CSPI02G07590 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G07590
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 6558695 .. 6559254 (+)
RNA-Seq ExpressionCSPI02G07590
SyntenyCSPI02G07590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGAAATCTAATGGGGCGGTGAAGGACTCCACAGAACCGGCAGCAGCACATATGGAAGTTAATTCGACAGTTATGAATTTAGGGCATCCACACGAAAAAAAAAAGGAAAGTCATCTACTGTTTCCTTACTAAACCAGCCAATTTACTCACATTCCCCTGATTCTCAGCCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAATAATTCTTCTCATGACACATTTCCCTCCCATACACCCGCATTGACCTTTCATAATATCCTCTTGGGCCCCACACAATCCCCTTCACCTTCTTTTAATCAGCCATCAATGGCAATGGTTACTTTTCAAAATGGTTTTTCCAACTTGCGGGAAGGACCAAAACACATGGCAACTCCTAAAAATCAGCCACAAACATTCTCTGACTTGGAAGCCTACCTTACCAGCCCATCTCTCAAAAAGACGACTTTGTCACTCATACGTCGGAAGAAGCTGTTTTGGGGGAAATCCCAAAGAATCAAATCTCCCACTTACTATCCTACCCTAGTCCCAACTGATTTGCACAGTTAA

mRNA sequence

ATGGCGGCGAAATCTAATGGGGCGGTGAAGGACTCCACAGAACCGGCAGCAGCACATATGGAACCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAATAATTCTTCTCATGACACATTTCCCTCCCATACACCCGCATTGACCTTTCATAATATCCTCTTGGGCCCCACACAATCCCCTTCACCTTCTTTTAATCAGCCATCAATGGCAATGGTTACTTTTCAAAATGGTTTTTCCAACTTGCGGGAAGGACCAAAACACATGGCAACTCCTAAAAATCAGCCACAAACATTCTCTGACTTGGAAGCCTACCTTACCAGCCCATCTCTCAAAAAGACGACTTTGTCACTCATACGTCGGAAGAAGCTGTTTTGGGGGAAATCCCAAAGAATCAAATCTCCCACTTACTATCCTACCCTAGTCCCAACTGATTTGCACAGTTAA

Coding sequence (CDS)

ATGGCGGCGAAATCTAATGGGGCGGTGAAGGACTCCACAGAACCGGCAGCAGCACATATGGAACCATTTGAACTTTCAACAGATTTTCCTAATCTGGTGGAAAATAATTCTTCTCATGACACATTTCCCTCCCATACACCCGCATTGACCTTTCATAATATCCTCTTGGGCCCCACACAATCCCCTTCACCTTCTTTTAATCAGCCATCAATGGCAATGGTTACTTTTCAAAATGGTTTTTCCAACTTGCGGGAAGGACCAAAACACATGGCAACTCCTAAAAATCAGCCACAAACATTCTCTGACTTGGAAGCCTACCTTACCAGCCCATCTCTCAAAAAGACGACTTTGTCACTCATACGTCGGAAGAAGCTGTTTTGGGGGAAATCCCAAAGAATCAAATCTCCCACTTACTATCCTACCCTAGTCCCAACTGATTTGCACAGTTAA

Protein sequence

MAAKSNGAVKDSTEPAAAHMEPFELSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPTQSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSPSLKKTTLSLIRRKKLFWGKSQRIKSPTYYPTLVPTDLHS*
Homology
BLAST of CSPI02G07590 vs. ExPASy TrEMBL
Match: A0A0A0LHM7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.4e-75
Identity = 146/159 (91.82%), Postives = 147/159 (92.45%), Query Frame = 0

Query: 1   MAAKSNGAVKDSTEPAAAHME----------PFELSTDFPNLVENNSSHDTFPSHTPALT 60
           MAAKSNG VKDSTEPAAAHME          PFELSTDFPNLVENNSSHDTFPSHTPALT
Sbjct: 1   MAAKSNGVVKDSTEPAAAHMEPIYSHSPDSQPFELSTDFPNLVENNSSHDTFPSHTPALT 60

Query: 61  FHNILLGPTQSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP 120
           FHNILLGPT+SPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP
Sbjct: 61  FHNILLGPTKSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSP 120

Query: 121 SLKKTTLSLIRRKKLFWGKSQRIKSPTYYPTLVPTDLHS 150
           SLKKTTLSLIR KKLFWGKSQRIKSPTYYPTLVPTDLHS
Sbjct: 121 SLKKTTLSLIRWKKLFWGKSQRIKSPTYYPTLVPTDLHS 159

BLAST of CSPI02G07590 vs. ExPASy TrEMBL
Match: A0A0A0KPT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314850 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 78/163 (47.85%), Postives = 97/163 (59.51%), Query Frame = 0

