CSPI02G06630 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G06630
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DExH-box ATP-dependent RNA helicase DExH10
Location	Chr2: 5445611 .. 5447595 (+)
RNA-Seq Expression	CSPI02G06630
Synteny	CSPI02G06630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGAAAATCGAAAACTCATTTTGCTTGAAACTGTATTTCTCTAGCATTACTTTTCTATGCAGTGCATGTTCTAAATGGTTTCTTTCACTAAGAAGGACTAAATAACATACTACATTCTAAAGTAAAGTTCCTCAAATTTGCCAGTATCATGATCCGGGTGCTGAACTTTTATGTTCCTGGTTTTACATTGTAATAATGACTTTCTTGATACAGGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGGTGCAGACGAATAACATATAGATTTACATATTTTCTGTCTTACTCTTGGTTGAAACCCTGAACCTGTTTCAGTTTTCAAAGACCTAGGAAAGTCATGTTTGGATTTTATATATTTGTCACAGAAATAAAGAAGCTTGGGCTTTTGGGATCCCCGAATAATAGGGTTTATGCTTCTTTTTCTATGGGATTCCTCTATCATGTTCAGGCTCTTTATTATTACTTTTTTAATTCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAAACTTAGAGAGCAAGTTTTCTGCAGCCAGTGAAAGCCTTCGCAGAGGTATAATGTTCGCAAACTCACTCTATTTGTAGATTGTCCCCTGCTTTGGTTGCATCTTCAGGGGTTCATGAAGCTCTGAGATTGTGGTTTTCACCAACCATTTTTCATAGAGGTATTTTCTCTATTTTCCATGTTTAAGATGTACTGGAATACAAATTTTTGGATATTTTAGCATAAACTAGAAAGAACATATATCACAATCTGAGAGGCTAACCATAAAACACTAACAAAACTGTGAGTGTAAATGTTTCACAATTTTTAGTCTGTTTCCTTAGACATAGCAGCAGCTTGTTTAGTGAAATTTTGAACTTTAATGTCTGCATTACTTCTCCATATTTGGAGAAAAATTGTAAGTTTATCTGTCCTAGTGGAAATATATTTCTTAAATCCTTGGTTTATTTATTTTCCGATGATTTATGGAAAATTAGCCACGTGGTTGAATGATTGGAAATTAGTGGAGTTGCACATTTTCAAACTAAATTTTGTGGGGGAGTTGAGATTTTTATTGGAGAAAATTGAGGACTGAAACTTGTGGCCACTTTGAATCTGCTTTTTGTGTTTCTGGGGTCCCTCCTTTTCCACTTGCAATTATGCACTCTTAATATAAATAGTGTAGGACTTCAATAGTCGGCAGTTGGCACAACAGTTTCTCTTGAGCGAAATTACATGGTTTCTGCAATGCTCCTTTTGAGTATCCTTATATTGCATTGGGCCCTTTTGTAAATTCGCACACTTAATTGGTTGGCAGAAGATGAATCTTCTTGACAATTTTTATGTACTCCCTTTTTTTATACCAAATCTTTGTAACTTACAGAAAAAATGTATCAATCATCACATGTTCATTAAGAAAAGTGAAATGATCTATATGTTAAGTTTCATATTTACATGCAGGAAGAATAAAATAAATGACTAAATTCATGTCAACAAATTACTGGAAACTTTTTCTTTCAATTGTGTATTTCATTGATGGTAAGAAAATACTAGGAGTTGGGGTTCTTTACATTAAGAAGGTCCTATCAAAGACGGATATTGAGTTGGTGGTAATTTAAAACAAGGAGGGACTATACCCTCGGCAGGTCTTGAACGGAGCATGTAATTACTAACATTTGTTTTTCTAATTAATGCATATTAGATTTTTTTACTACTACTTTTATTTAGTTCATTTGCAATGTTTGCTAGCTTTTAGGTTAAGCTTGTCTTACCTTTTATACTCGACTTAGATGGTTAACAAAATCTGTAACTTATTGATTTCTGTCATTTATATTTCTTAGTGTAGGGGTTCATCGTGAACTCTAGAAGTGAGATATTTTACTCTTTTACTGCAATAGTTCCCAAGGGAGAAACAAAAGAACCTACAAAATAA

