CSPI02G02720 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G02720
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
LocationChr2: 1896252 .. 1896608 (-)
RNA-Seq ExpressionCSPI02G02720
SyntenyCSPI02G02720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAGTTTTTTTTCTCTCACAAATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

mRNA sequence

ATAGTTTTTTTTCTCTCACAAATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

Coding sequence (CDS)

ATGGCTTTCTCTCTTATGAAAACGGTTGCTTTTCTTTTCATTTTTCTTTCTATTGTCGACATGTCGGCCGCAAGGGTCTTGAATGGAGAGCGGTGGCTTCCAGGGTCAATGGTTCCCTTCGCGATGCTACGAGGTCCCGTGCCTAGTTCAAGCAGGAACCCGTGTTCCTTTATTCCGGGGTTTAGTCGAGGCCGGTGTACGTTGAGCGAGGTGGACGAGGGTGATGCCAGTGTTCGTGGTGGCTCCTCCGCGTTCCCGGGGTTGAATGCTGATGGATTTGCAGCGGCTTCTGTGGTTAATCAAACGCAGAAGCAAGATTCTTCTATGAGCTCTTGA

Protein sequence

MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS*
Homology
BLAST of CSPI02G02720 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.7e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 112
           FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of CSPI02G02720 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.3e-40
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 112
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of CSPI02G02720 vs. ExPASy TrEMBL
Match: A0A0B2RDN7 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.4e-08
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 12 LFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEV 71
          + + LS+      R L GE+WL  ++V  ++ RGPV SS RNPCS +PG SRGRCTL E+
Sbjct: 14 MILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTLGEI 73

Query: 72 D 73
          +
Sbjct: 74 N 74

BLAST of CSPI02G02720 vs. ExPASy TrEMBL
Match: I1JRQ4 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.4e-08
Identity = 30/61 (49.18%), Postives = 41/61 (67.21%), Query Frame = 0

Query: 12 LFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEV 71
          + + LS+      R L GE+WL  ++V  ++ RGPV SS RNPCS +PG SRGRCTL E+
Sbjct: 14 MILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTLGEI 73

Query: 72 D 73
          +
Sbjct: 74 N 74

BLAST of CSPI02G02720 vs. ExPASy TrEMBL
Match: A0A6A4KR04 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_20131 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 9.7e-08
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 0

Query: 23  AARVLNGERWLPG--SMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRG 82
           A R L GE WL    ++   ++ RGPV  S  NPC++IPG  RGRCTL+E +E + S R 
Sbjct: 24  ATRPLEGEEWLNNLKTLAIQSLQRGPVTPSGSNPCTYIPGGKRGRCTLAE-NESNYSGRV 83

Query: 83  GSS---AFPGLNADGFAAASVVNQTQKQDSS 109
           G +   AFPG+    FA AS  N ++KQD S
Sbjct: 84  GHAAPPAFPGVMVK-FAPASTANDSRKQDGS 112

BLAST of CSPI02G02720 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 3.5e-52
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 112
           FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 111

BLAST of CSPI02G02720 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 8.9e-40
Identity = 92/111 (82.88%), Postives = 98/111 (88.29%), Query Frame = 0

Query: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60
           MAFSL+KTVAFLFIFLSI D+S        RWLPGS VP A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVG------RWLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSMSS 112
           FSRGRCTLSEVD+G ASV GGSSAFPGLNADGFAAAS+VNQTQKQDSS+SS
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQDSSLSS 105

BLAST of CSPI02G02720 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-30
Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 0

Query: 21  MSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRG 80
           MSAARV+ GERWLP   VP AMLRG VPSSSRNPCSFIPGFSRGRCTLSE D+G A+V G
Sbjct: 1   MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 60

Query: 81  GSSAFPGLNADGFAAASVVNQTQKQDSSM 110
           GSSA  GLNADGFAAAS+ N+TQK+D S+
Sbjct: 61  GSSALSGLNADGFAAASMANKTQKKDPSL 89

BLAST of CSPI02G02720 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-25
Identity = 72/113 (63.72%), Postives = 82/113 (72.57%), Query Frame = 0

Query: 1   MAFSLMKT--VAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFI 60
           M FS+MKT   AF+FI L I  +SAARVL GERW P   V   MLRG VP S RNPCSFI
Sbjct: 1   MPFSVMKTPAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGLVPPSGRNPCSFI 60

Query: 61  PGFSRGRCTLSEVDE--GDASVRGGSSAFPGLNADGFAAASVVNQTQKQDSSM 110
           PG  RGRCTLSEV++  G     GGSSAFPG+N DGF+AA++VN TQKQD S+
Sbjct: 61  PGLGRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQDPSL 110

BLAST of CSPI02G02720 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 80.9 bits (198), Expect = 7.8e-12
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = 0

Query: 22  SAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPGFSRGRCTLSEVDEGDASVRGG 81
           +A R+L+ E+WL  +++  ++ RGPVP S  NPC+FIPG +RGRCTLSE+D      R  
Sbjct: 32  AAVRLLDEEQWLAKNLIVQSLQRGPVPPSGGNPCTFIPGRNRGRCTLSEMDVAGQFPRAP 91

Query: 82  SSAFPGLNADGFAAA---SVVNQTQKQDSS 109
           ++AFP +  D  A     S  N+TQKQDSS
Sbjct: 92  AAAFPDIVVDFGAVTAGNSGANETQKQDSS 121

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ841.7e-52100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5A7VCY24.3e-4082.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0B2RDN77.4e-0849.18Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1[more]
I1JRQ47.4e-0849.18Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1[more]
A0A6A4KR049.7e-0846.15Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3... [more]
Match NameE-valueIdentityDescription
KGN60782.13.5e-52100.00hypothetical protein Csa_019261 [Cucumis sativus][more]
KAA0063581.18.9e-4082.88hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KAG6599331.13.7e-3077.53hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586324.14.7e-2563.72hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021888699.17.8e-1247.78uncharacterized protein LOC110807772 [Carica papaya][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 4..107
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 4..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G02720.1CSPI02G02720.1mRNA