CSPI02G06240 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G06240
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S acidic ribosomal protein P3
Location	Chr2: 4807948 .. 4809371 (+)
RNA-Seq Expression	CSPI02G06240
Synteny	CSPI02G06240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAACAAAAGCAAACCCTCGTTTTCATCTCTCGCTAGGGTTTCATCTGCCAACATAAAAACCAAACACAATCCGTAGAAGAGAGCCGTCCACTCCAAACTCACTCCTTCATTCTCTTCAACCCAAATCCCCCATTCCATCATCAAACCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCTGACTCCACCTACGAGCTCCAGAGGAAACTTGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCCTTCATTACTCCTTCCTCCGCCGTTTTCCAGGTATCCGTCGTTTTCTCTGTTATTTTGGCTTTTCATTCCTCTTGATCTGATCCGTTTACTCTTCAATCTCTAACTATAAACTCGCCTTCTCAGTGTTTGTTTGATTATTTAGTCTGTTTAGTAGTGTTTTTGTATGTATGAATATGTATTTTTTTTCCCCTTTTATTCGTGTATTGGGGGGTCTATTGTTTTTCTAGTTGGGCATATGTTTGATGTTGGTGTCTTAACAATTGGGATTATGGGTTTTAGGTACGTGATCGTTTAAGCAACTATTGATTATGGGAATTTGCTAAATATATGGACATCTGATGAGTTAAAGCATTTTTTGTGATCATTTTAGTATGTTTATCCATGAGTTCCTTGATTGGTGTATGTCTTACCTGCATTCACTCATTGAATTTTAAGAAGATCTATAACATGTTTCAAGTAAAAATGTGTAATTCCCTGTCATAGTTCTTCTGAGATTGTGGTTTTTATTTAAGCTATATTTATGATTTTTGACATCTCCCCAAGTATCCTCCTTGCTTGTCTGTTGTTGTCTGTTGTGTTTGCATGGTTTAAACATTCGTATTTCAGGTGATTGTTGGCGGTGGAAGTGGTGGCGGTTTCAGTGCTGGTGGTGGAGCTGCAGCTGCCACTGCTGGAGGAGCTGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGATCTTGGCCTATCACTTTTTGATTAGATTGGTATTTTAATTACTCGTTATTGCTTTTTTCAACCTAAGAGTTTGTAGCACTAAGGTTTTCTTTTCTGGAAATTATGTCTATGCATTTACTTGAATTTGCAAGTTCAGTTGATGTTCTTGTTTAAGGACGTAAATTTTGTTACTGACCCTTGTCAAATGGTTGAGAATTAGATATGTTATTTTGTTATTTCGTTTGGGAAGTTACTTCTGATTTCACCATCATAGATTTTATCTATTTGTTGTTAGAGGAGATTCTAGGCCATGGTGGTTAATTGTTTTTCTTTCTAACTATGAGTAGAGAATGAGAATTTGAACCTTAATTTGT

mRNA sequence

TTTAACAAAAGCAAACCCTCGTTTTCATCTCTCGCTAGGGTTTCATCTGCCAACATAAAAACCAAACACAATCCGTAGAAGAGAGCCGTCCACTCCAAACTCACTCCTTCATTCTCTTCAACCCAAATCCCCCATTCCATCATCAAACCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCTGACTCCACCTACGAGCTCCAGAGGAAACTTGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCCTTCATTACTCCTTCCTCCGCCGTTTTCCAGGTGATTGTTGGCGGTGGAAGTGGTGGCGGTTTCAGTGCTGGTGGTGGAGCTGCAGCTGCCACTGCTGGAGGAGCTGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGATCTTGGCCTATCACTTTTTGATTAGATTGGTATTTTAATTACTCGTTATTGCTTTTTTCAACCTAAGAGTTTGTAGCACTAAGGTTTTCTTTTCTGGAAATTATGTCTATGCATTTACTTGAATTTGCAAGTTCAGTTGATGTTCTTGTTTAAGGACGTAAATTTTGTTACTGACCCTTGTCAAATGGTTGAGAATTAGATATGTTATTTTGTTATTTCGTTTGGGAAGTTACTTCTGATTTCACCATCATAGATTTTATCTATTTGTTGTTAGAGGAGATTCTAGGCCATGGTGGTTAATTGTTTTTCTTTCTAACTATGAGTAGAGAATGAGAATTTGAACCTTAATTTGT

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGTAAGTGGACCGCCAATCAGTATTCCGGTGACCTTGAAGGCTCCGCTGACTCCACCTACGAGCTCCAGAGGAAACTTGTTCAATCTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCCTTCATTACTCCTTCCTCCGCCGTTTTCCAGGTGATTGTTGGCGGTGGAAGTGGTGGCGGTTTCAGTGCTGGTGGTGGAGCTGCAGCTGCCACTGCTGGAGGAGCTGCTCCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGAAGATCTTGGCCTATCACTTTTTGATTAG

Protein sequence

MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITPSSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLFD*

Homology

[Close]

BLAST of CSPI02G06240 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 9.1e-33
Identity = 79/120 (65.83%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVF V++GGG GGGF+AGGGAAA   GG   AAA    EKK+E  EE ++ D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 119

[Close]

BLAST of CSPI02G06240 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.7e-31
Identity = 82/122 (67.21%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFS ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDE--DLGLS 120
           +SAVFQVIVGGG GGGFSAGG   AA++GG A  AA AP E  E+ KEES++E  D G  
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGG---AASSGGGAGEAAAAPKE-DEKKKEESEEEEGDFGFD 118

[Close]

BLAST of CSPI02G06240 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 8.0e-29
Identity = 75/123 (60.98%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGV+TFVCR++GG+WTA Q+SG++E SA + YELQR+LV +A + DS  GVQSSFS +TP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  SSAVFQVIVGGGSGGGF--SAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLS 120
           SSAVFQVIVG   GG    S GGG  AA +GG   AAAEAP E+K+E ++E  D+D+G S
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFS 120

Query: 121 LFD 122
           LFD
Sbjct: 121 LFD 120

[Close]

BLAST of CSPI02G06240 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 127.9 bits (320), Expect = 8.0e-29
Identity = 78/121 (64.46%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGV+TFVCRSSG +WTA Q  G+LE SA + YELQR+LV +A + DS+ GVQSSFS ++P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           SSAVFQVI+ G  GGG + GGGAAA  A G A A A    EKKEE KEES+D DLG SLF
Sbjct: 61  SSAVFQVII-GAVGGGAAIGGGAAAGAASGGAAAEAPKAEEKKEEEKEESED-DLGFSLF 119

Query: 121 D 122
           D
Sbjct: 121 D 119

[Close]

BLAST of CSPI02G06240 vs. ExPASy Swiss-Prot
Match: O01725 (60S acidic ribosomal protein P2 OS=Branchiostoma floridae OX=7739 PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 34/51 (66.67%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 73  SGGGF--SAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLFD 122
           SGGG   +AGGG AAA  GGAAPAA E   EKKEE +EESDD D+G  LFD
Sbjct: 67  SGGGVAAAAGGGGAAAGGGGAAPAAEEKKEEKKEESEEESDD-DMGFGLFD 116

[Close]

BLAST of CSPI02G06240 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 8.2e-53
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           SSAVFQVIVGGGSGGGFSAGGGAAAA AGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of CSPI02G06240 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.2e-49
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGGG GGGF  GGGAAAA AGG APAAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGF-IGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of CSPI02G06240 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 7.2e-49
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGGG GGGF  GGGAAAA AGG APAAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGF-IGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of CSPI02G06240 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.7e-46
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVI+GG SGGGF  GGGAAAA AGG APAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of CSPI02G06240 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.7e-46
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVI+GG SGGGF  GGGAAAA AGG APAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of CSPI02G06240 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 1.7e-52
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           SSAVFQVIVGGGSGGGFSAGGGAAAA AGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of CSPI02G06240 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 203.4 bits (516), Expect = 1.1e-48
Identity = 115/122 (94.26%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGGSGGGF-SAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSL 120
           +SAVFQVIVGGG GGGF   GGGAAAA AGG APAAAEAPAEKKEEVKEESDDEDLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 122
           FD
Sbjct: 121 FD 122