Query: 2   AAKSNGAVKDSTEPAAAHM--------------EPFELSTDFPNLVENNSSHDTFPSHTP 61
           AA ++  V++ST PAAA M                FE S +FPN V  N   +  PSH+P
Sbjct: 188 AADTHAVVRESTLPAAASMGIKSALTHQKSRDSRQFEFSANFPNPVAINIPCEQIPSHSP 247

Query: 62  ALTFHNILLGPTQSPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYL 121
           AL + N L+GPT+S SPSFNQPS+AMVTFQ   SNLREG KH+ATP+NQ QTFSD EA L
Sbjct: 248 ALPYPNTLVGPTKSSSPSFNQPSLAMVTFQADSSNLREGTKHVATPENQLQTFSDSEADL 307

Query: 122 TSPSLKKTTLSLIRRKKLFW-GKSQRIKSPTYYPTLVPTDLHS 150
           T+ S K    +      +F    ++   S T  P  VPTDLH+
Sbjct: 308 TALSPKDDFATHSWEDAVFGENPTESNLSITILPP-VPTDLHN 349

BLAST of CSPI02G07590 vs. ExPASy TrEMBL
Match: A0A5D3DUB2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00040 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 3.2e-14
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = 0

Query: 1   MAAKSNGAVKDSTEPAAAHMEPFELSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPTQ 60
           MAAKSNGAVKDS+E AAAH++     T+  +         T       +  H+    P +
Sbjct: 100 MAAKSNGAVKDSSELAAAHIKFNSAVTNLGHPTRQKKKSPTVSLLNQPVYSHSPDSQPFE 159

Query: 61  SPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSPSL 113
             +   N PSMAMVTFQNGFS+L+EG +HMATP NQPQTFSD+ + L    L
Sbjct: 160 LSTDFPNLPSMAMVTFQNGFSDLQEGSRHMATPTNQPQTFSDMASILLQHGL 211

BLAST of CSPI02G07590 vs. NCBI nr
Match: KAE8648340.1 (hypothetical protein Csa_023105, partial [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-21
Identity = 68/128 (53.12%), Postives = 83/128 (64.84%), Query Frame = 0

Query: 23  FELSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPTQSPSPSFNQPSMAMVTFQNGFSN 82
           FE S +FPN V  N   +  PSH+PAL + N L+GPT+S SPSFNQPS+AMVTFQ   SN
Sbjct: 155 FEFSANFPNPVAINIPCEQIPSHSPALPYPNTLVGPTKSSSPSFNQPSLAMVTFQADSSN 214

Query: 83  LREGPKHMATPKNQPQTFSDLEAYLTSPSLKKTTLSLIRRKKLFW-GKSQRIKSPTYYPT 142
           LREG KH+ATP+NQ QTFSD EA LT+ S K    +      +F    ++   S T  P 
Sbjct: 215 LREGTKHVATPENQLQTFSDSEADLTALSPKDDFATHSWEDAVFGENPTESNLSITILPP 274

Query: 143 LVPTDLHS 150
            VPTDLH+
Sbjct: 275 -VPTDLHN 281

BLAST of CSPI02G07590 vs. NCBI nr
Match: TYK27243.1 (hypothetical protein E5676_scaffold244G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 6.6e-14
Identity = 53/112 (47.32%), Postives = 67/112 (59.82%), Query Frame = 0

Query: 1   MAAKSNGAVKDSTEPAAAHMEPFELSTDFPNLVENNSSHDTFPSHTPALTFHNILLGPTQ 60
           MAAKSNGAVKDS+E AAAH++     T+  +         T       +  H+    P +
Sbjct: 100 MAAKSNGAVKDSSELAAAHIKFNSAVTNLGHPTRQKKKSPTVSLLNQPVYSHSPDSQPFE 159

Query: 61  SPSPSFNQPSMAMVTFQNGFSNLREGPKHMATPKNQPQTFSDLEAYLTSPSL 113
             +   N PSMAMVTFQNGFS+L+EG +HMATP NQPQTFSD+ + L    L
Sbjct: 160 LSTDFPNLPSMAMVTFQNGFSDLQEGSRHMATPTNQPQTFSDMASILLQHGL 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LHM79.4e-7591.82Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G078070 PE=4 SV=1[more]
A0A0A0KPT11.7e-2347.85Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314850 PE=4 SV=1[more]
A0A5D3DUB23.2e-1447.32Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAE8648340.11.9e-2153.13hypothetical protein Csa_023105, partial [Cucumis sativus][more]
TYK27243.16.6e-1447.32hypothetical protein E5676_scaffold244G00040 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G07590.1CSPI02G07590.1mRNA