mRNA sequence

ATGTGGGAAAATCGAAAACTCATTTTGCTTGAAACTGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAAACTTAGAGAGCAAGTTTTCTGCAGCCAGTGAAAGCCTTCGCAGAGGAGTTGGGGTTCTTTACATTAAGAAGGTCCTATCAAAGACGGATATTGAGTTGGTGGGGTTCATCGTGAACTCTAGAAGTGAGATATTTTACTCTTTTACTGCAATAGTTCCCAAGGGAGAAACAAAAGAACCTACAAAATAA

Coding sequence (CDS)

ATGTGGGAAAATCGAAAACTCATTTTGCTTGAAACTGGAGCAAGTTTCTCAGAGGTGATTCAAATGACAGATATTTTCGAGGGTAGCATCATTCGAAGTGCTAGACGGCTTGATGAATTCTTGAATCAGTTGCGTGCTGCTGCCAATGCTGTGGGGGAGGTAAACTTAGAGAGCAAGTTTTCTGCAGCCAGTGAAAGCCTTCGCAGAGGAGTTGGGGTTCTTTACATTAAGAAGGTCCTATCAAAGACGGATATTGAGTTGGTGGGGTTCATCGTGAACTCTAGAAGTGAGATATTTTACTCTTTTACTGCAATAGTTCCCAAGGGAGAAACAAAAGAACCTACAAAATAA

Protein sequence

MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGVGVLYIKKVLSKTDIELVGFIVNSRSEIFYSFTAIVPKGETKEPTK*

Homology

[Close]

BLAST of CSPI02G06630 vs. ExPASy Swiss-Prot
Match: Q9ZVW2 (DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana OX=3702 GN=HEN2 PE=1 SV=2)

HSP 1 Score: 101.7 bits (252), Expect = 5.9e-21
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           GASF+E+IQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AASESLRRG+
Sbjct: 929 GASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESKFAAASESLRRGI 987

[Close]

BLAST of CSPI02G06630 vs. ExPASy Swiss-Prot
Match: P42285 (Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 12   TGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 71
            TGA+F+ + +MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R +
Sbjct: 975  TGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDI 1034

[Close]

BLAST of CSPI02G06630 vs. ExPASy Swiss-Prot
Match: Q9CZU3 (Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 29/60 (48.33%), Postives = 42/60 (70.00%), Query Frame = 0


Query: 12   TGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 71
            TGA+F+ + +MTD+FEGSIIR  RRL+E L Q+  AA A+G   LE+KF+     ++R +
Sbjct: 973  TGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDI 1032

[Close]

BLAST of CSPI02G06630 vs. ExPASy Swiss-Prot
Match: Q23223 (mRNA transport homolog 4 OS=Caenorhabditis elegans OX=6239 GN=mtr-4 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-09
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 13   GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
            GA+FSE+++ TD+FEGSIIR+ RRL+E L ++  AA A+    LE KF  A ++L+R +
Sbjct: 960  GATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFEDARKNLKRDI 1018

[Close]

BLAST of CSPI02G06630 vs. ExPASy Swiss-Prot
Match: Q9XIF2 (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR4 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.7e-07
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           G+ F EV+++  +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R +
Sbjct: 922 GSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSKIKRDI 980

[Close]

BLAST of CSPI02G06630 vs. ExPASy TrEMBL
Match: A0A0A0LHE5 (DSHCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G068690 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF 60
          MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF
Sbjct: 1  MWENRKLILLETGASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF 60

