CSPI02G04830 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G04830
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 3472897 .. 3473271 (-)
RNA-Seq Expression	CSPI02G04830
Synteny	CSPI02G04830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAACTGGTCGATTACAGAAACACTAAATGGAAGCAATTTCTTGCATCTAAGCTTGGATGCTGAAGAAATGTTAACTGAAGCGGGTTTTCTTCTTAACTATTTTCCAGAACTGTATGGGGAAGCAGAAATCGACATGTACGATATGGTTTCGCACAAATATTTTAAAGCAATCATGAGTAGGCTATCCAATGCTAACCAATTTGTTATTAGTTGGGGTCAAGACTTCGTCAACAAAATAAACTATACGAATGGAGATGAAATTTTGTTAGAACCTCGGGCCAAAATCCTATGTTTTAAGATTAACAAAGTTTCGGCTCTTAGAACTTATCCAGAAATGTCTAGTCAATATCGTTTCTATGGTAATTGTTAG

mRNA sequence

ATGGCTAACTGGTCGATTACAGAAACACTAAATGGAAGCAATTTCTTGCATCTAAGCTTGGATGCTGAAGAAATGTTAACTGAAGCGGGTTTTCTTCTTAACTATTTTCCAGAACTGTATGGGGAAGCAGAAATCGACATGTACGATATGGTTTCGCACAAATATTTTAAAGCAATCATGAGTAGGCTATCCAATGCTAACCAATTTGTTATTAGTTGGGGTCAAGACTTCGTCAACAAAATAAACTATACGAATGGAGATGAAATTTTGTTAGAACCTCGGGCCAAAATCCTATGTTTTAAGATTAACAAAGTTTCGGCTCTTAGAACTTATCCAGAAATGTCTAGTCAATATCGTTTCTATGGTAATTGTTAG

Coding sequence (CDS)

ATGGCTAACTGGTCGATTACAGAAACACTAAATGGAAGCAATTTCTTGCATCTAAGCTTGGATGCTGAAGAAATGTTAACTGAAGCGGGTTTTCTTCTTAACTATTTTCCAGAACTGTATGGGGAAGCAGAAATCGACATGTACGATATGGTTTCGCACAAATATTTTAAAGCAATCATGAGTAGGCTATCCAATGCTAACCAATTTGTTATTAGTTGGGGTCAAGACTTCGTCAACAAAATAAACTATACGAATGGAGATGAAATTTTGTTAGAACCTCGGGCCAAAATCCTATGTTTTAAGATTAACAAAGTTTCGGCTCTTAGAACTTATCCAGAAATGTCTAGTCAATATCGTTTCTATGGTAATTGTTAG

Protein sequence

MANWSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRLSNANQFVISWGQDFVNKINYTNGDEILLEPRAKILCFKINKVSALRTYPEMSSQYRFYGNC*

Homology

[Close]

BLAST of CSPI02G04830 vs. ExPASy TrEMBL
Match: A0A0A0LJ50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270130 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.0e-34
Identity = 79/120 (65.83%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 4   WSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRL 63
           WSITETL+GS  L L LDA EML E+ FLLNYFPE  G+A+I M+D+VS K FKA M R 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 64  SNANQFVISWGQDFVNKINYTNGDEILL--EPRAKILCFKINKVSALRTYPEMSSQYRFY 122
           S +NQF+I+W +DFV  INY NGDEILL  EP+ K LCF+I K SALRTYP+MS QYR Y
Sbjct: 68  SASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQMSGQYRSY 127

[Close]

BLAST of CSPI02G04830 vs. ExPASy TrEMBL
Match: A0A0A0LD04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G401960 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 9.7e-33
Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 4   WSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRL 63
           WSITETL+GS  L L LDA EML E+ FLLNYFPE  G+A+I M+D+VS K FKA M R 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 64  SNANQFVISWGQDFVNKINYTNGDEILL--EPRAKILCFKINKVSALRTYPEMSSQYRFY 122
           S +NQF+I+W +DFV  INY +GDEILL  EP+ K LCF+I + SALRTYP+MS QY  Y
Sbjct: 68  SASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQMSGQYHSY 127

[Close]

BLAST of CSPI02G04830 vs. NCBI nr
Match: KAE8651896.1 (hypothetical protein Csa_006487 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 6.2e-34
Identity = 79/120 (65.83%), Postives = 92/120 (76.67%), Query Frame = 0


Query: 4   WSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRL 63
           WSITETL+GS  L L LDA EML E+ FLLNYFPE  G+A+I M+D+VS K FKA M R 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQTGKAKITMFDVVSEKSFKATMERK 67

Query: 64  SNANQFVISWGQDFVNKINYTNGDEILL--EPRAKILCFKINKVSALRTYPEMSSQYRFY 122
           S +NQF+I+W +DFV  INY NGDEILL  EP+ K LCF+I K SALRTYP+MS QYR Y
Sbjct: 68  SASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQMSGQYRSY 127

[Close]

BLAST of CSPI02G04830 vs. NCBI nr
Match: KAE8651895.1 (hypothetical protein Csa_006112 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 2.0e-32
Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 4   WSITETLNGSNFLHLSLDAEEMLTEAGFLLNYFPELYGEAEIDMYDMVSHKYFKAIMSRL 63
           WSITETL+GS  L L LDA EML E+ FLLNYFPE  G+A+I M+D+VS K FKA M R 
Sbjct: 8   WSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSFKATMERK 67

Query: 64  SNANQFVISWGQDFVNKINYTNGDEILL--EPRAKILCFKINKVSALRTYPEMSSQYRFY 122
           S +NQF+I+W +DFV  INY +GDEILL  EP+ K LCF+I + SALRTYP+MS QY  Y
Sbjct: 68  SASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQMSGQYHSY 127

The following BLAST results are available for this feature:

BLAST of CSPI02G04830 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G04830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ50	3.0e-34	65.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270130 PE=4 SV=1	[more]
A0A0A0LD04	9.7e-33	63.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G401960 PE=4 SV=1	[more]

BLAST of CSPI02G04830 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651896.1	6.2e-34	65.83	hypothetical protein Csa_006487 [Cucumis sativus]	[more]
KAE8651895.1	2.0e-32	63.33	hypothetical protein Csa_006112 [Cucumis sativus]	[more]

BLAST of CSPI02G04830 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G04830.1	CSPI02G04830.1	mRNA