CSPI02G04490 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G04490
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPre-mRNA-splicing factor 38
LocationChr2: 3230981 .. 3234353 (-)
RNA-Seq ExpressionCSPI02G04490
SyntenyCSPI02G04490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAACTAAATACAAAATGGAGCATTCCCACTGATTATGATGTTTGTTCTTTCCCCCACTCGTATGACTCATTACGGCATTCTCTCCTCGTCCGGCTTTAAAATTAGGGTTTCGATCAATCTCCTCTGTCGATTTCCCCGTGCCCACACGGATTTCGCTGTTCTATAGCCGGTAGTTATGGCTAATCGGACAGACCCAGCTGCGAAAAGCATAAGGGGAACGAACCCCCAGAACCTAGTGGAGAAGATTCTTCGCTCCAAGATTTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTAACGGCGGAGACATTGGTCGATAAAGCCATGGAGCTCGACCACCTCGGCGGTACATATGGTGGCAACCGCAAGCCCACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTGATCGAGTTCATTAAGAATGAAGACTACAAGTAATTGTTATTGTCATTTTACTTCTCATTAAGTAAAACTCTGGATTGTTGTTATCTAGAAGCGTTTTGGATTAGGGTTAATTGAAAGGAACATTGCAATTGTGTGTTGTATATGGAGATTAAGAAAACCAGGGTTTTGCAAAGTTACTGCGAAAAATTTATGAAAACTAAATGCTCGTAGGTCAAAGAGTTTTTGCAGTTGATCAGTGAATGATCCTAGAATTTCTTTATGGGCCTGTCTTTGTTAGTATGATTAATAAGTATAAGAAATGGATGAACTATCAAGCTTATGGTTGAGCTATTTTAAGTACATTGGAAATGTGTTATTTATCTCATGGTTTTCTATGGTTCTTAAAGTGATAGTTCACTTGCCTTAGCTTGCGATGATTGCTTTGCTTTTTATACTTTGTGGTCTTCCAAATCCGTTCAGTTAATAAGTACGTTGTCTCAGTGAATTCTCTCTCTTGTAATTTCCTGAGAATGCTACTTTTGAAATTATATATATATATATATATTGTGACAGATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTATATCGTTACCTGGAACCTTTGTACAACGACTATCGGAAATTGAGGAGAAAATTAGCTGATGGATGTAAGTTACTGAGCCTCTTTTTGAATTTTATTTAATTAGTCATTGTGAAAACTAGTTGATTTTACATTCTGGTTGGAATATTGTATTTTTAGTTATGATCTCCTCTCTAAAATGAAGTTGTGAGGCTCAATCTTATTTTTATCAGGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGATGTAGCTCTGCCTCGTGTCAAAAAGAGGTATGGTACTGTTTACTCATTTGCCTATTTTCCAGTGGATTATTTTTCGAGTGGAAGTTGATAATATATTATTAGAATCAGGGAATTAGGAGAAATATTCATTATTCATTGTTTGATAAACAGAAGTACATGAATCACAAGTTCTAAATGTTGCTGTTCTGTTTTCTCTCTCTTGTATGTGTCTCTAGCGTTCAGTTTGGGTGTGATGTTTCCTTTGAAGTAACCTAAATATAAGACACACTTTGTAATGGCAGATGGACTCTTGAATCTGCTGGTTCATTGCCTCCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAGGAGGAGGCTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGAAAAGGTATTAACGCATTATCTATTTGTATGTAATAGCATCTTGTTTGCATTTTCTTATTCTTGTTAACCTGCTTGATATCTTGCATCTGCAGAATTATTATCGTGGAAGAAGTCCGGTGCGGGAGAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGTTCAATTCCCTGTTTGTTTTATTCATTTATGCTCCCTCCCTCTCCTCTCGGTTTTTATGGAGCAATGAAACTTTGATGCTCTTTCTGATTTTGTGAATATTTTCTCCTGTGGAGAATGCCATTATCTGATATTCCCTGTCTATTTGCTGCCTTTGATCCGTAGATCACCTTTTTTTCTGTTGTTGAATGTGAACAATAGTTTTCTAGATCAATATCAACAAATTTAGACTCAAAATTTGTGACTTACTTTAGTCTTTCTGATGCCGATGCAATTCTTTTAATGGAGTTGCTGATGACCGTTGAAAAATTAGATTGAACAAAATTAGAAGATGAATAGGAGAGTGGAAATTTTGGCATGGCATGAAGTTATTAGCATGTTTTGGAAATTGATAAGGAATTCATAACAAAACATGACCCATTTTGTTTTGTTTTGATTTTTTTTTTAATTACTTGGCTGGAAGCAGTTGAAATTTGTTAGTCTTGGATTGCTATTCGGACTTGTCATTTAACATTCGCATGTTTCTGTCACAACCATGGTATTTCAAGCCAATGGTTGCTTGCTGCTTCCTACAATAAATTCTTAAGATCCTGCCAGGTTTCTCTGTACTGACAGTGTGCAGCTGAGAAGTATGATGGATCGTACATATATTTGTCATAGTGATTTCATTTTCTCAATTGTACTTTTCCCATTGCATCGAAAGATTACGTGTTACTTAGATGTATTTTTGAGCTGTCTTACTACAATGTTCCATTGAGTGGGAACAATATTGATCTTTTGACACCGTATTTTCTTTTGTTTAATAACAGGGACCGAGATTATGATAGAGACCGAGACTATGATAGAGATCGGGGACGTGGAAGGGAAAGAGATAGAGATCGAGAAAGGGATCGGGATCGAGACAGGGAACGGGACAGAGATAGAGATAGGGATAGAGATAGAGATAGGGATAGGGATAGGGATCGCTATCGCCTAAGGGATGAGAAGGAATATGGTAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGATAGAGATCGTGGTAGAAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAAGATGGGGAGTACCGGAAGAGACACAGCCGTAGCAGTGTTAGTCCTAGAAGAAGGGACGGGGCGGAGGATAGGGAGGAACCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAAGAAGGTGGGGCAGGTGAGGAAGATCCGGAGATTGCAGAATGGAATAGGATTCGTGCTTCTCTTGGACTGGCACCTCTCAAGTAGATGGTTTTCTCTTCTTCAGTTTCAATGATATGTGAGTGAATTCTGTTTCATAAAGTATTGAAGTTAAAACTTGTTATCTATTAAAGTTTTGAGTTTGAGCCTTGTGGTTCTGATTTCTGTATAATATTAAATTTGCTGCTATGCTATTCTATTGCAATGTTGAATGATAGTATAAAATCACATTT

mRNA sequence

GAAACTAAATACAAAATGGAGCATTCCCACTGATTATGATGTTTGTTCTTTCCCCCACTCGTATGACTCATTACGGCATTCTCTCCTCGTCCGGCTTTAAAATTAGGGTTTCGATCAATCTCCTCTGTCGATTTCCCCGTGCCCACACGGATTTCGCTGTTCTATAGCCGGTAGTTATGGCTAATCGGACAGACCCAGCTGCGAAAAGCATAAGGGGAACGAACCCCCAGAACCTAGTGGAGAAGATTCTTCGCTCCAAGATTTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTAACGGCGGAGACATTGGTCGATAAAGCCATGGAGCTCGACCACCTCGGCGGTACATATGGTGGCAACCGCAAGCCCACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTGATCGAGTTCATTAAGAATGAAGACTACAAATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTATATCGTTACCTGGAACCTTTGTACAACGACTATCGGAAATTGAGGAGAAAATTAGCTGATGGATGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGATGTAGCTCTGCCTCGTGTCAAAAAGAGATGGACTCTTGAATCTGCTGGTTCATTGCCTCCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAGGAGGAGGCTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGAAAAGAATTATTATCGTGGAAGAAGTCCGGTGCGGGAGAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGGACCGAGATTATGATAGAGACCGAGACTATGATAGAGATCGGGGACGTGGAAGGGAAAGAGATAGAGATCGAGAAAGGGATCGGGATCGAGACAGGGAACGGGACAGAGATAGAGATAGGGATAGAGATAGAGATAGGGATAGGGATAGGGATCGCTATCGCCTAAGGGATGAGAAGGAATATGGTAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGATAGAGATCGTGGTAGAAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAAGATGGGGAGTACCGGAAGAGACACAGCCGTAGCAGTGTTAGTCCTAGAAGAAGGGACGGGGCGGAGGATAGGGAGGAACCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAAGAAGGTGGGGCAGGTGAGGAAGATCCGGAGATTGCAGAATGGAATAGGATTCGTGCTTCTCTTGGACTGGCACCTCTCAAGTAGATGGTTTTCTCTTCTTCAGTTTCAATGATATGTGAGTGAATTCTGTTTCATAAAGTATTGAAGTTAAAACTTGTTATCTATTAAAGTTTTGAGTTTGAGCCTTGTGGTTCTGATTTCTGTATAATATTAAATTTGCTGCTATGCTATTCTATTGCAATGTTGAATGATAGTATAAAATCACATTT

Coding sequence (CDS)

