CSPI02G03530 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G03530
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	TMV resistance protein N-like
Location	Chr2: 2505455 .. 2505883 (-)
RNA-Seq Expression	CSPI02G03530
Synteny	CSPI02G03530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACGTATTCATCGGTTGTAGACTCGAAAGTTGTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTTTTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGCTGTGAAATGCCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

mRNA sequence

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACGTATTCATCGGTTGTAGACTCGAAAGTTGTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTTTTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGCTGTGAAATGCCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

Coding sequence (CDS)

ATGAATAGTGGGATTCCGGAATGGTTGAGCTATGAGACTGCATCAAATTCAATAAGGGCCAGTTTTCAACACAATCGCAATAGAAAGATAACTTTGGCTACATCCGTTACTTTCCGAGTGGATATTGGAGATTCATATCAAGGAATGGCCTTAGTTTCATGTAACGTATTCATCGGTTGTAGACTCGAAAGTTGTCATATGAGAAAATTTCCAACATCAACATTAGAATATACATGGTTAGTAGAAGCTTTTTCTACAAGACAAAGTGAGTCCTTGGAAGAGAATGATTGGAATGATGTTATAGTCTGGTTTGAGGCTGTGAAATGCCTACTATTGCCTACTATAATTTTCACTTTATTTATAAACTTTATTGCCTACTATAATTTTCCAAAATTTATTTATATTAAAGTACAAACCTTTAATATATAG

Protein sequence

MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGCRLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKCLLLPTIIFTLFINFIAYYNFPKFIYIKVQTFNI*

Homology

[Close]

BLAST of CSPI02G03530 vs. ExPASy TrEMBL
Match: A0A0A0LGA3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020860 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.9e-72
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
           MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC
Sbjct: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60

Query: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKCLLLPTIIFTLF 120
           RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIV FEAVK LLLPTIIFTLF
Sbjct: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF 120

Query: 121 INFIAYYNFPKFIYIKVQTFNI 143
           INFIAYYNFPKFIYIKVQTFNI
Sbjct: 121 INFIAYYNFPKFIYIKVQTFNI 142

[Close]

BLAST of CSPI02G03530 vs. ExPASy TrEMBL
Match: A0A5A7TWR2 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00010 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.1e-38
Identity = 82/115 (71.30%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW SY+ ASN+I  +FQHNR+ KITLATSVTFRVD GDS QGMALVSCN+ IGC
Sbjct: 1051 MNNGIPEWFSYQIASNAIMVTFQHNRDTKITLATSVTFRVD-GDSDQGMALVSCNILIGC 1110

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKCLLLPTI 116
            RL+  +MRKFP S  EYTWLVE   T +  SLE NDWNDVIVWFEAVKC  + TI
Sbjct: 1111 RLDRRYMRKFPKSASEYTWLVETSETYRGSSLEMNDWNDVIVWFEAVKCPEVVTI 1164

[Close]

BLAST of CSPI02G03530 vs. ExPASy TrEMBL
Match: A0A0A0LLK3 (TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.2e-32
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW SY++ SNSIR SF+H+ N +  LAT  T +V +GDSYQGMALVSC +FIG 
Sbjct: 1075 MNTGIPEWFSYQSISNSIRVSFRHDLNMERILATYATLQV-VGDSYQGMALVSCKIFIGY 1134

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1135 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1182

[Close]

BLAST of CSPI02G03530 vs. ExPASy TrEMBL
Match: A0A5A7VCN0 (TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00680 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW  Y++ S S+R SF+H+ N + TLAT  TF+V +GDS++GMALVSC +FIG 
Sbjct: 1047 MNTGIPEWFKYQSISTSVRVSFRHDLNMERTLATYATFQV-VGDSHRGMALVSCKIFIGY 1106

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1107 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1154

[Close]

BLAST of CSPI02G03530 vs. ExPASy TrEMBL
Match: A0A1S3C0A4 (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495402 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 3.6e-31
Identity = 68/109 (62.39%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW  Y++ S S+R SF+H+ N + TLAT  TF+V +GDS++GMALVSC +FIG 
Sbjct: 1073 MNTGIPEWFKYQSISTSVRVSFRHDLNMERTLATYATFQV-VGDSHRGMALVSCKIFIGY 1132

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1133 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1180

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: KGN60863.1 (hypothetical protein Csa_023476 [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 3.9e-72
Identity = 140/142 (98.59%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
           MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC
Sbjct: 1   MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60

