CSPI02G06270 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G06270
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal_S5_C domain-containing protein
LocationChr2: 4831468 .. 4834459 (+)
RNA-Seq ExpressionCSPI02G06270
SyntenyCSPI02G06270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGGACGCCGTCGTGTTAGCCGCCGTGATGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTATTCGTGGCCGTGGAGAAGTGGCTTCCAGTCGTGCTGGTCGCCGTGACTAAGAGGAGACTATGGACGCGGCTGCTATTCGTGGCTTGATTATTTTGTCTAAGTTGTCGGTGATCCCTGTTAGGAGGGGATATTGAGGTAACAAGATTGGCAGTCGCGCGAGCCACGTATAATCCCTGTTATTCCGGTGACCTCGCCGTCCGTATGGTTCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTGGGGTTCCCAAGAAGGTGCTTCAATTCGCTGGTATTGAGAATGTTTCCACTTCCTCAAAGGGGATCCACTAAGGCGCTTGGAAACTTTGTGAAGGTATATAATTGTAATATGATGCAATATCAATATCATATGTCCACTGACATTTATTGTGTATAATATCAGTATAATGTGTTGTGCTATGTCATTTGGGGCATTCTGAATTCAGATTTGTACTTAGGCTCGGCTTGTAAAATTTTGAATAGCCGTCTATTCGTGGTTGATTATGCATATTGGGCTTTGTTTTTTCTGGATTTTTCTGTTTGTGTGTACATCCATTTTGTGGAATTGATTTATGTTTTGTTTTTTGGAACATGGACCCTCCATTCCTATGATCTGTAGCATTTTCTATACGATATTAAAAATGCTCCAGGTTCTTTTAATTTGAGTATGCCACACATGTACGTGTAGGTGGACTCTTACTAATATGTATAAATTATCACTAATGTCATGCTTTAAAAAATCTGAACTTGATTTTGATCTTAAACCTGTTTTTTGTTTACTATCCATTGCAGACATTCGGATTTGAAGGTGATGTTCGTAAGAAGATGCAAGTAGTGTAGTGGAGTCTGCTTTCAGTAATCTTGGTAGTCTGGACATTCTTGTAGCAGCTTGGGAACTTTTTGGTATCAACAGAAGATTTGTCTACGAAATGGATTTCGAACAGGTTCTGTTCTATTGCTACTTTCAATAATCATGGTAGCCTTGCTTTTACTTGATACAAGTCCATAGTGATCAAGCAAAAAAGTAAAATATAAAAATATACGTTGGAAGCATTTTGTGGTTGTTGGATGCTCCTGGCATGTTCTTTATCTTCAACCTTTTCTTTTTAACTTGGGAACTATACTAATTTAAATGCACACTCACTCTAGAAATTAATGACTTATTGCTTCCATCTATCATAACTCATCTAATTTTTATTGCACTAAAAGGAGAACATAGAAATAGAAATAGAAAGTCTCGCATGTTATAAATACGGTATTATTAAAGTTTAAATCTCGGGCTTGATGATATTGTTTAAGGGACTTTTACCCATTTTGCCCATCTTACTTCTTATTTTCTACGATACACAAAGTTGAAAGTGTAACTACCTTGTGTTTGCCTTTCAAAGTAAATAAAATTATCTGACTGGCAACTTTTTTCTATTAGCTGTAAATTCTTTTTTTGTTTTTGCATTCTTGTGAGTGGTGACTGATAATGTTTGGACATTACAATGGCATCAAATTCTCTAGAACTCTTTTTCTTGAGAGAGATGAAACGAGAAAGTAAAAGAAAGGAAAAGGACCCGTGAAGTGATTATTAATGGGTTAACAGAAAAGGACTTGTGAAGTGATTATTAATGGGTTGACAGGGTGGTTGTTTGGAATAAGTTGCACTATTGAGCTTGATGTTAAAATCTTTACACAAATTAGAGAATAAAATGGGCCATAACAAAATCAAAAGATAATAATGACACATAGCTATTATATGAAAAAAAAAACATTCTATATGATCTGCCAAACTAATACTCTCTCTAAACCCCTCATTTAGAGTTCATATGTCACAATAAATTAATGATTAATTAGTGTTTATTGTTTAATGAATAAGTTTTTCTTTTTCTTTTTTTCTTTTTGTGGTTTGGTAAAGGTAAAAAATTAAGAGAATGACATGAAAAAATGAATAAGAATATTTTCTTGTTACCTACAGTTGGTTCGACTCCTTTTATTTACACATGGTATTGTGACTTAAGATTTGAGTTGTGAAGTTTTGAATGTGTTAGTATGTTGTCCAGTCAGAGTTAAGGTTCAATTAGTAAATTTTCGATGAGTATTGAGATTTCAATCCCTTTTGAGTTTATTGTTGCTGTGGTTTTGGGTCTAAACTTCAAAATTTTGTTGTGTTTAGGTTCGTAATGTTTCAGACATCCTTCTCGTGGACAATACGCTGTCTCTTAGTTCAACACATAACTTATATTTTCTAAGTATTCCATCAACAAACATCCCTTTCATGGTGTGAAAGACTGCAGTAGACAAATATCCATTTTCTTTGAAAAACTCTAAAATGTCCTTGCATGATTCTCAATATAAGCTAATACCGAGAAAGCAAAATGGATAGAAAACACAATTATGAATTGTGAAGTTCCTCTTATATCAAATAAGAAGAAATGTATTGTGCAATGTCATTAGAGTGCATGGTGGATGTCGCAATCATGAAGATGGGGAAGGAGGTTACTCAATGATCAGGTATAAACAATATTTCGATATATTCTAGTTTTATTATATAAATAAAACCACAAGTAAATTGGTAAATATGTTTTCTATTTTTTTTTATTAAATGATAATGATGATTTATGGTGAAATCCTATCCCTATTTAGTTTGACATATAGTTCTTTTTTCAGTTACAAGCCAATATAAATTTTGGTTGGTGACCATTGCTAGGGAGGGCTTTATATACCTAAAAGGACAATTACCAAATCATTGAGGAAGAAAATGACAGATTGCAAGCTGCTCACGGTTTCACTTTGAGATATTTGAAAGAAAAATGTTCATGATCCCAACCAGAGGTGTTGTGGTTTGGTCCTTTTCCCGATCGTAATGGTAATAAACACGACGTATGGGTATGTTTGCTTGTGAGAAAGAAGGTTGTTTACCATCAACTTCTCCACTA