Query: 61 SAASESLRRGV 72
          SAASESLRRG+
Sbjct: 61 SAASESLRRGI 71

[Close]

BLAST of CSPI02G06630 vs. ExPASy TrEMBL
Match: A0A1S3BQY6 (DExH-box ATP-dependent RNA helicase DExH10 OS=Cucumis melo OX=3656 GN=LOC103492231 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.0e-21
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13   GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
            GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAAS+SLRRG+
Sbjct: 948  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASDSLRRGI 1006

[Close]

BLAST of CSPI02G06630 vs. ExPASy TrEMBL
Match: A0A7J7BVL7 (DSHCT domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW23G00673 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           GASF++VIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF+AASESLRRG+
Sbjct: 139 GASFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFAAASESLRRGI 197

[Close]

BLAST of CSPI02G06630 vs. ExPASy TrEMBL
Match: A0A6N2KIM0 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS93628 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           GASFSE+IQMTDIFEGSIIRSARRLDEFLNQLRAAA+AVGEVNLESKF+AASESLRRG+
Sbjct: 932 GASFSEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAHAVGEVNLESKFAAASESLRRGI 990

[Close]

BLAST of CSPI02G06630 vs. ExPASy TrEMBL
Match: A0A6J1K235 (DExH-box ATP-dependent RNA helicase DExH10 OS=Cucurbita maxima OX=3661 GN=LOC111491727 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-20
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 13   GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
            GASFSEVIQMTD+FEGSIIRSARRLDEFLNQLRAAANAVGEV LESKFSAAS+SLRRG+
Sbjct: 948  GASFSEVIQMTDVFEGSIIRSARRLDEFLNQLRAAANAVGEVTLESKFSAASDSLRRGI 1006

[Close]

BLAST of CSPI02G06630 vs. NCBI nr
Match: XP_004152892.1 (DExH-box ATP-dependent RNA helicase DExH10 [Cucumis sativus] >KAE8651687.1 hypothetical protein Csa_006005 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 7.4e-21
Identity = 58/59 (98.31%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13   GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
            GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRG+
Sbjct: 948  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGI 1006

[Close]

BLAST of CSPI02G06630 vs. NCBI nr
Match: XP_008450745.1 (PREDICTED: DExH-box ATP-dependent RNA helicase DExH10 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 57/59 (96.61%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13   GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
            GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAAS+SLRRG+
Sbjct: 948  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASDSLRRGI 1006

[Close]

BLAST of CSPI02G06630 vs. NCBI nr
Match: XP_038696167.1 (DExH-box ATP-dependent RNA helicase DExH10 isoform X1 [Tripterygium wilfordii])

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-20
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           GASF++VIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF+AASESLRRG+
Sbjct: 924 GASFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFAAASESLRRGI 982

[Close]

BLAST of CSPI02G06630 vs. NCBI nr
Match: KAG5242910.1 (superkiller viralicidic [Salix suchowensis])

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-20
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           GASFSE+IQMTDIFEGSIIRSARRLDEFLNQLRAAA+AVGEVNLESKF+AASESLRRG+
Sbjct: 932 GASFSEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAHAVGEVNLESKFAAASESLRRGI 990

[Close]

BLAST of CSPI02G06630 vs. NCBI nr
Match: KAF5725940.1 (hypothetical protein HS088_TW23G00673 [Tripterygium wilfordii])

HSP 1 Score: 107.5 bits (267), Expect = 8.2e-20
Identity = 55/59 (93.22%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           GASF++VIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKF+AASESLRRG+
Sbjct: 139 GASFADVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFAAASESLRRGI 197

[Close]

BLAST of CSPI02G06630 vs. TAIR 10
Match: AT2G06990.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 101.7 bits (252), Expect = 4.2e-22
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           GASF+E+IQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGE +LESKF+AASESLRRG+
Sbjct: 929 GASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESKFAAASESLRRGI 987

[Close]

