CSPI02G02690 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G02690
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	VQ domain-containing protein
Location	Chr2: 1867255 .. 1867748 (-)
RNA-Seq Expression	CSPI02G02690
Synteny	CSPI02G02690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATATTATATATAGAACCCAATTCTTTGTTCAAAAGCAAGAGAGAGATATCTCTCTCTTTCTAACTCTCTCTAATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCACAACCACAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTTGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTGTGCCCGAACTCCATCTGCAATGTTTCATGCAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGGTCAAGGTTGTTTTGAAACACAGAATAATAACAATATTCTTCCCAACAACATTATGGAGTTTCAATCTTCTTGTTTTTTTCAATAG

mRNA sequence

CAATATTATATATAGAACCCAATTCTTTGTTCAAAAGCAAGAGAGAGATATCTCTCTCTTTCTAACTCTCTCTAATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCACAACCACAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTTGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTGTGCCCGAACTCCATCTGCAATGTTTCATGCAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGGTCAAGGTTGTTTTGAAACACAGAATAATAACAATATTCTTCCCAACAACATTATGGAGTTTCAATCTTCTTGTTTTTTTCAATAG

Coding sequence (CDS)

ATGGGGAAGTGTGGAGAGAATCAATACACCAACCACAACCACAACCACAGCCAAAGCCAAAACCAAAACCCTACAAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCACTTGAGTTCAGAGCCATTGTTCAGCAACTCACCGGCTTTGACTCCAATACTCCTACTCGCCGGAGGAACCAGAAATTGCTCTCCGACTGTGCCCGAACTCCATCTGCAATGTTTCATGCAGATCGTCATGAAATGGAAGTTTTGAAGTTCTCAGATGATCATCACATGGAGTCGCTCCTCCAATTTGATGGTCAAGGTTGTTTTGAAACACAGAATAATAACAATATTCTTCCCAACAACATTATGGAGTTTCAATCTTCTTGTTTTTTTCAATAG

Protein sequence

MGKCGENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQNNNNILPNNIMEFQSSCFFQ*

Homology

[Close]

BLAST of CSPI02G02690 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 4.1e-72
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGKCGENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGENQYTNHNH+ SQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120
           FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 NNNILPNNIMEFQSSCFFQ 140
           NNNILPNNIMEFQSSCFFQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of CSPI02G02690 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.9e-25
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 41  MMIKASNALEFRAIVQQLTGFDSN-TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFS 100
           MMIKAS+ALEFRAIVQQLTGFDSN TPTRRRNQK +SDCARTPS+MFHADR EMEVLKFS
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADR-EMEVLKFS 60

Query: 101 DDHHMESLLQFDGQGC 116
           DD HM SLLQFD QGC
Sbjct: 61  DD-HMASLLQFDDQGC 74

[Close]

BLAST of CSPI02G02690 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-09
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 15  NHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRRNQKL 74
           +H   +++NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +S+          
Sbjct: 25  DHRCHKSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVGEPSNVPTT 84

Query: 75  LSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGC-FETQNNNNILPNNIMEFQ 134
           L + A    + FH D    +V    DD  +    Q D     F+       +P N+  FQ
Sbjct: 85  LPEEANQVHSPFHVDSPPAKV----DDKSLLDTFQDDMSSLEFDEGFLWRAVPENLFGFQ 144

Query: 135 SSCFF 139
           S   F
Sbjct: 145 SPFIF 145

[Close]

BLAST of CSPI02G02690 vs. ExPASy TrEMBL
Match: W9RT96 (VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-09
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 5   GENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSN 64
           G +QY N+ H  SQ Q   P+K ++KPIK+KYISSPMM++A+NA EFRAIVQ+LTG +SN
Sbjct: 8   GNSQYQNNPHLRSQKQ---PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSN 67

Query: 65  TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHH 104
                 +        RT +    +D  +    +FS D+H
Sbjct: 68  YTDLYDDVHHDESLNRTTTIFSESDHDQPGWSQFSADYH 103

[Close]

