CSPI02G06090 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G06090
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 4625650 .. 4625868 (+)
RNA-Seq Expression	CSPI02G06090
Synteny	CSPI02G06090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGGTTGGAGGGACCATTCTAACTTCAGTTGAGGAGGATTTGGTCAGGGCAATCAAAGGCGACAAGGTGGTCAAGGACACTATCGCGACGAGGCATCTGGTCATTGCCAAAAACATTACGATAGAGCACACCACTCAGCACCCCAACATCAACAAGCCACCCACCACTACTTCATCCCCCTCTTCATCTATGTCTCTTCTTCGAGAATACATGTAG

mRNA sequence

ATGTGGGTTGGAGGGACCATTCTAACTTCAGTTGAGGAGGATTTGGTCAGGGCAATCAAAGGCGACAAGGTGGTCAAGGACACTATCGCGACGAGGCATCTGGTCATTGCCAAAAACATTACGATAGAGCACACCACTCAGCACCCCAACATCAACAAGCCACCCACCACTACTTCATCCCCCTCTTCATCTATGTCTCTTCTTCGAGAATACATGTAG

Coding sequence (CDS)

ATGTGGGTTGGAGGGACCATTCTAACTTCAGTTGAGGAGGATTTGGTCAGGGCAATCAAAGGCGACAAGGTGGTCAAGGACACTATCGCGACGAGGCATCTGGTCATTGCCAAAAACATTACGATAGAGCACACCACTCAGCACCCCAACATCAACAAGCCACCCACCACTACTTCATCCCCCTCTTCATCTATGTCTCTTCTTCGAGAATACATGTAG

Protein sequence

MWVGGTILTSVEEDLVRAIKGDKVVKDTIATRHLVIAKNITIEHTTQHPNINKPPTTTSSPSSSMSLLREYM*

Homology

[Close]

BLAST of CSPI02G06090 vs. ExPASy TrEMBL
Match: A0A5A7U2F0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001090 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.7e-08
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MWVGGTILTSVEEDLVRAIKGDKVVKDTIATRHLVIAKNITIEHTTQHPNINKPP 56
           M VG TILTSV +D VR  KGDKVVK+ I  R  VIAK+I   HTTQ PN+NKPP
Sbjct: 110 MQVGETILTSVGKDWVRVTKGDKVVKNIIMVRFSVIAKDIMKNHTTQCPNVNKPP 164

[Close]

BLAST of CSPI02G06090 vs. ExPASy TrEMBL
Match: A0A5A7U0K6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G001020 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.2e-04
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4  GGTILTSVEEDLVRAIKGDKVVKDTIATRHLVIAKNITIEHTTQHPNI-NKPPTTTSSPS 63
          G  ILT V ED V+AIKG+KVVKDTIA R L+IAK+I  + T  H NI NK    T    
Sbjct: 4  GEIILTLVGEDQVKAIKGNKVVKDTIAARQLIIAKDIMTDCTIHHSNIKNKGMNNTRRDE 63

Query: 64 SS 65
           S
Sbjct: 64 QS 65

[Close]

BLAST of CSPI02G06090 vs. ExPASy TrEMBL
Match: A0A5A7T2D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001550 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.2e-04
Identity = 35/61 (57.38%), Postives = 41/61 (67.21%), Query Frame = 0


Query: 4   GGTI-LTSVEEDLVRAIKGDKVVKDTIATRHLVIAKNIT-IEHTTQHPNINKPPTTTSSP 63
           GG I LT   E  VR IKG K+VK+ I ++HLVIAK+IT I+ TTQH  INKPP     P
Sbjct: 68  GGEITLTLAGEVKVRIIKGVKLVKEIITSKHLVIAKDITIIDRTTQHLIINKPPPLPYLP 127

[Close]

BLAST of CSPI02G06090 vs. NCBI nr
Match: KAA0047845.1 (hypothetical protein E6C27_scaffold133G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 7.6e-08
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 1   MWVGGTILTSVEEDLVRAIKGDKVVKDTIATRHLVIAKNITIEHTTQHPNINKPP 56
           M VG TILTSV +D VR  KGDKVVK+ I  R  VIAK+I   HTTQ PN+NKPP
Sbjct: 110 MQVGETILTSVGKDWVRVTKGDKVVKNIIMVRFSVIAKDIMKNHTTQCPNVNKPP 164

[Close]

BLAST of CSPI02G06090 vs. NCBI nr
Match: KAA0048738.1 (uncharacterized protein E6C27_scaffold43G00360 [Cucumis melo var. makuwa] >TYK31597.1 uncharacterized protein E5676_scaffold172G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-04
Identity = 34/62 (54.84%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 4  GGTILTSVEEDLVRAIKGDKVVKDTIATRHLVIAKNITIEHTTQHPNI-NKPPTTTSSPS 63
          G  ILT V ED V+AIKG+KVVKDTIA R L+IAK+I  + T  H NI NK    T    
Sbjct: 4  GEIILTLVGEDQVKAIKGNKVVKDTIAARQLIIAKDIMTDCTIHHSNIKNKGMNNTRRDE 63

Query: 64 SS 65
           S
Sbjct: 64 QS 65

The following BLAST results are available for this feature:

BLAST of CSPI02G06090 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G06090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2F0	3.7e-08	65.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U0K6	4.2e-04	54.84	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T2D3	7.2e-04	57.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI02G06090 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047845.1	7.6e-08	65.45	hypothetical protein E6C27_scaffold133G001090 [Cucumis melo var. makuwa]	[more]
KAA0048738.1	8.7e-04	54.84	uncharacterized protein E6C27_scaffold43G00360 [Cucumis melo var. makuwa] >TYK31...	[more]

BLAST of CSPI02G06090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G06090.1	CSPI02G06090.1	mRNA