ATGGCTAATCGGACAGACCCAGCTGCGAAAAGCATAAGGGGAACGAACCCCCAGAACCTAGTGGAGAAGATTCTTCGCTCCAAGATTTACCAGAACACTTACTGGAAGGAACAATGTTTTGGGTTAACGGCGGAGACATTGGTCGATAAAGCCATGGAGCTCGACCACCTCGGCGGTACATATGGTGGCAACCGCAAGCCCACGCCGTTCATGTGTCTTGTCATGAAGATGCTCCAGATTCAGCCGGAGAAGGAAATCGTGATCGAGTTCATTAAGAATGAAGACTACAAATATGTTCGGGTTCTTGGTGCCTTTTACTTGCGTCTCACTGGGACTGATGTTGATGTATATCGTTACCTGGAACCTTTGTACAACGACTATCGGAAATTGAGGAGAAAATTAGCTGATGGATGTTTTTCTTTATCACACGTGGATGAAGTCATTGATGAACTTCTTACTAAAGATTATTCATGTGATGTAGCTCTGCCTCGTGTCAAAAAGAGATGGACTCTTGAATCTGCTGGTTCATTGCCTCCAAGGAAAAGTGCTTTAGAAGATGACTTTGAGGAGGAGGAAGAAAAGGAGGAGGCTGAGCCAATTAATGATTCTTTAGAAGATGATATTCATGAAAAGAATTATTATCGTGGAAGAAGTCCGGTGCGGGAGAGAGACAGAGACAGAAGGCGTGATAGTCACAGACACAGGGACCGAGATTATGATAGAGACCGAGACTATGATAGAGATCGGGGACGTGGAAGGGAAAGAGATAGAGATCGAGAAAGGGATCGGGATCGAGACAGGGAACGGGACAGAGATAGAGATAGGGATAGAGATAGAGATAGGGATAGGGATAGGGATCGCTATCGCCTAAGGGATGAGAAGGAATATGGTAGAGATCGAGATAGGGAAAGGGAAGGCAGGGAGCGGGAGAGACGAGATAGAGATCGTGGTAGAAGAAGGAGCCATTCAAGGAGCCGAAGTAGGAGTAAAGATCGGGAAGATGGGGAGTACCGGAAGAGACACAGCCGTAGCAGTGTTAGTCCTAGAAGAAGGGACGGGGCGGAGGATAGGGAGGAACCGAAGAAGAAGAAAGAAAAGAAGGAGAAAAAAGAAGGTGGGGCAGGTGAGGAAGATCCGGAGATTGCAGAATGGAATAGGATTCGTGCTTCTCTTGGACTGGCACCTCTCAAGTAG

Protein sequence

MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGTYGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPRKSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYDRDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK*
Homology
[Close]
BLAST of CSPI02G04490 vs. ExPASy Swiss-Prot
Match: Q8LB54 (Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 2.7e-126
Identity = 276/400 (69.00%), Postives = 312/400 (78.00%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRK+R+KL+DG FSL+HVDEVI+ELLTKDYSCD+A+PR+KKRWTLE  G L PR
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSP--VRERDRDRRRDSHRHRDRD 240
           KS LEDDFEEEEEKEE E I D  ED++ +    R +SP   RERDRDRRRDSHRHRDRD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMDQ----RRKSPERERERDRDRRRDSHRHRDRD 240

Query: 241 YDRDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGR 300
           YDRD D DRD       DRD ER+R   R+RDR+RDRD  R+RDRDR+R         GR
Sbjct: 241 YDRDYDMDRD------HDRDYERERGHGRDRDRERDRDHYRERDRDRER---------GR 300

Query: 301 DRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDRE 360
           DR+R+R         RDR RRRS SRSR           RKRH          D   DRE
Sbjct: 301 DRERDR---------RDRARRRSRSRSRD----------RKRH--------ETDDVRDRE 354

Query: 361 EPKKKKEKKEK-KEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           EPKKKKEKKEK KE G    +PEIAE NR+RASLG+ PL+
Sbjct: 361 EPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLR 354

[Close]
BLAST of CSPI02G04490 vs. ExPASy Swiss-Prot
Match: Q7JVL3 (Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 1.2e-65
Identity = 179/338 (52.96%), Postives = 224/338 (66.27%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   AK++ GTNPQ L+EKI+RS+IY + YWKEQCF LTAE LVDKAMEL  +GG 
Sbjct: 1   MANRTVKEAKNVHGTNPQYLIEKIIRSRIYDSKYWKEQCFALTAELLVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPT F+CL +KMLQIQPEK+IV+EFIKNE++KYVR LGAFYLRLTG  +D Y+YL
Sbjct: 61  YGGNIKPTQFLCLTLKMLQIQPEKDIVVEFIKNEEFKYVRALGAFYLRLTGAALDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLY D RKLRR+   G F + ++DE IDELL  D  CD+ LPR++KR  LE    + P+
Sbjct: 121 EPLYIDNRKLRRQNRAGQFEIVYMDEYIDELLRNDRVCDIILPRIQKRSILEENNEIEPK 180

Query: 181 KSALEDDFEEE--EEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDS---HRHR 240
            S L++D ++E   ++E+A+  N   E+    +   R RS  R R R+R R S   +  R
Sbjct: 181 VSVLDEDLDDELPSDEEKADETNRPKENSTAVRRPRRVRSKSRSRSRERERRSGQGNSAR 240

Query: 241 DRD-YDRDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEK 300
            RD YD   DYDR R R R RD   E   D DR ++  R  DR+R+R +DRD  R R+  
Sbjct: 241 SRDYYDELEDYDRQRNRVRNRDTHNE---DYDRRQNNGR-HDRERER-QDRDSIRERE-- 300

Query: 301 EYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDR 333
              RD DR+R  RERE R+RDRGR     R     +DR
Sbjct: 301 ---RDGDRDRRDRERE-RERDRGRHDQRERDSRGERDR 327

[Close]
BLAST of CSPI02G04490 vs. ExPASy Swiss-Prot
Match: Q0P5I6 (Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 8.6e-64
Identity = 163/323 (50.46%), Postives = 208/323 (64.40%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CD+ LPR++KR+ LE A  L PR
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLE---DDIHEKNYYRG-----RSPVRERDRDRRRDSH 240
            SALE+D ++ E  EE E  ++ LE      H +  YR      RSP     R R R S 
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSR-SP 240

Query: 241 RHRDRDYDRDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRD 300
           R R R   R     R     RER R +   R R R RDR     R R R +    +R   
Sbjct: 241 RRRSRSPKR-----RSPSPRRERHRSKSPRRHRSRSRDR-----RHRSRSKSPGHHRSHR 300

Query: 301 EKEYGRDRDREREGRERERRDRD 316
            + + +  +R ++  ++ RR  +
Sbjct: 301 HRSHSKSPERSKKSHKKSRRGNE 312

[Close]
BLAST of CSPI02G04490 vs. ExPASy Swiss-Prot
Match: Q8NAV1 (Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 8.6e-64
Identity = 163/323 (50.46%), Postives = 208/323 (64.40%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CD+ LPR++KR+ LE A  L PR
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLE---DDIHEKNYYRG-----RSPVRERDRDRRRDSH 240
            SALE+D ++ E  EE E  ++ LE      H +  YR      RSP     R R R S 
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSR-SP 240

Query: 241 RHRDRDYDRDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRD 300
           R R R   R     R     RER R +   R R R RDR     R R R +    +R   
Sbjct: 241 RRRSRSPKR-----RSPSPRRERHRSKSPRRHRSRSRDR-----RHRSRSKSPGHHRSHR 300

Query: 301 EKEYGRDRDREREGRERERRDRD 316
            + + +  +R ++  ++ RR  +
Sbjct: 301 HRSHSKSPERSKKSHKKSRRGNE 312

[Close]
BLAST of CSPI02G04490 vs. ExPASy Swiss-Prot
Match: Q8HXH6 (Pre-mRNA-splicing factor 38A OS=Macaca fascicularis OX=9541 GN=PRPF38A PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 8.6e-64
Identity = 163/323 (50.46%), Postives = 208/323 (64.40%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRT   A SI GTNPQ LVEKI+R++IY++ YWKE+CFGLTAE +VDKAMEL  +GG 
Sbjct: 1   MANRTVKDAHSIHGTNPQYLVEKIIRTRIYESKYWKEECFGLTAELVVDKAMELRFVGGV 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGN KPTPF+CL +KMLQIQPEK+I++EFIKNED+KYVR+LGA Y+RLTGT +D Y+YL
Sbjct: 61  YGGNIKPTPFLCLTLKMLQIQPEKDIIVEFIKNEDFKYVRMLGALYMRLTGTAIDCYKYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRK++ +  +G F L HVDE IDELL  +  CD+ LPR++KR+ LE A  L PR
Sbjct: 121 EPLYNDYRKIKSQNRNGEFELMHVDEFIDELLHSERVCDIILPRLQKRYVLEEAEQLEPR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLE---DDIHEKNYYRG-----RSPVRERDRDRRRDSH 240
            SALE+D ++ E  EE E  ++ LE      H +  YR      RSP     R R R S 
Sbjct: 181 VSALEEDMDDVESSEEEEEEDEKLERVPSPDHRRRSYRDLDKPRRSPTLRYRRSRSR-SP 240

Query: 241 RHRDRDYDRDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRD 300
           R R R   R     R     RER R +   R R R RDR     R R R +    +R   
Sbjct: 241 RRRSRSPKR-----RSPSPRRERHRSKSPRRHRSRSRDR-----RHRSRSKSPGHHRSHR 300

Query: 301 EKEYGRDRDREREGRERERRDRD 316
            + + +  +R ++  ++ RR  +
Sbjct: 301 HRSHSKSPERSKKSHKKSRRGNE 312

[Close]
BLAST of CSPI02G04490 vs. ExPASy TrEMBL
Match: A0A1S3BXB0 (Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1)

HSP 1 Score: 696.0 bits (1795), Expect = 8.9e-197
Identity = 381/397 (95.97%), Postives = 391/397 (98.49%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRRKL+DGCFSLSHVDEVIDELLTKDYSCD+ALPRVKKRWTLES+GSLPPR
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240

Query: 241 RDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDR 300
           RDRDYDRD  R R R R+R+RDR+RDR+R+RDRDRDR+R+RDRDRDRYRLRDEKEYGRDR
Sbjct: 241 RDRDYDRDYDRDRGRGRERDRDRERDRDRERDRDRDRERERDRDRDRYRLRDEKEYGRDR 300

Query: 301 DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDREEP 360
           DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDG EDREEP
Sbjct: 301 DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGVEDREEP 360

Query: 361 KKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           KKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 KKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 397

[Close]
BLAST of CSPI02G04490 vs. ExPASy TrEMBL
Match: A0A6J1G4M6 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 SV=1)

HSP 1 Score: 673.7 bits (1737), Expect = 4.7e-190
Identity = 375/405 (92.59%), Postives = 384/405 (94.81%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRRKLADGCFSL+HVDEVIDELLTKDYSCD+ALPRVKKRWTLES GSLP R
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDY+
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYE 240

Query: 241 R----DRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEY 300
           R    DRDYDRDRGRGRERDRDRERD      RDRDRDRDRDRDRDRDRDRY LRDEKEY
Sbjct: 241 RDRDNDRDYDRDRGRGRERDRDRERD------RDRDRDRDRDRDRDRDRDRYHLRDEKEY 300

Query: 301 GRDRDREREG----RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRD 360
           GRDRDREREG    RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SPRRR+
Sbjct: 301 GRDRDREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRRRN 360

Query: 361 GAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           GAEDREEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 GAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 399

[Close]
BLAST of CSPI02G04490 vs. ExPASy TrEMBL
Match: A0A6J1FBK8 (Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 SV=1)

HSP 1 Score: 671.8 bits (1732), Expect = 1.8e-189
Identity = 371/400 (92.75%), Postives = 386/400 (96.50%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRR+LADGCFSL+HVDEVIDELLTKDYSCD+ALPRVKKRW LES GSLP R
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EPIND+LED+IHEKNYYRGRSPVRERD+DRR DSHRHRDRDYD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRERDKDRRHDSHRHRDRDYD 240

Query: 241 RDRDYDR--DRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGR 300
           RDRDYDR  DR RGR R+RDR+RDRDRDR+RDRDRDR RDRDRDRDRDRYRLRD+KEY R
Sbjct: 241 RDRDYDRDYDRDRGRGRERDRDRDRDRDRDRDRDRDRGRDRDRDRDRDRYRLRDDKEYSR 300

Query: 301 DRDREREGRERERRDRD-RGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDR 360
           DRDREREGRERERRDRD  GRRRSHSRSRSRSKDREDGEYRKRH+RSS SPRRRDGAEDR
Sbjct: 301 DRDREREGRERERRDRDHHGRRRSHSRSRSRSKDREDGEYRKRHARSSASPRRRDGAEDR 360

Query: 361 EEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           +EPK+KKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 DEPKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 400

[Close]
BLAST of CSPI02G04490 vs. ExPASy TrEMBL
Match: A0A6J1KGY3 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111493773 PE=3 SV=1)

HSP 1 Score: 664.5 bits (1713), Expect = 2.9e-187
Identity = 367/401 (91.52%), Postives = 378/401 (94.26%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAK+IRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKNIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRRKLADGCFSL+H+DEVIDELLTKDYSCD+ALPRVKKRWTLES+GSLP R
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHMDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EPINDSLE DIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDY+
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEGDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYE 240

Query: 241 RDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDR 300
           RDRD DRDRGRGRERDRDRE          RDRDRDRDRDRDRDRDRY LRDEKEYGRDR
Sbjct: 241 RDRDIDRDRGRGRERDRDRE----------RDRDRDRDRDRDRDRDRYHLRDEKEYGRDR 300

Query: 301 DREREG----RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAED 360
           DREREG    RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSSVSPRRR+G ED
Sbjct: 301 DREREGRERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSVSPRRRNGVED 360

Query: 361 REEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           REEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 REEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 391

[Close]
BLAST of CSPI02G04490 vs. ExPASy TrEMBL
Match: A0A6J1HPQ9 (Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=1)

HSP 1 Score: 660.6 bits (1703), Expect = 4.1e-186
Identity = 366/398 (91.96%), Postives = 381/398 (95.73%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  HGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRR+LADGCFSL+HVDEVIDELLTKDYSCD+ALPRVKKRW LES GSLP R
Sbjct: 121 EPLYNDYRKLRRQLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWNLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EPIND+LED+IHEKNYYRGRSPVRERD+DRRRDSHRHRDRDYD
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDALEDEIHEKNYYRGRSPVRERDKDRRRDSHRHRDRDYD 240

Query: 241 RDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDR 300
           RDRDYDRD    R+R R RERDRDRDR+RDRDRDRDR RDRDRDRDRYRLRD+KEY RDR
Sbjct: 241 RDRDYDRD--YDRDRGRGRERDRDRDRDRDRDRDRDRGRDRDRDRDRYRLRDDKEYSRDR 300

Query: 301 DREREGRERERRDRD-RGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDREE 360
           D EREGRERERRDRD  GRRRSHSR+RSRSKDREDGEYRKRH+R S SPRRRDGAEDR+E
Sbjct: 301 DGEREGRERERRDRDHHGRRRSHSRNRSRSKDREDGEYRKRHARCSASPRRRDGAEDRDE 360

Query: 361 PKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           PK+KKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 PKRKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 396

[Close]
BLAST of CSPI02G04490 vs. NCBI nr
Match: XP_031737285.1 (pre-mRNA-splicing factor 38 [Cucumis sativus] >KAE8651621.1 hypothetical protein Csa_021262 [Cucumis sativus])

HSP 1 Score: 711.4 bits (1835), Expect = 4.2e-201
Identity = 397/407 (97.54%), Postives = 397/407 (97.54%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240

Query: 241 R----DRDYDRDRGRGRERDRDRERDRDRDRE------RDRDRDRDRDRDRDRDRDRYRL 300
           R    DRDYDRDRGRGRERDRDRERDRDRDRE      RDRDRDRDRDRDRDRDRDRYRL
Sbjct: 241 RDRDYDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRDRDRDRYRL 300

Query: 301 RDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRR 360
           RDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRR
Sbjct: 301 RDEKEYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRR 360

Query: 361 RDGAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           RDGAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 RDGAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 407

[Close]
BLAST of CSPI02G04490 vs. NCBI nr
Match: XP_038890973.1 (pre-mRNA-splicing factor 38 [Benincasa hispida])

HSP 1 Score: 699.5 bits (1804), Expect = 1.7e-197
Identity = 388/403 (96.28%), Postives = 395/403 (98.01%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRRKLADGCF+LSHVDEVIDELLTKDYSCD+ALPRVKKRWTLES+GSLP R
Sbjct: 121 EPLYNDYRKLRRKLADGCFALSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240

Query: 241 R----DRDYDRDRGRGRERDRDRE--RDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEK 300
           R    DRDYDRDRGRGRERDRDRE  RDRDRDR+RDRDRDRDRDRDRDRDRDR+RLRDEK
Sbjct: 241 RDRDYDRDYDRDRGRGRERDRDRERDRDRDRDRDRDRDRDRDRDRDRDRDRDRHRLRDEK 300

Query: 301 EYGRDRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGA 360
           EYGRDRDREREGRERERRDRDRGRRRSHS+SRSRSKDREDGEYRKRHSRSSVSPRRRDGA
Sbjct: 301 EYGRDRDREREGRERERRDRDRGRRRSHSKSRSRSKDREDGEYRKRHSRSSVSPRRRDGA 360

Query: 361 EDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           EDREEP+KKKEKKEKKE GAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 EDREEPRKKKEKKEKKEAGAGEEDPEIAEWNRIRASLGLAPLK 403

[Close]
BLAST of CSPI02G04490 vs. NCBI nr
Match: XP_008453888.1 (PREDICTED: pre-mRNA-splicing factor 38 [Cucumis melo])

HSP 1 Score: 696.0 bits (1795), Expect = 1.8e-196
Identity = 381/397 (95.97%), Postives = 391/397 (98.49%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRRKL+DGCFSLSHVDEVIDELLTKDYSCD+ALPRVKKRWTLES+GSLPPR
Sbjct: 121 EPLYNDYRKLRRKLSDGCFSLSHVDEVIDELLTKDYSCDIALPRVKKRWTLESSGSLPPR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD
Sbjct: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240

Query: 241 RDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDR 300
           RDRDYDRD  R R R R+R+RDR+RDR+R+RDRDRDR+R+RDRDRDRYRLRDEKEYGRDR
Sbjct: 241 RDRDYDRDYDRDRGRGRERDRDRERDRDRERDRDRDRERERDRDRDRYRLRDEKEYGRDR 300

Query: 301 DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDREEP 360
           DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDG EDREEP
Sbjct: 301 DREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGVEDREEP 360

Query: 361 KKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           KKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK
Sbjct: 361 KKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 397

[Close]
BLAST of CSPI02G04490 vs. NCBI nr
Match: KAG6599199.1 (Pre-mRNA-splicing factor 38, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 676.4 bits (1744), Expect = 1.5e-190
Identity = 378/409 (92.42%), Postives = 386/409 (94.38%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRRKLADGCFSL+HVDEVIDELLTKDYSCD+ALPRVKKRWTLES GSLP R
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDY+
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYE 240

Query: 241 R----DRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEY 300
           R    DRDYDRDRGRGRERDRDRERDRD    RDRDRDRDRDRDRDRDRDRY LRDEKEY
Sbjct: 241 RDRDNDRDYDRDRGRGRERDRDRERDRD----RDRDRDRDRDRDRDRDRDRYHLRDEKEY 300

Query: 301 GRDRDREREG--------RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSP 360
           GRDRDREREG        RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSS+SP
Sbjct: 301 GRDRDREREGRERERERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSISP 360

Query: 361 RRRDGAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           RRR+GAEDREEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 RRRNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 405

[Close]
BLAST of CSPI02G04490 vs. NCBI nr
Match: KAG7030134.1 (Pre-mRNA-splicing factor 38 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 676.0 bits (1743), Expect = 2.0e-190
Identity = 377/407 (92.63%), Postives = 386/407 (94.84%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDPAAKSIRGTNPQNLVEKILRSKIYQN YWKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNNYWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL
Sbjct: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRKLRRKLADGCFSL+HVDEVIDELLTKDYSCD+ALPRVKKRWTLES GSLP R
Sbjct: 121 EPLYNDYRKLRRKLADGCFSLTHVDEVIDELLTKDYSCDIALPRVKKRWTLESTGSLPAR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYD 240
           KSALEDDFEEEEEKE+ EPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDY+
Sbjct: 181 KSALEDDFEEEEEKEDVEPINDSLEDDIHEKNYYRGRSPVRERDRDRRRDSHRHRDRDYE 240

Query: 241 R----DRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEY 300
           R    DRDYDRDRGRGRERDRDRERDRD    RDRDRDRDRDRDRDRDRDRY LRDEKEY
Sbjct: 241 RDRDNDRDYDRDRGRGRERDRDRERDRD----RDRDRDRDRDRDRDRDRDRYHLRDEKEY 300

Query: 301 GRDRDREREG------RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRR 360
           GRDRDREREG      RERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRH+RSS+SPRR
Sbjct: 301 GRDRDREREGRERERERERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHTRSSISPRR 360

Query: 361 RDGAEDREEPKKKKEKKEKKEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           R+GAEDREEPK+KKEKKEKK  GAGEEDPEIAEWNRIRASLG+APLK
Sbjct: 361 RNGAEDREEPKRKKEKKEKKGDGAGEEDPEIAEWNRIRASLGMAPLK 403

[Close]
BLAST of CSPI02G04490 vs. TAIR 10
Match: AT2G40650.1 (PRP38 family protein )

HSP 1 Score: 453.4 bits (1165), Expect = 1.9e-127
Identity = 276/400 (69.00%), Postives = 312/400 (78.00%), Query Frame = 0 

Query: 1   MANRTDPAAKSIRGTNPQNLVEKILRSKIYQNTYWKEQCFGLTAETLVDKAMELDHLGGT 60
           MANRTDP AK+IRGTNPQNLVEKI+R+KIYQ+T+WKEQCFGLTAETLVDKAMELDHLGGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFMCLVMKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYL 120
           +GG+RKPTPF+CL++KMLQIQPEKEIV+EFIKN+DYKYVR+LGAFYLRLTGTDVDVYRYL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKLRRKLADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPR 180
           EPLYNDYRK+R+KL+DG FSL+HVDEVI+ELLTKDYSCD+A+PR+KKRWTLE  G L PR
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 KSALEDDFEEEEEKEEAEPINDSLEDDIHEKNYYRGRSP--VRERDRDRRRDSHRHRDRD 240
           KS LEDDFEEEEEKEE E I D  ED++ +    R +SP   RERDRDRRRDSHRHRDRD
Sbjct: 181 KSVLEDDFEEEEEKEENEGIADGSEDEMDQ----RRKSPERERERDRDRRRDSHRHRDRD 240

Query: 241 YDRDRDYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGR 300
           YDRD D DRD       DRD ER+R   R+RDR+RDRD  R+RDRDR+R         GR
Sbjct: 241 YDRDYDMDRD------HDRDYERERGHGRDRDRERDRDHYRERDRDRER---------GR 300

Query: 301 DRDREREGRERERRDRDRGRRRSHSRSRSRSKDREDGEYRKRHSRSSVSPRRRDGAEDRE 360
           DR+R+R         RDR RRRS SRSR           RKRH          D   DRE
Sbjct: 301 DRERDR---------RDRARRRSRSRSRD----------RKRH--------ETDDVRDRE 354

Query: 361 EPKKKKEKKEK-KEGGAGEEDPEIAEWNRIRASLGLAPLK 398
           EPKKKKEKKEK KE G    +PEIAE NR+RASLG+ PL+
Sbjct: 361 EPKKKKEKKEKMKEDGTDHPNPEIAEMNRLRASLGMKPLR 354

[Close]
BLAST of CSPI02G04490 vs. TAIR 10
Match: AT5G37370.1 (PRP38 family protein )

HSP 1 Score: 46.6 bits (109), Expect = 5.4e-05
Identity = 100/332 (30.12%), Postives = 158/332 (47.59%), Query Frame = 0 

Query: 18  QNLVEKILRSKIYQNTYWKEQCFGL-TAETLVDKAM-ELDHLGGTYGGN-RKPTPFMCLV 77
           ++L+EK+L   I  + Y+KE  +GL T   ++D+   +++H+    GGN R P+   CL+
Sbjct: 12  ESLLEKVLSMNILSSDYFKE-LYGLKTYHEVIDEIYNQVNHVEPWMGGNCRGPSTAYCLL 71

Query: 78  MKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKL 137
            K   ++   + +   +K+ D  Y+R +G  YLR       ++ + EP   D  +     
Sbjct: 72  YKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDDEEFSPG- 131

Query: 138 ADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAG-----SLPPRKSALEDDFE 197
           ++G   ++ +   + +LL   Y  D   PR+      +        +LP + S    D  
Sbjct: 132 SNG--RMTTMGVYVRDLLLGLYYFDTLFPRIPVPVMRQIVSNLEKMNLPTKPSGSTGDMT 191

Query: 198 EEEEKEEAEP--INDSLEDDIHEKNYY----RGRSPVRERDRDRRRDSHRHRDRDYDRDR 257
              E     P  +  SL     ++  +    RG SPVR           R     YDR+ 
Sbjct: 192 RGSEDTARRPPSVKASLSVSFGQRAPHRASTRGSSPVR-----------RPPPTGYDRNG 251

Query: 258 DYDRDRGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDRE 317
             D  + R   R + R+   DRD +R R+R+R++DR+R+R RDRYR R E++YG DR   
Sbjct: 252 G-DEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERERGRDRYRER-ERDYGNDRRSR 311

Query: 318 REGRERERR-----DRDRGRRRSHSRSRSRSK 331
           R+   R RR     DR R  RRS SRSRSRS+
Sbjct: 312 RDYDSRSRRNDYEDDRSRHDRRSRSRSRSRSR 326

[Close]
BLAST of CSPI02G04490 vs. TAIR 10
Match: AT5G37370.2 (PRP38 family protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.2e-04
Identity = 98/327 (29.97%), Postives = 157/327 (48.01%), Query Frame = 0 