BLAST of CSPI02G06630 vs. TAIR 10
Match: AT1G59760.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-08
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 13  GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNLESKFSAASESLRRGV 72
           G+ F EV+++  +FEGS+IR+ RR++E L QL  AA ++GE  LE+K   A   ++R +
Sbjct: 922 GSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSKIKRDI 980

[Close]

BLAST of CSPI02G06630 vs. TAIR 10
Match: AT3G46960.1 (RNA helicase, ATP-dependent, SK12/DOB1 protein )

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-06
Identity = 27/75 (36.00%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 3    ENRKLILLET------GASFSEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEVNL 62
            EN K  L+E       G  F+E+ ++TD+ EG I+R+  RLDE   + + AA  +G   L
Sbjct: 1262 ENLKFGLVEVVYEWAKGTPFAEICELTDVPEGLIVRTIVRLDETCREFKNAAAIMGNSAL 1321

Query: 63   ESKFSAASESLRRGV 72
              K  AAS +++R +
Sbjct: 1322 HKKMDAASNAIKRDI 1336

The following BLAST results are available for this feature:

BLAST of CSPI02G06630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVW2	5.9e-21	88.14	DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana OX=3702 GN=HE...	[more]
P42285	1.8e-09	48.33	Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3	[more]
Q9CZU3	1.8e-09	48.33	Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1	[more]
Q23223	6.7e-09	49.15	mRNA transport homolog 4 OS=Caenorhabditis elegans OX=6239 GN=mtr-4 PE=3 SV=1	[more]
Q9XIF2	3.7e-07	42.37	DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR...	[more]

BLAST of CSPI02G06630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHE5	1.8e-28	98.59	DSHCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G068690 PE=4 ...	[more]
A0A1S3BQY6	8.0e-21	96.61	DExH-box ATP-dependent RNA helicase DExH10 OS=Cucumis melo OX=3656 GN=LOC1034922...	[more]
A0A7J7BVL7	4.0e-20	93.22	DSHCT domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW2...	[more]
A0A6N2KIM0	4.0e-20	93.22	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS93628 PE=4 SV=1	[more]
A0A6J1K235	5.2e-20	93.22	DExH-box ATP-dependent RNA helicase DExH10 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CSPI02G06630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152892.1	7.4e-21	98.31	DExH-box ATP-dependent RNA helicase DExH10 [Cucumis sativus] >KAE8651687.1 hypot...	[more]
XP_008450745.1	1.6e-20	96.61	PREDICTED: DExH-box ATP-dependent RNA helicase DExH10 [Cucumis melo]	[more]
XP_038696167.1	8.2e-20	93.22	DExH-box ATP-dependent RNA helicase DExH10 isoform X1 [Tripterygium wilfordii]	[more]
KAG5242910.1	8.2e-20	93.22	superkiller viralicidic [Salix suchowensis]	[more]
KAF5725940.1	8.2e-20	93.22	hypothetical protein HS088_TW23G00673 [Tripterygium wilfordii]	[more]

BLAST of CSPI02G06630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06990.1	4.2e-22	88.14	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT1G59760.1	2.6e-08	42.37	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]
AT3G46960.1	7.2e-06	36.00	RNA helicase, ATP-dependent, SK12/DOB1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal	SMART	SM01142	DSHCT_2	coord: 1..76 e-value: 1.7E-7 score: 16.6
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal	PFAM	PF08148	DSHCT	coord: 13..71 e-value: 1.2E-16 score: 60.8
None	No IPR available	GENE3D	1.10.3380.30		coord: 11..76 e-value: 4.9E-19 score: 70.5
None	No IPR available	PANTHER	PTHR47961	DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED	coord: 13..71
None	No IPR available	PANTHER	PTHR47961:SF2	DEAD/DEAH BOX HELICASE FAMILY PROTEIN, EXPRESSED	coord: 13..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G06630.1	CSPI02G06630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity