIHPQSKRPQNRPLDSPAARTR 91
          LPS+HVN  IHPQS+RP NRPLDSPA RTR
Sbjct: 61 LPSSHVNATIHPQSRRPPNRPLDSPAGRTR 72

[Close]

BLAST of CSPI02G07950 vs. NCBI nr
Match: KAA0055646.1 (hypothetical protein E6C27_scaffold181G00110 [Cucumis melo var. makuwa] >TYK09900.1 hypothetical protein E5676_scaffold16G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 52/84 (61.90%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MD+T+P  DD ENEGEV+               EREIRETS   DPLHH+N+DCEE  TP
Sbjct: 1  MDVTQPGIDDEENEGEVL------------HLKEREIRETSTLPDPLHHSNVDCEEVATP 60

Query: 61 LPSAHVNIMIHPQSKRPQNRPLDS 85
           PS+HVN +IHPQSKRPQNRPLDS
Sbjct: 61 FPSSHVNAIIHPQSKRPQNRPLDS 72

[Close]

BLAST of CSPI02G07950 vs. NCBI nr
Match: KGN44082.1 (hypothetical protein Csa_016717 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 4.6e-18
Identity = 50/66 (75.76%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MDLT+PSSDD  NE E MMRIVND +NVAN S EREIRETSPY DPLHHNN++ EEA TP
Sbjct: 1  MDLTQPSSDDEANEEEAMMRIVNDRDNVANPSIEREIRETSPYLDPLHHNNVNYEEATTP 60

Query: 61 LPSAHV 67
          LPS+ V
Sbjct: 61 LPSSQV 66

[Close]

BLAST of CSPI02G07950 vs. NCBI nr
Match: KAA0056267.1 (uncharacterized protein E6C27_scaffold226G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 53/90 (58.89%), Postives = 59/90 (65.56%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MDLT+PS+DD ENEGE +               E+EIRETSP  DPL       EEA TP
Sbjct: 1  MDLTQPSTDDEENEGEAL------------HLREKEIRETSPLPDPL------LEEATTP 60

Query: 61 LPSAHVNIMIHPQSKRPQNRPLDSPAARTR 91
          LPS+HVN  IHPQS+RP NRPLDSPA RTR
Sbjct: 61 LPSSHVNATIHPQSRRPPNRPLDSPAGRTR 72

[Close]

BLAST of CSPI02G07950 vs. NCBI nr
Match: TYK17066.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MDLT+PSSDD +N+GE +               EREIRE SP  DPLH +N+DCEEA TP
Sbjct: 1  MDLTQPSSDDEKNKGEAL------------HLREREIREISPLPDPLHQSNVDCEEATTP 60

Query: 61 LPSAHVNIMIHPQSKRPQNRPLDSPAARTR 91
            S+HVN  IHPQ++RPQNR L+S   RTR
Sbjct: 61 SLSSHVNATIHPQARRPQNRSLNSLVGRTR 78

[Close]

BLAST of CSPI02G07950 vs. NCBI nr
Match: KAA0032260.1 (Plant transposase [Cucumis melo var. makuwa])

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 50/90 (55.56%), Postives = 60/90 (66.67%), Query Frame = 0


Query: 1  MDLTRPSSDDGENEGEVMMRIVNDINNVANSSTEREIRETSPYFDPLHHNNMDCEEAITP 60
          MDLT+PSSDD +N+GE +               EREIRE SP  DPLH +N+DCEEA TP
Sbjct: 1  MDLTQPSSDDEKNKGEAL------------HLREREIREISPLPDPLHQSNVDCEEATTP 60

Query: 61 LPSAHVNIMIHPQSKRPQNRPLDSPAARTR 91
            S+HVN  IHPQ++RPQNR L+S   RTR
Sbjct: 61 SLSSHVNATIHPQARRPQNRSLNSLVGRTR 78

The following BLAST results are available for this feature:

BLAST of CSPI02G07950 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G07950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMZ0	7.3e-22	92.98	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G093830 PE=4 SV=1	[more]
A0A5A7UMZ2	5.8e-19	61.90	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K715	2.2e-18	75.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G176610 PE=4 SV=1	[more]
A0A5A7UI65	2.7e-16	57.78	Plant transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold11091G...	[more]
A0A5A7UNU1	2.7e-16	58.89	Transposase_23 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of CSPI02G07950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055646.1	1.2e-18	61.90	hypothetical protein E6C27_scaffold181G00110 [Cucumis melo var. makuwa] >TYK0990...	[more]
KGN44082.1	4.6e-18	75.76	hypothetical protein Csa_016717 [Cucumis sativus]	[more]
KAA0056267.1	5.6e-16	58.89	uncharacterized protein E6C27_scaffold226G00350 [Cucumis melo var. makuwa]	[more]
TYK17066.1	5.6e-16	55.56	Plant transposase [Cucumis melo var. makuwa]	[more]
KAA0032260.1	5.6e-16	55.56	Plant transposase [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G07950 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G07950.1	CSPI02G07950.1	mRNA