Query: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKCLLLPTIIFTLF 120
           RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIV FEAVK LLLPTIIFTLF
Sbjct: 61  RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVLFEAVKWLLLPTIIFTLF 120

Query: 121 INFIAYYNFPKFIYIKVQTFNI 143
           INFIAYYNFPKFIYIKVQTFNI
Sbjct: 121 INFIAYYNFPKFIYIKVQTFNI 142

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: KAA0047942.1 (TMV resistance protein N-like [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 82/115 (71.30%), Postives = 92/115 (80.00%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW SY+ ASN+I  +FQHNR+ KITLATSVTFRVD GDS QGMALVSCN+ IGC
Sbjct: 1051 MNNGIPEWFSYQIASNAIMVTFQHNRDTKITLATSVTFRVD-GDSDQGMALVSCNILIGC 1110

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKCLLLPTI 116
            RL+  +MRKFP S  EYTWLVE   T +  SLE NDWNDVIVWFEAVKC  + TI
Sbjct: 1111 RLDRRYMRKFPKSASEYTWLVETSETYRGSSLEMNDWNDVIVWFEAVKCPEVVTI 1164

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: XP_038877735.1 (disease resistance protein RPS6-like, partial [Benincasa hispida])

HSP 1 Score: 158.7 bits (400), Expect = 3.8e-35
Identity = 77/109 (70.64%), Postives = 87/109 (79.82%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN  IP+W SY+T SNSIR SFQH+ N + TLAT VTF+V +GDSYQGMALVSCN+FIGC
Sbjct: 1004 MNIRIPKWFSYQTISNSIRVSFQHDLNIERTLATYVTFQV-VGDSYQGMALVSCNIFIGC 1063

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN VIVWFE VKC
Sbjct: 1064 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVIVWFEVVKC 1111

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: XP_031736894.1 (TMV resistance protein N [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 8.7e-32
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW SY++ SNSIR SF+H+ N +  LAT  T +V +GDSYQGMALVSC +FIG 
Sbjct: 1075 MNTGIPEWFSYQSISNSIRVSFRHDLNMERILATYATLQV-VGDSYQGMALVSCKIFIGY 1134

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1135 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1182

[Close]

BLAST of CSPI02G03530 vs. NCBI nr
Match: KAE8651581.1 (hypothetical protein Csa_023426 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 8.7e-32
Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1    MNSGIPEWLSYETASNSIRASFQHNRNRKITLATSVTFRVDIGDSYQGMALVSCNVFIGC 60
            MN+GIPEW SY++ SNSIR SF+H+ N +  LAT  T +V +GDSYQGMALVSC +FIG 
Sbjct: 1075 MNTGIPEWFSYQSISNSIRVSFRHDLNMERILATYATLQV-VGDSYQGMALVSCKIFIGY 1134

Query: 61   RLESCHMRKFPTSTLEYTWLVEAFSTRQSESLEENDWNDVIVWFEAVKC 110
            RL+SC MRKFP+ST EYTWLV   S   S SLE N+WN V VWFE VKC
Sbjct: 1135 RLQSCFMRKFPSSTSEYTWLVTTSSPTFSTSLEMNEWNHVTVWFEVVKC 1182

The following BLAST results are available for this feature:

BLAST of CSPI02G03530 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G03530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGA3	1.9e-72	98.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020860 PE=4 SV=1	[more]
A0A5A7TWR2	5.1e-38	71.30	TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0LLK3	4.2e-32	65.14	TIR domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G020890 PE=4 SV...	[more]
A0A5A7VCN0	3.6e-31	62.39	TMV resistance protein N-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3C0A4	3.6e-31	62.39	LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of CSPI02G03530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60863.1	3.9e-72	98.59	hypothetical protein Csa_023476 [Cucumis sativus]	[more]
KAA0047942.1	1.1e-37	71.30	TMV resistance protein N-like [Cucumis melo var. makuwa]	[more]
XP_038877735.1	3.8e-35	70.64	disease resistance protein RPS6-like, partial [Benincasa hispida]	[more]
XP_031736894.1	8.7e-32	65.14	TMV resistance protein N [Cucumis sativus]	[more]
KAE8651581.1	8.7e-32	65.14	hypothetical protein Csa_023426 [Cucumis sativus]	[more]

BLAST of CSPI02G03530 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G03530.1	CSPI02G03530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0007165	signal transduction
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003953	NAD+ nucleosidase activity