mRNA sequence

ATGGCTGTGGACGCCGTCGTGTTAGCCGCCGTGATGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTATTCGTGGCCGTGGAGAAGAGGGGATATTGAGGTAACAAGATTGGCAGTCGCGCGAGCCACGTATAATCCCTGTTATTCCGGTGACCTCGCCGTCCGTATGGTTCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTGGGGTTCCCAAGAAGGTGCTTCAATTCGCTGAAGATGCAAGTAGTGTAGTGGAGTCTGCTTTCAGTAATCTTGGTAGTCTGGACATTCTTGTAGCAGCTTGGGAACTTTTTGGTATCAACAGAAGATTTGTCTACGAAATGGATTTCGAACAGTTACAAGCCAATATAAATTTTGGTTGGTGACCATTGCTAGGGAGGGCTTTATATACCTAAAAGGACAATTACCAAATCATTGAGGAAGAAAATGACAGATTGCAAGCTGCTCACGGTTTCACTTTGAGATATTTGAAAGAAAAATGTTCATGATCCCAACCAGAGGTGTTGTGGTTTGGTCCTTTTCCCGATCGTAATGGTAATAAACACGACGTATGGGTATGTTTGCTTGTGAGAAAGAAGGTTGTTTACCATCAACTTCTCCACTA

Coding sequence (CDS)

ATGGCTGTGGACGCCGTCGTGTTAGCCGCCGTGATGAAGAGGAGAAGTGGGTTCCAGTCACCAAGCTATTCGTGGCCGTGGAGAAGAGGGGATATTGAGGTAACAAGATTGGCAGTCGCGCGAGCCACGTATAATCCCTGTTATTCCGGTGACCTCGCCGTCCGTATGGTTCCTGCTCCTCGTGGTGCTGGTATTGTTGCTGCTGGGGTTCCCAAGAAGGTGCTTCAATTCGCTGAAGATGCAAGTAGTGTAGTGGAGTCTGCTTTCAGTAATCTTGGTAGTCTGGACATTCTTGTAGCAGCTTGGGAACTTTTTGGTATCAACAGAAGATTTGTCTACGAAATGGATTTCGAACAGTTACAAGCCAATATAAATTTTGGTTGGTGA

Protein sequence

MAVDAVVLAAVMKRRSGFQSPSYSWPWRRGDIEVTRLAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFAEDASSVVESAFSNLGSLDILVAAWELFGINRRFVYEMDFEQLQANINFGW*
Homology
[Close]
BLAST of CSPI02G06270 vs. ExPASy Swiss-Prot
Match: Q8L8Y0 (40S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.0e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 182 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 210

[Close]
BLAST of CSPI02G06270 vs. ExPASy Swiss-Prot
Match: Q93VB8 (40S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.0e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 182 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 210

[Close]
BLAST of CSPI02G06270 vs. ExPASy Swiss-Prot
Match: P49688 (40S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 5.0e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 183 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 211

[Close]
BLAST of CSPI02G06270 vs. ExPASy Swiss-Prot
Match: Q9SCM3 (40S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.0e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 174 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 202

[Close]
BLAST of CSPI02G06270 vs. ExPASy Swiss-Prot
Match: P27685 (40S ribosomal protein S2 OS=Dictyostelium discoideum OX=44689 GN=rps2 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.1e-04
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFAEDASSVVESAFSNLGSLDILVAAWELFGINR 109
           G +AVR+VPAPRG GIVAA VPKK+LQ+A     V  S+     ++   V A   F I +
Sbjct: 176 GSVAVRLVPAPRGTGIVAARVPKKLLQYA-GVDDVYTSSRGKTRTMGNFVMA-TFFAITK 235

Query: 110 RFVY 114
            F Y
Sbjct: 236 TFAY 237

[Close]
BLAST of CSPI02G06270 vs. ExPASy TrEMBL
Match: A0A0A0LKB1 (Ribosomal_S5_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G060430 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.6e-57
Identity = 116/124 (93.55%), Postives = 120/124 (96.77%), Query Frame = 0 

Query: 1   MAVDAVVLAAVMKRRSGFQSPSYSWPWRRGDIEVTRLAVARATYNPCYSGDLAVRMVPAP 60
           MAVDAVVLAAVMKRRSGFQSPSYSWPWRRGDIEVTRLAV RATYNPCYSGDLAVRMVPAP
Sbjct: 1   MAVDAVVLAAVMKRRSGFQSPSYSWPWRRGDIEVTRLAVVRATYNPCYSGDLAVRMVPAP 60

Query: 61  RGAGIVAAGVPKKVLQFAEDASSVVESAFSNLGSLDILVAAWELFGINRRFVYEMDFEQL 120
           RGAGIVAAGVPKKVLQFA DASSVVES F+NLGSLDILVAAWELFGINRRFVYEMDFEQ+
Sbjct: 61  RGAGIVAAGVPKKVLQFA-DASSVVESTFNNLGSLDILVAAWELFGINRRFVYEMDFEQV 120

Query: 121 QANI 125
            ++I
Sbjct: 121 VSDI 123

[Close]
BLAST of CSPI02G06270 vs. ExPASy TrEMBL
Match: A0A5A7UZU0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00750 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.4e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1   MAVDAVVLAAVMKRRSGFQSPSYSWPWRRG 31
           +AVDA+VLA V KRRS FQSPSYSWPWR G
Sbjct: 122 VAVDAIVLAVVAKRRSRFQSPSYSWPWRSG 151

[Close]
BLAST of CSPI02G06270 vs. ExPASy TrEMBL
Match: M1D1B2 (40S ribosomal protein S2 OS=Solanum tuberosum OX=4113 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.4e-04
Identity = 35/68 (51.47%), Postives = 42/68 (61.76%), Query Frame = 0 

Query: 29  RGDIEVTRLAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVE 88
           RG I + +L+V      P   G + VRMVPAPRGAGIVAA VPKKVLQFA  ED  +   
Sbjct: 137 RGGIILAKLSVI-----PGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSR 196

Query: 89  SAFSNLGS 95
            +   LG+
Sbjct: 197 GSTKTLGN 199

[Close]
BLAST of CSPI02G06270 vs. ExPASy TrEMBL
Match: A0A7I8I887 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_01000213 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-04
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 29  RGDIEVTRLAVARATYN-PC----YSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDA 88
           RG I + +L+V    +  PC      G + VRMVPAPRGAGIVAA VPKKVLQFA  ED 
Sbjct: 46  RGAIILAKLSVIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDV 105

Query: 89  SSVVESAFSNLGS 95
            +    +   LG+
Sbjct: 106 FTSSRGSTKTLGN 118

[Close]
BLAST of CSPI02G06270 vs. ExPASy TrEMBL
Match: A0A7I8IPS6 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_04005582 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 5.7e-04
Identity = 36/73 (49.32%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 29  RGDIEVTRLAVARATYN-PC----YSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDA 88
           RG I + +L+V    +  PC      G + VRMVPAPRGAGIVAA VPKKVLQFA  ED 
Sbjct: 56  RGAIILAKLSVIGKPHTVPCKVTGKCGSVTVRMVPAPRGAGIVAARVPKKVLQFAGIEDV 115