[Close]

BLAST of CSPI02G06240 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 115/121 (95.04%), Postives = 116/121 (95.87%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVIVGGG GGGF  GGGAAAA AGG APAAAEAPAEKKEEVKEESDDEDLGLSLF
Sbjct: 61  TSAVFQVIVGGGGGGGF-IGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of CSPI02G06240 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 193.4 bits (490), Expect = 1.2e-45
Identity = 104/121 (85.95%), Postives = 112/121 (92.56%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVFQVI+GG SGGGF  GGGAAAA AGG APAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of CSPI02G06240 vs. NCBI nr
Match: XP_023537756.1 (60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S acidic ribosomal protein P3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020919.1 60S acidic ribosomal protein P3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 1.8e-41
Identity = 101/121 (83.47%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSGGVQSSFS+++P
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           SSAVFQVI+GG SGGG  +GG AAAA AGGAAP AAEAPA  KEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAP-AAEAPAPAKEEVKEESDDDDLGFSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of CSPI02G06240 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 141.0 bits (354), Expect = 6.5e-34
Identity = 79/120 (65.83%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVF V++GGG GGGF+AGGGAAA   GG   AAA    EKK+E  EE ++ D G  LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 119

[Close]

BLAST of CSPI02G06240 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 137.1 bits (344), Expect = 9.4e-33
Identity = 79/120 (65.83%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120
           +SAVF V++GGG GGGF+AGGGAAA   GG   AAA    EKK+E  EE ++ D G  LF
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 118

[Close]

BLAST of CSPI02G06240 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-32
Identity = 82/122 (67.21%), Postives = 96/122 (78.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
           MGVFTFVC++ GG W+A Q+ G+LE SA STYELQRKLVQ +LS DSSGGVQSSFS ++P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIVGGGSGGGFSAGGGAAAATAGGAAPAAAEAPAEKKEEVKEESDDE--DLGLS 120
           +SAVFQVIVGGG GGGFSAGG   AA++GG A  AA AP E  E+ KEES++E  D G  
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGG---AASSGGGAGEAAAAPKE-DEKKKEESEEEEGDFGFD 118

[Close]

BLAST of CSPI02G06240 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 123.6 bits (309), Expect = 1.1e-28
Identity = 61/82 (74.39%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60
          MGVF+FVC+S GG+WTA Q+ GDLE SA STY+LQRKLVQ+ALS DSSGGVQSSFS ++P
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 SSAVFQVIVGGGSGGGFSAGGG 83
          +SAVF V++GGG GGGF+AGGG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGGG 82

The following BLAST results are available for this feature:

BLAST of CSPI02G06240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	9.1e-33	65.83	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
Q9SVZ6	1.7e-31	67.21	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
O24413	8.0e-29	60.98	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
P56724	8.0e-29	64.46	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
O01725	5.2e-04	66.67	60S acidic ribosomal protein P2 OS=Branchiostoma floridae OX=7739 PE=3 SV=1	[more]

BLAST of CSPI02G06240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB2	8.2e-53	99.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A5D3BNN6	7.2e-49	95.04	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	7.2e-49	95.04	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A6J1KB28	5.7e-46	85.95	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]
A0A6J1ENN1	5.7e-46	85.95	60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of CSPI02G06240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148320.1	1.7e-52	99.17	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_038889531.1	1.1e-48	94.26	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_008451467.1	1.5e-48	95.04	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
XP_022929782.1	1.2e-45	85.95	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]
XP_023537756.1	1.8e-41	83.47	60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S a...	[more]

BLAST of CSPI02G06240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	6.5e-34	65.83	60S acidic ribosomal protein family	[more]
AT5G57290.3	9.4e-33	65.83	60S acidic ribosomal protein family	[more]
AT4G25890.1	1.2e-32	67.21	60S acidic ribosomal protein family	[more]
AT5G57290.2	1.1e-28	74.39	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 69..120 e-value: 1.2E-10 score: 41.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..121
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G06240.1	CSPI02G06240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome