CSPI02G04890 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G04890
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Trafficking protein particle complex subunit
Location	Chr2: 3491055 .. 3493475 (-)
RNA-Seq Expression	CSPI02G04890
Synteny	CSPI02G04890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTATTTTAGTATAGAAATTGAAAAAGAAAAAAGAAAAAAGAAAGTCGTCGTAATTACATTTGATCCCCGCCACTGGCAACTCCCCCCCAGTCTCAAGCTCCCCGAAACTCCGCCTTAAGATCGGCGTTCACTGAAACTGGGTTTTGCGCCTTCCAATCTACGTTCTTACCCACACTTAATCCCTATCCACACCCATATTTATTTTTATTCTCATTTCCTTCATAATTCTTCAAATTTTGGATAGATCTAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGTAATCAACCTATTCAAACTACTTGTTCACGCAATTGGAAACACAAATTTCCCTTCATTTCCACCTGGGTTGAGATTTTTTAAGCTTTATTTCGTTTCTGGGAACCCCAGATTTCAGTTTTTTCATCTCATATTACAAAGATATATAATTCGGTTCTGGGTATTCTATATGGCTTGAACCTCTTATTGGGTTTGTTTTAAAATTTAGGATTATGGGTCTGCTGGACGAATGGATACGAATGACAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGTACGTTTTTCCTTCCTGTATTTTGTTTACTTTTTTTGCCTCAAACACATGGTTTCTGCCTCACATTCTGTGATTCCATAGATAAGCAGTTAAGTGAATCCCAGAGTGGGAAAGCACAGATGAAGTTCTAGAAACGTTATTGATCTTTGTTTAGTTTCTTGTTGAGCTCGAGAACTTATGAGGATGGGGATTCAAACATAACTTTTGGTTGAAATTATTGTGCCTGATTGGTTGAGTTTTGCTTGATTGTAAAAATGATATTGATGCTCTAGTTGAAAAATGTAGCCTTTTTCTTTATAGCCATGCTATAGTCTCCATAGATATGAGTGTGGGGATTCAAATATAAATTTTGGTTATTGAAATTGATCTTTGTTCAGTTTATTGTTTCAAGTATAAGAATGTATGAGAGTGGGGATTCAAACATAAATTTTGGTTGAGATTATTATGTCTTGATTAGTTGAGTTGTACTCAGATAGTTAGAAATGACATTAATCCTTTATTAGAAAAGTGTAGCTTTTAATAGCCATACTAATATACCGTAGTCTCCTTCGCAAATATTTTTGTGTTGTCAAGCTTTTGGAGGAAAAAATTAGCATGTGGTGCAACAGAAACCACAAAATTAGTTTTTTGAAATCTCGACTCTGTAACTGATCATGTTTAATCTTTTGTCATTACACTTTGCTACTTGCATAGGGGGAGGAGATTTAAAGATTGTTTTGATATGGATATGAATGGCTTTTGGTGTGAAGAATTAATAATTTTTTCATTATCAACCAACCTACATAAGAAATAGAAATGCTTGTTCCGAAGTATAATTTTATATTTCCTTGTTCAAATTTTTTTTATCTCTGCAAAGTGTCACGGCATTAACTTTATAAAGAACCAGAATCATGGATGGAAATTGTCTGTTGCAGGGACAAAGTTTTTTGTTGTGTGTGAACCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTACGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGAGCTTAGGATATCCTTCATTTTGTCAGTATTAAATTCAAGAAAGAAAGGCTCATGATATCATTGTGCAGAATACTTGATAATTTACCATCCTTAATGCTAAATGTACTCCGTTCCTAGTGATTCATGTGAGATTTGGTGGAAATAGAATGTTTCTTTTCAGTGTTGTTCATCAGGAAGTCGGGGTTAATTTTATGCCCATTTTTTTGTCATGTATACAGATGTGGATCCAGTTAAATGACAGAGCAATGTTATAAGCTTTTGGGATATGGTTAATTTAAGCAGCCAAAGTACTTACATTTTACTTCGACCAATTTAGATGAATGAAAGCATCAACTTCATGATGTTCATCGTTGAAATATAACTATGAAGGAATACAAGATAAACCACCCTCGAGCACACCAACTCAAGCTCTAGATCACTAAAAAGTTGTCTACCTTTTCTCACTCACCCTATCTTTATAACAAGACTCCGTAACTAACTTCCTACCAAATTACCCCTATACCGCTTTAATACTACCATACAAATATATTCTTATCTACGTACATTACACTATAACATAGTTGTGTAATGAGGCTGTGTGCACTTAAGTCTGGCAGGGATGAGCGAATAGATCAAGT