Query: 89  SSVVESAFSNLGS 95
            +    +   LG+
Sbjct: 116 FTSSRGSTKTLGN 128

[Close]
BLAST of CSPI02G06270 vs. NCBI nr
Match: KAG7027729.1 (40S ribosomal protein S2-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 58.5 bits (140), Expect = 4.8e-05
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 37  LAVARATYNPCYSGDLAVRMVPAPRGAGIVAAGVPKKVLQFA--EDASSVVESAFSNLGS 95
           + +A+ +++PC    L VRMVPAPRGAGIVAA VPKKVLQFA  ED  +    +   LG+
Sbjct: 98  IILAKLSFDPCEKRVLGVRMVPAPRGAGIVAARVPKKVLQFAGIEDVFTSSRGSTKTLGN 157

[Close]
BLAST of CSPI02G06270 vs. NCBI nr
Match: KAA0059049.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 6.9e-04
Identity = 24/30 (80.00%), Postives = 26/30 (86.67%), Query Frame = 0 

Query: 1   MAVDAVVLAAVMKRRSGFQSPSYSWPWRRG 31
           +AVDA+VLA V KRRS FQSPSYSWPWR G
Sbjct: 122 VAVDAIVLAVVAKRRSRFQSPSYSWPWRSG 151

[Close]
BLAST of CSPI02G06270 vs. TAIR 10
Match: AT1G58983.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 182 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 210

[Close]
BLAST of CSPI02G06270 vs. TAIR 10
Match: AT1G59359.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 182 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 210

[Close]
BLAST of CSPI02G06270 vs. TAIR 10
Match: AT1G58380.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 182 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 210

[Close]
BLAST of CSPI02G06270 vs. TAIR 10
Match: AT1G58684.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 182 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 210

[Close]
BLAST of CSPI02G06270 vs. TAIR 10
Match: AT2G41840.1 (Ribosomal protein S5 family protein )

HSP 1 Score: 48.9 bits (115), Expect = 3.5e-06
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 50  GDLAVRMVPAPRGAGIVAAGVPKKVLQFA 79
           G + VRMVPAPRG+GIVAA VPKKVLQFA
Sbjct: 183 GSVTVRMVPAPRGSGIVAARVPKKVLQFA 211

The following BLAST results are available for this feature:
BLAST of CSPI02G06270 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L8Y05.0e-0582.7640S ribosomal protein S2-1 OS=Arabidopsis thaliana OX=3702 GN=RPS2A PE=2 SV=2[more]
Q93VB85.0e-0582.7640S ribosomal protein S2-2 OS=Arabidopsis thaliana OX=3702 GN=RPS2B PE=2 SV=1[more]
P496885.0e-0582.7640S ribosomal protein S2-3 OS=Arabidopsis thaliana OX=3702 GN=RPS2C PE=1 SV=2[more]
Q9SCM35.0e-0582.7640S ribosomal protein S2-4 OS=Arabidopsis thaliana OX=3702 GN=RPS2D PE=2 SV=1[more]
P276851.1e-0446.8840S ribosomal protein S2 OS=Dictyostelium discoideum OX=44689 GN=rps2 PE=1 SV=1[more]
BLAST of CSPI02G06270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKB17.6e-5793.55Ribosomal_S5_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G060... [more]
A0A5A7UZU03.4e-0480.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G0075... [more]
M1D1B24.4e-0451.4740S ribosomal protein S2 OS=Solanum tuberosum OX=4113 PE=3 SV=1[more]
A0A7I8I8875.7e-0449.32Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_01000213 PE=3 SV... [more]
A0A7I8IPS65.7e-0449.32Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_04005582 PE=3 SV... [more]
BLAST of CSPI02G06270 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027729.14.8e-0553.3340S ribosomal protein S2-3, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0059049.16.9e-0480.00gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of CSPI02G06270 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G58983.13.5e-0682.76Ribosomal protein S5 family protein [more]
AT1G59359.13.5e-0682.76Ribosomal protein S5 family protein [more]
AT1G58380.13.5e-0682.76Ribosomal protein S5 family protein [more]
AT1G58684.13.5e-0682.76Ribosomal protein S5 family protein [more]
AT2G41840.13.5e-0682.76Ribosomal protein S5 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005324Ribosomal protein S5, C-terminalPFAMPF03719Ribosomal_S5_Ccoord: 50..78
e-value: 1.6E-5
score: 24.2
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 35..101
e-value: 3.3E-7
score: 32.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G06270.1CSPI02G06270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome