CSPI02G04040 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G04040
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	50S ribosomal protein L27-like
Location	Chr2: 2817028 .. 2820117 (-)
RNA-Seq Expression	CSPI02G04040
Synteny	CSPI02G04040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTTCTCACCTGCGATTCACGAACGGTCACCACCACCGTCCTACTTCTTCATTCGGCGATTCACGAACCACACCACCACCTTCAGTTTTTTCGCTGCCTCCGTCGCGGCCGCCGTTCAAGGTTTGTCTTTTCATTTCTGTCTTCATTTCCATAACTTATTTGTTTCAACTTCAATTTTCTAGTTAAAATTTAATTTAAGTTTGATTTAGAAATATGTTCAACTAAATTTGCATCTTAACAATTAACACAAAGCTTTTTTTTTTAGTAGATTACATTTCTATCCTAGTTTTTTTGGAGATTAGTGTATCACTGTCATCGTATCTCTACCTTATATCAGTGTCAACACTTTTTAGTTTTCAAATCTAGAAAGCATTTTTTTAAATAAATATTTTCACCAAAACCTTGATGAAGGTCTATAGTGATCATGATTTTTTTAGTTTTTCCATTCACTAGTTACACGGGTTTGGATTCATTTCTCACCAAAATTTTTACATTTAGATTAGAATCAGGGAAGTCCCTGTTGACTATGTCAAATGTCATCTCTGTGGTCAAGTTAAATTATTCTATCTTTTTCCTTCAATTTCCATTCATCAATAGATTTGTTAGCGATGGGGAAGGTTTCTAGTATTTGCCTACCGTTATCAAGGTTGATTGAAATTCCATATTAGTGTACAGGAGGAATGAGGATGTATTTGAGTACTTTTAAATGCACTCTACCTGCAATCTTACTTGCATACAGATAAGACTGATAAGTGATAACTGATAGGTTTGTTGTCATTGTCGGATTTGGCATCTCCTTCTTCAGTGCAAATTTAAGTTTCATTGAGTCTATCATAAAAGATCAATTTTCAATAAAGTCATGGAACTCTGTCGGGTTAGGTTATGTTCGATGATGCTCTATGAGTTTTTTAGAACTTCAACTGTGTAGAAAACTTATTTTTCCTCTAACTGGTGACTACTAGCTGTCTTTTCTAGTCAGCTTAGGGCTATTTTTTGCTTTAGTGTAAGATCCATTTCTTGAAAGGAAGTAAGAACCTCCTGTTAGTGTTGAGCTGATTATTAACTTCTATAAGTTCAGTCTTGATTTCCACTGTCGTGGAATTTTTTTTAAGTTCACTGTCATGGAATTAAGGCCCCATTTTGAAAGAAAAAACAAAATGGTTATCAAATGTGGCCCAAGTTTTTTTGATTTTTGAAATCCTCCAATTTTGTTGTTACATAATAGTTAATAGTGTTTTCCATTAAGAAAAGAAAAGAAAAGAAATAGATCTAATAATGCCTAATAGATCTAATAATGCCTAGTGAGTATTGTATGATAGAACCTAAACAACTAGAACATTGTCCAAATATTATTCTTACTCAACAGTCAAGCCTACAGCCAGAAAACAATGGTATCTTCCTCTCTTCCCACTCTCTCTATATATAATCAATTCTAATAATTTTTACAACTCAAGGGCACAATTCTACAACCTATAGAACAACTCCTGTTCAAATAAGTTAGTTACATAATCAATTCAAATTGCATACTCTTTGGATAATTACTCTTATGAATTTAATAATTATTTTACTTGTTTGGTAAGCAAATTTTTTTCTTCTTTAATTTTATTATATAAATTGTTGTGTGCTTTTGCTAGGCATTGGTTGAAGCATTTGAATGGAAATCTACACTTTCACTTTGGTTTGCAATATCCGTGTCTGTTTCTTGAATTTGAGTTGTTAACCATGAAGGATTTAAATGATGTAACCTTTTGAAAAAGTTGTTGGAGGTTTGTTACAAAGTTTTTCATAAGATATTAATAGTTGGCCATGGCCTGTTATTAGAATATGCAGGTAGCTTCTTGAACTAGATTATGTAATATATGGTAGATTTATATTGGAAGTTGTTCATTTGATCTTGTTGAACTATGTTTTACATGTGTTAAGTATCTTGTGACATTTTCAGGATAAACTACATATACATACAACCATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGGTAAGAATGGTTCATCCAGAACATGTTGTGTACTTATCATGCTAATTTGTCTTCATATTTTGGTGATTACATTGTTTGTTGAATCTAATCTCAGATGGAGCTACTACTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACTAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGGTGAGTGGCAGGAAAAACAAAAATCACATTGTCATAAATCTTGCACTGAAATTTCTATTTATTGAAGCGGTTTTGTTGTTAACTTATTTACGGAGAGTTATTCCTTCTGGATACAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAGGAAGGCAATGTCAAGTTCGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAATCTTTGGTGCTCTGTTGAAGAACATGATCGGCAATGGTACAAATTTTCCTGTTGTTTGTCATGGTCCACACCAAATTTTAACCAAACTCGATCGCCTCGGGAGGAGGGGATGTAGGCAGTCTCTTTAAGCGCCTGTTTTTAATGTTTTATTATTTCTTTTTCTGGAAAGGCTATTGGATGTCACTTTAACCAATATGGATACGATGGATGTCCGCGTCCGCTTCTAGCTCGACCCGCTTAAAAATCTGACGGTGAAGAGAGAAATTTCCATTGTAATTATGTTGCCTCTTTTTTAAGCAAGTGAAGATGCGCGAAGAATTATAGGTGTACTCCGAGTGAATTTCAGGCCCTCTTTTAACCTCCTCCCCTAGCAAGGAATATTTTCTCTATTGACATTTCAAATAGTTGGTTTAATAATATTTTCTCTATTGACATTAGTCTTTACAAATCAATCTTCTGATAGCA

mRNA sequence

CATCTTCTCACCTGCGATTCACGAACGGTCACCACCACCGTCCTACTTCTTCATTCGGCGATTCACGAACCACACCACCACCTTCAGTTTTTTCGCTGCCTCCGTCGCGGCCGCCGTTCAAGGATAAACTACATATACATACAACCATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGATGGAGCTACTACTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACTAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAGGAAGGCAATGTCAAGTTCGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAATCTTTGGTGCTCTGTTGAAGAACATGATCGGCAATGGTACAAATTTTCCTGTTGTTTGTCATGGTCCACACCAAATTTTAACCAAACTCGATCGCCTCGGGAGGAGGGGATGTAGGCAGTCTCTTTAAGCGCCTGTTTTTAATGTTTTATTATTTCTTTTTCTGGAAAGGCTATTGGATGTCACTTTAACCAATATGGATACGATGGATGTCCGCGTCCGCTTCTAGCTCGACCCGCTTAAAAATCTGACGGTGAAGAGAGAAATTTCCATTGTAATTATGTTGCCTCTTTTTTAAGCAAGTGAAGATGCGCGAAGAATTATAGGTGTACTCCGAGTGAATTTCAGGCCCTCTTTTAACCTCCTCCCCTAGCAAGGAATATTTTCTCTATTGACATTTCAAATAGTTGGTTTAATAATATTTTCTCTATTGACATTAGTCTTTACAAATCAATCTTCTGATAGCA

Coding sequence (CDS)

ATGCTTAATATTGCGACCACGTTTTGCAAGCGACTGAATGTCAAGGATTTGGTGACCAATGTTCCTGTCTATAGCAGTTTTAGTGATGGAGCTACTACTGGATTAAACTTATTATTCAGACGTTGGGCTACCAAAAAGACAGCTGGATCAACTAAAAATGGACGAGACTCGAATCCCAAGTATCTTGGTGTAAAGAAATTTGGTGGGGAGAGAGTTATTCCCGGTAACATTATTGTTCGTCAACGGGGCACTCGGTTTCATCCTGGAGATTATGTTGGAATAGGGAAGGATCACACTCTTTTTGCCCTTAAGGAAGGCAATGTCAAGTTCGAAAAGAACAAGCTGAGCGGGCGTAAGTGGGTACACGTTATACCGAAGGAAGGGCACGTTCTTCATCCTGTTTATGAAACTACTTCTACTTCTCTACAATTGAAGACAGCAGCATAA

Protein sequence

MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKWVHVIPKEGHVLHPVYETTSTSLQLKTAA*

Homology

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BLAST of CSPI02G04040 vs. ExPASy Swiss-Prot
Match: A9IM57 (50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) OX=382640 GN=rpmA PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.0e-25
Identity = 59/83 (71.08%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVIP 126
           L EG V F++ K   R +V VIP
Sbjct: 62  LSEGKVSFQR-KAGNRSYVSVIP 83

[Close]

BLAST of CSPI02G04040 vs. ExPASy Swiss-Prot
Match: Q6G507 (50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) OX=283166 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.8e-25
Identity = 58/83 (69.88%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGTR+HPGD VGIGKDHTLFA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVIP 126
           L +G V F++ K + R +V VIP
Sbjct: 62  LSKGMVSFQR-KANNRSYVSVIP 83

[Close]

BLAST of CSPI02G04040 vs. ExPASy Swiss-Prot
Match: B4RZH4 (50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / Deep ecotype) OX=1774373 GN=rpmA PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.5e-25
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GSTKNGRDS  K LGVK+FGGE V+ GNIIVRQRGTRFH GD +GIGKDHTLFA
Sbjct: 2   AHKKAGGSTKNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTRFHAGDNMGIGKDHTLFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVI 125
           LK+G V+F+      RK+V ++
Sbjct: 62  LKDGKVQFDVKGPKNRKFVSIV 83

[Close]

BLAST of CSPI02G04040 vs. ExPASy Swiss-Prot
Match: Q8UBR6 (50S ribosomal protein L27 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.5e-25
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS  K LGVKKFGGE VIPGNII+RQRGT++HPG  VGIGKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGEAVIPGNIILRQRGTQWHPGANVGIGKDHTIFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVIPK 127
           L  GNV F + K +GR +V V PK
Sbjct: 62  LTAGNVNF-RTKANGRVFVSVAPK 84

[Close]

BLAST of CSPI02G04040 vs. ExPASy Swiss-Prot
Match: A6UDV3 (50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=rpmA PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 8.5e-25
Identity = 57/84 (67.86%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK  GS++NGRDS  K LGVKKFGGE VI GNIIVRQRGT++HPG  VG+GKDHT+FA
Sbjct: 2   AHKKAGGSSRNGRDSESKRLGVKKFGGENVIAGNIIVRQRGTKWHPGANVGLGKDHTIFA 61

Query: 103 LKEGNVKFEKNKLSGRKWVHVIPK 127
           L  GNV F K K +GR +V V+PK
Sbjct: 62  LTAGNVDFRK-KANGRVYVSVMPK 84

[Close]

BLAST of CSPI02G04040 vs. ExPASy TrEMBL
Match: A0A0A0LIQ3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.1e-79
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAT GLNLLFRRWATKKTAGSTKNGRDSNPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
           YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VHVIPKEGHVLHPVYETTSTSLQLKTAA
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 148

[Close]

BLAST of CSPI02G04040 vs. ExPASy TrEMBL
Match: A0A5A7TXR2 (50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00530 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.3e-75
Identity = 140/148 (94.59%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAT GLNLLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK+KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VHVIPK+GHVLHPVY TTSTS QLKT A
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]

BLAST of CSPI02G04040 vs. ExPASy TrEMBL
Match: A0A1S4E0A6 (50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 9.3e-75
Identity = 140/148 (94.59%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAT GLNLLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK+KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VHVIPK+GHVLHPVY TTSTS QLKT A
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]

BLAST of CSPI02G04040 vs. ExPASy TrEMBL
Match: A0A6J1I390 (uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 3.7e-71
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK+KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VH+IPKEGHVLHPVY TT  S +LKTAA
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAA 148

[Close]

BLAST of CSPI02G04040 vs. ExPASy TrEMBL
Match: A0A6J1HP14 (uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC111464705 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.9e-70
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK+KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTA 148
           VH+IPKEGHVLHPVY TT  S +LKTA
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTA 147

[Close]

BLAST of CSPI02G04040 vs. NCBI nr
Match: XP_004139171.1 (uncharacterized protein LOC101207653 [Cucumis sativus] >KGN60919.1 hypothetical protein Csa_023482 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 4.4e-79
Identity = 147/148 (99.32%), Postives = 147/148 (99.32%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAT GLNLLFRRWATKKTAGSTKNGRDSNPK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSNPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
           YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW
Sbjct: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VHVIPKEGHVLHPVYETTSTSLQLKTAA
Sbjct: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 148

[Close]

BLAST of CSPI02G04040 vs. NCBI nr
Match: XP_016901663.1 (PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribosomal protein L27-like [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 140/148 (94.59%), Postives = 142/148 (95.95%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDGAT GLNLLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATAGLNLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEK+KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VHVIPK+GHVLHPVY TTSTS QLKT A
Sbjct: 121 VHVIPKDGHVLHPVYATTSTSPQLKTTA 148