mRNA sequence

CCCTATTTTAGTATAGAAATTGAAAAAGAAAAAAGAAAAAAGAAAGTCGTCGTAATTACATTTGATCCCCGCCACTGGCAACTCCCCCCCAGTCTCAAGCTCCCCGAAACTCCGCCTTAAGATCGGCGTTCACTGAAACTGGGTTTTGCGCCTTCCAATCTACGTTCTTACCCACACTTAATCCCTATCCACACCCATATTTATTTTTATTCTCATTTCCTTCATAATTCTTCAAATTTTGGATAGATCTAAAGACGATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGATACGAATGACAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGGACAAAGTTTTTTGTTGTGTGTGAACCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTACGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGAGCTTAGGATATCCTTCATTTTGTCAGTATTAAATTCAAGAAAGAAAGGCTCATGATATCATTGTGCAGAATACTTGATAATTTACCATCCTTAATGCTAAATGTACTCCGTTCCTAGTGATTCATGTGAGATTTGGTGGAAATAGAATGTTTCTTTTCAGTGTTGTTCATCAGGAAGTCGGGGTTAATTTTATGCCCATTTTTTTGTCATGTATACAGATGTGGATCCAGTTAAATGACAGAGCAATGTTATAAGCTTTTGGGATATGGTTAATTTAAGCAGCCAAAGTACTTACATTTTACTTCGACCAATTTAGATGAATGAAAGCATCAACTTCATGATGTTCATCGTTGAAATATAACTATGAAGGAATACAAGATAAACCACCCTCGAGCACACCAACTCAAGCTCTAGATCACTAAAAAGTTGTCTACCTTTTCTCACTCACCCTATCTTTATAACAAGACTCCGTAACTAACTTCCTACCAAATTACCCCTATACCGCTTTAATACTACCATACAAATATATTCTTATCTACGTACATTACACTATAACATAGTTGTGTAATGAGGCTGTGTGCACTTAAGTCTGGCAGGGATGAGCGAATAGATCAAGT

Coding sequence (CDS)

ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCTGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGATACGAATGACAGTTTGAGAGTGGCGAGTTTGTGGCATTCTATGCATGCCATTTCCCAGCAGCTTTCGCCTATAGCTGGTTGTTCGGGTGTTGAACTTCTTGAAGCTGACACTTTCGATCTCCATTGCTTCCAGTCACTCACTGGGACAAAGTTTTTTGTTGTGTGTGAACCTGGGACTCAGCACATGGAGAGTCTTCTGAAGTACATTTATGAACTATACACAGATTTTGTCTTGAAGAATCCATTCTACGAGATGGAGATGCCTATACGGTGCGAGCTCTTTGACATCAACCTAGCGCAGGCAGTGCAAAAAGATCGTGTTGCTTTGCTTGGCCGATGA

Protein sequence

MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR*

Homology

[Close]

BLAST of CSPI02G04890 vs. ExPASy Swiss-Prot
Match: Q54UU1 (Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44689 GN=trappc4 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-34
Identity = 65/125 (52.00%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 4   IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAG-CSGVELL 63
           I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSP++G  SG+E++
Sbjct: 3   INSIYILNKAGTLIYQNDFGNTEKLSHNSYIRLGSTFHSLHAIASNLSPVSGSSSGIEVI 62

Query: 64  EADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCEL 123
           E + F L CFQ+ TG KF+V+ +P  Q +E LL  +YELYTD+VLKNPFYE+EM IRC+L
Sbjct: 63  ETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDL 122

Query: 124 FDINL 128
           FD  L
Sbjct: 123 FDYKL 127

[Close]

BLAST of CSPI02G04890 vs. ExPASy Swiss-Prot
Match: Q2TBL9 (Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CSPI02G04890 vs. ExPASy Swiss-Prot
Match: Q9ES56 (Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trappc4 PE=1 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CSPI02G04890 vs. ExPASy Swiss-Prot
Match: Q69BT7 (Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=Trappc4 PE=2 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.5e-31
Identity = 62/106 (58.49%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQ+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CSPI02G04890 vs. ExPASy Swiss-Prot
Match: Q9Y296 (Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC4 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-31
Identity = 61/106 (57.55%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 27  RMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVELLEADTFDLHCFQSLTGTKFFVVCEP 86
           R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHC+Q+LTG KF V+ +P
Sbjct: 102 RLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADP 161

Query: 87  GTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ 133
               ++SLL+ IYE+Y+DF LKNPFY +EMPIRCELFD NL  A++
Sbjct: 162 RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207

[Close]

BLAST of CSPI02G04890 vs. ExPASy TrEMBL
Match: A0A0A0LJ20 (Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2G034720 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.3e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of CSPI02G04890 vs. ExPASy TrEMBL
Match: A0A5A7TWY1 (Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00730 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.8e-75
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of CSPI02G04890 vs. ExPASy TrEMBL
Match: A0A1S3BVQ7 (Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC103494018 PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 6.8e-75
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of CSPI02G04890 vs. ExPASy TrEMBL
Match: A0A6J1DUU4 (Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=LOC111023297 PE=3 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.3e-73
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL+QAVQKDRVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]

BLAST of CSPI02G04890 vs. ExPASy TrEMBL
Match: A0A6J1KK16 (Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111493886 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 135/141 (95.74%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGTE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGT HME LLKYIYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTLHMEGLLKYIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLVQAVQKDRVALLGR 141

[Close]

BLAST of CSPI02G04890 vs. NCBI nr
Match: KGN61053.2 (hypothetical protein Csa_021294 [Cucumis sativus])

HSP 1 Score: 291.2 bits (744), Expect = 4.8e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 444 MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 503

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 504 LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 563

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQKDRVALLGR
Sbjct: 564 ELFDINLAQAVQKDRVALLGR 584

[Close]

BLAST of CSPI02G04890 vs. NCBI nr
Match: XP_004144741.1 (trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1 trafficking protein particle complex subunit 4 [Benincasa hispida])

HSP 1 Score: 291.2 bits (744), Expect = 4.8e-75
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQKDRVALLGR
Sbjct: 121 ELFDINLAQAVQKDRVALLGR 141

[Close]

BLAST of CSPI02G04890 vs. NCBI nr
Match: XP_008453237.1 (PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA0048113.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa] >TYJ96439.1 trafficking protein particle complex subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 289.7 bits (740), Expect = 1.4e-74
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINLAQAVQK+RVALLGR
Sbjct: 121 ELFDINLAQAVQKERVALLGR 141

[Close]

BLAST of CSPI02G04890 vs. NCBI nr
Match: XP_022156391.1 (trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156392.1 trafficking protein particle complex subunit 4 [Momordica charantia] >XP_022156393.1 trafficking protein particle complex subunit 4 [Momordica charantia])

HSP 1 Score: 285.4 bits (729), Expect = 2.7e-73
Identity = 136/141 (96.45%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPI+GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPISGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLKYIYELYTDFVLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKYIYELYTDFVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL+QAVQKDRVAL GR
Sbjct: 121 ELFDINLSQAVQKDRVALFGR 141

[Close]

BLAST of CSPI02G04890 vs. NCBI nr
Match: XP_041018648.1 (trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 282.7 bits (722), Expect = 1.7e-72
Identity = 135/141 (95.74%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+AGCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVAGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSLTGTKFFVVCEPGTQHME LLK IYELYTD+VLKNPFYEMEMPIRC
Sbjct: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMEGLLKAIYELYTDYVLKNPFYEMEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL QAVQKDRVALLGR
Sbjct: 121 ELFDINLTQAVQKDRVALLGR 141

[Close]

BLAST of CSPI02G04890 vs. TAIR 10
Match: AT5G02280.1 (SNARE-like superfamily protein )

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-72
Identity = 128/141 (90.78%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 1   MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPIAGCSGVE 60
           MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSP+ GCSG+E
Sbjct: 1   MAAIYSLYIINKSGGLIFYKDCGTKGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGIE 60

Query: 61  LLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLKNPFYEMEMPIRC 120
           LLEADTFDLHCFQSL GTKFFVVCEPGT HMESLL+YIYELYTD+VLKNPFYE+EMPIRC
Sbjct: 61  LLEADTFDLHCFQSLPGTKFFVVCEPGTPHMESLLRYIYELYTDYVLKNPFYEIEMPIRC 120

Query: 121 ELFDINLAQAVQKDRVALLGR 142
           ELFDINL QAVQ DRVALLGR
Sbjct: 121 ELFDINLTQAVQSDRVALLGR 141

[Close]