Query: 18  QNLVEKILRSKIYQNTYWKEQCFGL-TAETLVDKAM-ELDHLGGTYGGN-RKPTPFMCLV 77
           ++L+EK+L   I  + Y+KE  +GL T   ++D+   +++H+    GGN R P+   CL+
Sbjct: 12  ESLLEKVLSMNILSSDYFKE-LYGLKTYHEVIDEIYNQVNHVEPWMGGNCRGPSTAYCLL 71

Query: 78  MKMLQIQPEKEIVIEFIKNEDYKYVRVLGAFYLRLTGTDVDVYRYLEPLYNDYRKLRRKL 137
            K   ++   + +   +K+ D  Y+R +G  YLR       ++ + EP   D  +     
Sbjct: 72  YKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDDEEFSPG- 131

Query: 138 ADGCFSLSHVDEVIDELLTKDYSCDVALPRVKKRWTLESAGSLPPRKSALEDDFEEEEEK 197
           ++G  +   V    D L  +     + +P +++  +     +LP + S    D     E 
Sbjct: 132 SNGRMTTMGVYYYFDTLFPR-----IPVPVMRQIVSNLEKMNLPTKPSGSTGDMTRGSED 191

Query: 198 EEAEP--INDSLEDDIHEKNYY----RGRSPVRERDRDRRRDSHRHRDRDYDRDRDYDRD 257
               P  +  SL     ++  +    RG SPVR           R     YDR+   D  
Sbjct: 192 TARRPPSVKASLSVSFGQRAPHRASTRGSSPVR-----------RPPPTGYDRNGG-DEV 251

Query: 258 RGRGRERDRDRERDRDRDRERDRDRDRDRDRDRDRDRDRYRLRDEKEYGRDRDREREGRE 317
           + R   R + R+   DRD +R R+R+R++DR+R+R RDRYR R E++YG DR   R+   
Sbjct: 252 QQRSPRRSQSRDYYSDRDSDRQREREREKDRERERGRDRYRER-ERDYGNDRRSRRDYDS 311

Query: 318 RERR-----DRDRGRRRSHSRSRSRSK 331
           R RR     DR R  RRS SRSRSRS+
Sbjct: 312 RSRRNDYEDDRSRHDRRSRSRSRSRSR 318

The following BLAST results are available for this feature:
BLAST of CSPI02G04490 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LB542.7e-12669.00Pre-mRNA-splicing factor 38 OS=Arabidopsis thaliana OX=3702 GN=PRP38 PE=1 SV=1[more]
Q7JVL31.2e-6552.96Pre-mRNA-splicing factor 38 OS=Drosophila melanogaster OX=7227 GN=Prp38 PE=1 SV=... [more]
Q0P5I68.6e-6450.46Pre-mRNA-splicing factor 38A OS=Bos taurus OX=9913 GN=PRPF38A PE=2 SV=1[more]
Q8NAV18.6e-6450.46Pre-mRNA-splicing factor 38A OS=Homo sapiens OX=9606 GN=PRPF38A PE=1 SV=1[more]
Q8HXH68.6e-6450.46Pre-mRNA-splicing factor 38A OS=Macaca fascicularis OX=9541 GN=PRPF38A PE=2 SV=1[more]
BLAST of CSPI02G04490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BXB08.9e-19795.97Pre-mRNA-splicing factor 38 OS=Cucumis melo OX=3656 GN=LOC103494470 PE=3 SV=1[more]
A0A6J1G4M64.7e-19092.59Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111450740 PE=3 S... [more]
A0A6J1FBK81.8e-18992.75Pre-mRNA-splicing factor 38 OS=Cucurbita moschata OX=3662 GN=LOC111443943 PE=3 S... [more]
A0A6J1KGY32.9e-18791.52Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111493773 PE=3 SV=... [more]
A0A6J1HPQ94.1e-18691.96Pre-mRNA-splicing factor 38 OS=Cucurbita maxima OX=3661 GN=LOC111465574 PE=3 SV=... [more]
BLAST of CSPI02G04490 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031737285.14.2e-20197.54pre-mRNA-splicing factor 38 [Cucumis sativus] >KAE8651621.1 hypothetical protein... [more]
XP_038890973.11.7e-19796.28pre-mRNA-splicing factor 38 [Benincasa hispida][more]
XP_008453888.11.8e-19695.97PREDICTED: pre-mRNA-splicing factor 38 [Cucumis melo][more]
KAG6599199.11.5e-19092.42Pre-mRNA-splicing factor 38, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7030134.12.0e-19092.63Pre-mRNA-splicing factor 38 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CSPI02G04490 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G40650.11.9e-12769.00PRP38 family protein [more]
AT5G37370.15.4e-0530.12PRP38 family protein [more]
AT5G37370.21.2e-0429.97PRP38 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 10..173
e-value: 8.6E-61
score: 204.9
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 1..390
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..397
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 327..384
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 204..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 295..315
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..283
NoneNo IPR availablePANTHERPTHR23142:SF1PRE-MRNA-SPLICING FACTOR 38Acoord: 1..390

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G04490.1CSPI02G04490.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0071011 precatalytic spliceosome