CSPI02G05860 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G05860
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribosomal protein L23
Location	Chr2: 4319424 .. 4319767 (+)
RNA-Seq Expression	CSPI02G05860
Synteny	CSPI02G05860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGATGACAAACGGCTCATCTGGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTATTATTATATTTACCTCATTATATTATATAATTAGTTCATGGTGGATATGGAAGAAACTCATAATCTCAAATTTACAGGTTGAAGATTGCAATAGAAAATGTCTCATGA

mRNA sequence

GTGATGACAAACGGCTCATCTGGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTTGAAGATTGCAATAGAAAATGTCTCATGA

Coding sequence (CDS)

ATGACAAACGGCTCATCTGGCCGTGACCTTATCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCTGGGGCGGAGAACCCATCGCTGTCTCGGCTGTGCTATCAGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTTGAAGATTGCAATAGAAAATGTCTCATGA

Protein sequence

MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWLKIAIENVS*

Homology

[Close]

BLAST of CSPI02G05860 vs. ExPASy TrEMBL
Match: A0A0A0LGR1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055570 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.1e-42
Identity = 83/86 (96.51%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          MTNGSS RDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MTNGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 87
          YPLRTWLPSVYRGHDNWLKIAIENVS
Sbjct: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 86

[Close]

BLAST of CSPI02G05860 vs. ExPASy TrEMBL
Match: A0A5C7GQ25 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027835 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.5e-37
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSS RDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CSPI02G05860 vs. ExPASy TrEMBL
Match: A0A5C7HRI9 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014163 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.5e-37
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSS RDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CSPI02G05860 vs. ExPASy TrEMBL
Match: A0A2N9HQ72 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40355 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSS RDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CSPI02G05860 vs. ExPASy TrEMBL
Match: A0A6B9QQT2 (Ribosomal protein L23 OS=Peganum harmala OX=43879 GN=rpl23 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          M NGSS RDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNW 78
          YPLRTWLPSVYRGHDNW
Sbjct: 61 YPLRTWLPSVYRGHDNW 77

[Close]

BLAST of CSPI02G05860 vs. NCBI nr
Match: KAE8651661.1 (hypothetical protein Csa_021339 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 8.7e-43
Identity = 85/86 (98.84%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
          MTNGSS RDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1  MTNGSSRRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60

Query: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 87
          YPLRTWLPSVYRGHDNWLKIAIENVS
Sbjct: 61 YPLRTWLPSVYRGHDNWLKIAIENVS 86

[Close]

BLAST of CSPI02G05860 vs. NCBI nr
Match: TXG59590.1 (hypothetical protein EZV62_014163 [Acer yangbiense])

HSP 1 Score: 163.3 bits (412), Expect = 9.3e-37
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSS RDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CSPI02G05860 vs. NCBI nr
Match: TXG46680.1 (hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical protein EZV62_027838 [Acer yangbiense])

HSP 1 Score: 163.3 bits (412), Expect = 9.3e-37
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSS RDL+LNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CSPI02G05860 vs. NCBI nr
Match: PWA76046.1 (hypothetical protein CTI12_AA236480 [Artemisia annua])

HSP 1 Score: 161.8 bits (408), Expect = 2.7e-36
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSS RDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

[Close]

BLAST of CSPI02G05860 vs. NCBI nr
Match: KAB1210637.1 (hypothetical protein CJ030_MR6G010321 [Morella rubra] >KAB1226196.1 hypothetical protein CJ030_MR1G029169 [Morella rubra])

HSP 1 Score: 161.8 bits (408), Expect = 2.7e-36
Identity = 73/77 (94.81%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1   MTNGSSGRDLILNSQNFCRSIPAGAENPSLSRLCYQRLWGSRNRRALILGWAYYLDAFSS 60
           M NGSS RDL+LNSQNFCRSIPAGAENPSLSRLCY+RLWGSRNRRALILGWAYYLDAFSS
Sbjct: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102

Query: 61  YPLRTWLPSVYRGHDNW 78
           YPLRTWLPSVYRGHDNW
Sbjct: 103 YPLRTWLPSVYRGHDNW 119

The following BLAST results are available for this feature:

BLAST of CSPI02G05860 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G05860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGR1	2.1e-42	96.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G055570 PE=4 SV=1	[more]
A0A5C7GQ25	4.5e-37	96.10	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027835 PE=4 SV=1	[more]
A0A5C7HRI9	4.5e-37	96.10	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_014163 PE=4 SV=1	[more]
A0A2N9HQ72	1.3e-36	94.81	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40355 PE=4 SV=1	[more]
A0A6B9QQT2	1.3e-36	94.81	Ribosomal protein L23 OS=Peganum harmala OX=43879 GN=rpl23 PE=4 SV=1	[more]

BLAST of CSPI02G05860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651661.1	8.7e-43	98.84	hypothetical protein Csa_021339 [Cucumis sativus]	[more]
TXG59590.1	9.3e-37	96.10	hypothetical protein EZV62_014163 [Acer yangbiense]	[more]
TXG46680.1	9.3e-37	96.10	hypothetical protein EZV62_027835 [Acer yangbiense] >TXG46683.1 hypothetical pro...	[more]
PWA76046.1	2.7e-36	94.81	hypothetical protein CTI12_AA236480 [Artemisia annua]	[more]
KAB1210637.1	2.7e-36	94.81	hypothetical protein CJ030_MR6G010321 [Morella rubra] >KAB1226196.1 hypothetical...	[more]

BLAST of CSPI02G05860 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G05860.1	CSPI02G05860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0003676	nucleic acid binding