BLAST of CSPI02G04890 vs. TAIR 10
Match: AT1G51160.1 (SNARE-like superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-11
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 0


Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+         
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  -----AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY ++V+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLAQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

[Close]

BLAST of CSPI02G04890 vs. TAIR 10
Match: AT1G51160.2 (SNARE-like superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-11
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 0


Query: 5   YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPI--------- 64
           + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ P+         
Sbjct: 24  HMMYVFNRNGVCLLYKEWNRPLHTLNPQQDHKLMFGLLFSLKSLTAKMDPVNADKGNLGV 83

Query: 65  -----AGCSGVELLEADTFDLHCFQSLTGTKFFVVCEPGTQHMESLLKYIYELYTDFVLK 124
                 GCS       +T+ L   ++ +G K  +V  P T  +   LKYIY LY ++V+K
Sbjct: 84  PQLPGQGCS-FHSFRTNTYKLSFMETPSGIKIILVTHPKTGDLRESLKYIYSLYVEYVVK 143

Query: 125 NPFYEMEMPIRCELFDINLAQAVQ 133
           NP Y    PI+ ELF+  L Q V+
Sbjct: 144 NPIYSPGSPIKSELFNTALDQYVR 166

The following BLAST results are available for this feature:

BLAST of CSPI02G04890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54UU1	4.3e-34	52.00	Trafficking protein particle complex subunit 4 OS=Dictyostelium discoideum OX=44...	[more]
Q2TBL9	1.5e-31	58.49	Trafficking protein particle complex subunit 4 OS=Bos taurus OX=9913 GN=TRAPPC4 ...	[more]
Q9ES56	1.5e-31	58.49	Trafficking protein particle complex subunit 4 OS=Mus musculus OX=10090 GN=Trapp...	[more]
Q69BT7	1.5e-31	58.49	Trafficking protein particle complex subunit 4 OS=Rattus norvegicus OX=10116 GN=...	[more]
Q9Y296	3.4e-31	57.55	Trafficking protein particle complex subunit 4 OS=Homo sapiens OX=9606 GN=TRAPPC...	[more]

BLAST of CSPI02G04890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ20	2.3e-75	100.00	Trafficking protein particle complex subunit OS=Cucumis sativus OX=3659 GN=Csa_2...	[more]
A0A5A7TWY1	6.8e-75	99.29	Trafficking protein particle complex subunit OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BVQ7	6.8e-75	99.29	Trafficking protein particle complex subunit OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1DUU4	1.3e-73	96.45	Trafficking protein particle complex subunit OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1KK16	1.9e-72	95.74	Trafficking protein particle complex subunit OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of CSPI02G04890 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61053.2	4.8e-75	100.00	hypothetical protein Csa_021294 [Cucumis sativus]	[more]
XP_004144741.1	4.8e-75	100.00	trafficking protein particle complex subunit 4 [Cucumis sativus] >XP_038889173.1...	[more]
XP_008453237.1	1.4e-74	99.29	PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo] >KAA004...	[more]
XP_022156391.1	2.7e-73	96.45	trafficking protein particle complex subunit 4 [Momordica charantia] >XP_0221563...	[more]
XP_041018648.1	1.7e-72	95.74	trafficking protein particle complex subunit 4 [Juglans microcarpa x Juglans reg...	[more]

BLAST of CSPI02G04890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02280.1	1.4e-72	90.78	SNARE-like superfamily protein	[more]
AT1G51160.1	4.0e-11	27.08	SNARE-like superfamily protein	[more]
AT1G51160.2	4.0e-11	27.08	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007233	Trafficking protein particle complex subunit	SMART	SM01399	Sybindin_2	coord: 4..134 e-value: 4.8E-70 score: 248.7
IPR007233	Trafficking protein particle complex subunit	PFAM	PF04099	Sybindin	coord: 4..133 e-value: 1.6E-53 score: 180.5
IPR007233	Trafficking protein particle complex subunit	PANTHER	PTHR23249	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT	coord: 1..141
None	No IPR available	GENE3D	3.30.450.70		coord: 2..133 e-value: 8.6E-49 score: 167.5
None	No IPR available	PANTHER	PTHR23249:SF17	TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT-RELATED	coord: 1..141
None	No IPR available	CDD	cd14856	TRAPPC4_synbindin	coord: 5..130 e-value: 1.34831E-84 score: 241.653
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G04890.1	CSPI02G04890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0030008	TRAPP complex