[Close]

BLAST of CSPI02G04040 vs. NCBI nr
Match: XP_022970580.1 (uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharacterized protein LOC111469515 [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 7.6e-71
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSFSDG+  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK+KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTAA 149
           VH+IPKEGHVLHPVY TT  S +LKTAA
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTAA 148

[Close]

BLAST of CSPI02G04040 vs. NCBI nr
Match: XP_038877023.1 (50S ribosomal protein L27-like [Benincasa hispida])

HSP 1 Score: 274.2 bits (700), Expect = 6.4e-70
Identity = 132/146 (90.41%), Postives = 137/146 (93.84%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVT VPVYSSFSDGA TGL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTTVPVYSSFSDGAATGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERV PGNIIVRQRGTRFHPGDYVG+GKDHTLFALKEG V FEK+KLSGRKW
Sbjct: 61  NLGVKKFGGERVTPGNIIVRQRGTRFHPGDYVGMGKDHTLFALKEGCVNFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKT 147
           VHVIPKEGHVLHP+Y TTSTS +LKT
Sbjct: 121 VHVIPKEGHVLHPIYATTSTSPELKT 146

[Close]

BLAST of CSPI02G04040 vs. NCBI nr
Match: XP_022964702.1 (uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964704.1 uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_023520403.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >XP_023520404.1 uncharacterized protein LOC111783717 [Cucurbita pepo subsp. pepo] >KAG7019178.1 rpmA [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 132/147 (89.80%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNPK 60
           MLNIATTFCKRLNVKDLVTNVPVYSSF DG+  GL+LLFRRWATKKTAGSTKNGRDS PK
Sbjct: 1   MLNIATTFCKRLNVKDLVTNVPVYSSFIDGSAGGLSLLFRRWATKKTAGSTKNGRDSKPK 60

Query: 61  YLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRKW 120
            LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG VKFEK+KLSGRKW
Sbjct: 61  NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGCVKFEKHKLSGRKW 120

Query: 121 VHVIPKEGHVLHPVYETTSTSLQLKTA 148
           VH+IPKEGHVLHPVY TT  S +LKTA
Sbjct: 121 VHIIPKEGHVLHPVYATTDISPELKTA 147

[Close]

BLAST of CSPI02G04040 vs. TAIR 10
Match: AT5G15220.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 229.6 bits (584), Expect = 1.7e-60
Identity = 107/151 (70.86%), Postives = 131/151 (86.75%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+F+RWATKKTAGSTKNGRDSNP
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 62  KYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRK 121
           K+LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK+K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPVY--ETTSTSLQLKTAA 149
           W+HV P  GHVLHP+Y     + S +LKTA+
Sbjct: 124 WIHVDPTGGHVLHPIYTKAAAAQSTKLKTAS 154

[Close]

BLAST of CSPI02G04040 vs. TAIR 10
Match: AT2G16930.2 (Ribosomal protein L27 family protein )

HSP 1 Score: 224.6 bits (571), Expect = 5.4e-59
Identity = 105/151 (69.54%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDSNP
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRK 121
           K+LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK+K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPVY--ETTSTSLQLKTAA 149
           W+HV P  GHVLHP+Y     + S +L TA+
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of CSPI02G04040 vs. TAIR 10
Match: AT2G16930.1 (Ribosomal protein L27 family protein )

HSP 1 Score: 224.6 bits (571), Expect = 5.4e-59
Identity = 105/151 (69.54%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDSNP
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRK 121
           K+LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK+K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPVY--ETTSTSLQLKTAA 149
           W+HV P  GHVLHP+Y     + S +L TA+
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of CSPI02G04040 vs. TAIR 10
Match: AT2G16930.3 (Ribosomal protein L27 family protein )

HSP 1 Score: 224.6 bits (571), Expect = 5.4e-59
Identity = 105/151 (69.54%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 2   LNIATTFCKRLNVKDLVTNVPVY--SSFSDGATTGLNLLFRRWATKKTAGSTKNGRDSNP 61
           LN A + C+R+++++L+T VP Y  SS SDG+++GL+L+ +RWATKKTAGSTKNGRDSNP
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 62  KYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGNVKFEKNKLSGRK 121
           K+LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG V+FEK+K++GRK
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEGRVRFEKSKITGRK 123

Query: 122 WVHVIPKEGHVLHPVY--ETTSTSLQLKTAA 149
           W+HV P  GHVLHP+Y     + S +L TA+
Sbjct: 124 WIHVDPIGGHVLHPIYTKAAAAKSTKLNTAS 154

[Close]

BLAST of CSPI02G04040 vs. TAIR 10
Match: AT5G40950.1 (ribosomal protein large subunit 27 )

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-20
Identity = 52/85 (61.18%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 43  ATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFA 102
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 103 LKEGNVKFEKNKLSGRKWVHVIPKE 128
           L +G VKFEK     RK + V P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

The following BLAST results are available for this feature:

BLAST of CSPI02G04040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A9IM57	1.0e-25	71.08	50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506)...	[more]
Q6G507	3.8e-25	69.88	50S ribosomal protein L27 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 ...	[more]
B4RZH4	6.5e-25	67.07	50S ribosomal protein L27 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 11...	[more]
Q8UBR6	8.5e-25	67.86	50S ribosomal protein L27 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=1...	[more]
A6UDV3	8.5e-25	67.86	50S ribosomal protein L27 OS=Sinorhizobium medicae (strain WSM419) OX=366394 GN=...	[more]

BLAST of CSPI02G04040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIQ3	2.1e-79	99.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G023860 PE=3 SV=1	[more]
A0A5A7TXR2	9.3e-75	94.59	50S ribosomal protein L27-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S4E0A6	9.3e-75	94.59	50S ribosomal protein L27-like OS=Cucumis melo OX=3656 GN=LOC107991330 PE=3 SV=1	[more]
A0A6J1I390	3.7e-71	90.54	uncharacterized protein LOC111469515 OS=Cucurbita maxima OX=3661 GN=LOC111469515...	[more]
A0A6J1HP14	6.9e-70	89.80	uncharacterized protein LOC111464705 OS=Cucurbita moschata OX=3662 GN=LOC1114647...	[more]

BLAST of CSPI02G04040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139171.1	4.4e-79	99.32	uncharacterized protein LOC101207653 [Cucumis sativus] >KGN60919.1 hypothetical ...	[more]
XP_016901663.1	1.9e-74	94.59	PREDICTED: 50S ribosomal protein L27-like [Cucumis melo] >KAA0047990.1 50S ribos...	[more]
XP_022970580.1	7.6e-71	90.54	uncharacterized protein LOC111469515 [Cucurbita maxima] >XP_022970581.1 uncharac...	[more]
XP_038877023.1	6.4e-70	90.41	50S ribosomal protein L27-like [Benincasa hispida]	[more]
XP_022964702.1	1.4e-69	89.80	uncharacterized protein LOC111464705 [Cucurbita moschata] >XP_022964703.1 unchar...	[more]

BLAST of CSPI02G04040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15220.1	1.7e-60	70.86	Ribosomal protein L27 family protein	[more]
AT2G16930.2	5.4e-59	69.54	Ribosomal protein L27 family protein	[more]
AT2G16930.1	5.4e-59	69.54	Ribosomal protein L27 family protein	[more]
AT2G16930.3	5.4e-59	69.54	Ribosomal protein L27 family protein	[more]
AT5G40950.1	3.8e-20	61.18	ribosomal protein large subunit 27	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001684	Ribosomal protein L27	PRINTS	PR00063	RIBOSOMALL27	coord: 95..119 score: 46.77 coord: 45..69 score: 65.23 coord: 70..94 score: 57.38
IPR001684	Ribosomal protein L27	PFAM	PF01016	Ribosomal_L27	coord: 43..123 e-value: 9.2E-38 score: 128.2
IPR001684	Ribosomal protein L27	TIGRFAM	TIGR00062	TIGR00062	coord: 43..123 e-value: 6.1E-35 score: 117.1
IPR001684	Ribosomal protein L27	PANTHER	PTHR15893	RIBOSOMAL PROTEIN L27	coord: 3..146
IPR001684	Ribosomal protein L27	HAMAP	MF_00539	Ribosomal_L27	coord: 42..126 score: 26.385191
None	No IPR available	GENE3D	2.40.50.100		coord: 47..142 e-value: 5.6E-33 score: 115.3
None	No IPR available	PANTHER	PTHR15893:SF10	50S RIBOSOMAL PROTEIN L27	coord: 3..146
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 43..123
IPR018261	Ribosomal protein L27, conserved site	PROSITE	PS00831	RIBOSOMAL_L27	coord: 75..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G04040.1	CSPI02G04040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0003735	structural constituent of ribosome