BLAST of CSPI02G02690 vs. ExPASy TrEMBL
Match: A0A1R3HNT0 (VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18001 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.2e-07
Identity = 39/101 (38.61%), Postives = 61/101 (60.40%), Query Frame = 0


Query: 12  HNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRRN 71
           H+H++   +++NPTKV++ PIKV YI SP M+K SNA EFRAIVQ+LTG +S+T  +  N
Sbjct: 8   HHHHYDDLKSKNPTKVKKNPIKVTYIDSPTMVKVSNADEFRAIVQELTGRNSDTREQHSN 67

Query: 72  QKLLSDCARTPSAMFHADRHEMEVLKFSDDHHME-SLLQFD 112
               +   +  +   H    +++     D   ++ S L+FD
Sbjct: 68  DVHTTTIPKEEANQVHDSSAKVDDRILLDSFPVDMSSLEFD 108

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 8.4e-72
Identity = 137/139 (98.56%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MGKCGENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGENQYTNHNH+ SQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120
           FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN
Sbjct: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120

Query: 121 NNNILPNNIMEFQSSCFFQ 140
           NNNILPNNIMEFQSSCFFQ
Sbjct: 121 NNNILPNNIMEFQSSCFFQ 139

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-32
Identity = 85/139 (61.15%), Postives = 99/139 (71.22%), Query Frame = 0


Query: 1   MGKCGENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60
           MGKCGEN++ +      Q Q+QNPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENEWKD------QKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTG 60

Query: 61  FDSNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQN 120
           F S++PTRR N K     A+TPS        +ME LK SD  +M SLL+FD + CF T  
Sbjct: 61  FTSHSPTRRSNHKPPPHAAQTPSTSTLHANPQMEALKLSD--NMSSLLEFDDEACFVTL- 120

Query: 121 NNNILPNNIMEFQSSCFFQ 140
            +N+L NN M FQ+SC FQ
Sbjct: 121 -DNVLTNNFMGFQASCLFQ 129

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-24
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 41  MMIKASNALEFRAIVQQLTGFDSN-TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFS 100
           MMIKAS+ALEFRAIVQQLTGFDSN TPTRRRNQK +SDCARTPS+MFHADR EMEVLKFS
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCARTPSSMFHADR-EMEVLKFS 60

Query: 101 DDHHMESLLQFDGQGC 116
           DD HM SLLQFD QGC
Sbjct: 61  DD-HMASLLQFDDQGC 74

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-09
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 15  NHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSNTPTRRRNQKL 74
           +H   +++NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +S+          
Sbjct: 25  DHRCHKSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVGEPSNVPTT 84

Query: 75  LSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGC-FETQNNNNILPNNIMEFQ 134
           L + A    + FH D    +V    DD  +    Q D     F+       +P N+  FQ
Sbjct: 85  LPEEANQVHSPFHVDSPPAKV----DDKSLLDTFQDDMSSLEFDEGFLWRAVPENLFGFQ 144

Query: 135 SSCFF 139
           S   F
Sbjct: 145 SPFIF 145

[Close]

BLAST of CSPI02G02690 vs. NCBI nr
Match: XP_010102262.1 (sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypothetical protein L484_024544 [Morus notabilis])

HSP 1 Score: 71.2 bits (173), Expect = 7.8e-09
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 0


Query: 5   GENQYTNHNHNHSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFDSN 64
           G +QY N+ H  SQ Q   P+K ++KPIK+KYISSPMM++A+NA EFRAIVQ+LTG +SN
Sbjct: 8   GNSQYQNNPHLRSQKQ---PSKGKKKPIKIKYISSPMMVRANNASEFRAIVQELTGRNSN 67

Query: 65  TPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHH 104
                 +        RT +    +D  +    +FS D+H
Sbjct: 68  YTDLYDDVHHDESLNRTTTIFSESDHDQPGWSQFSADYH 103

The following BLAST results are available for this feature:

BLAST of CSPI02G02690 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G02690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	4.1e-72	98.56	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A5A7V7M1	4.9e-25	88.16	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1A533	1.7e-09	39.20	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
W9RT96	3.8e-09	44.44	VQ domain-containing protein OS=Morus notabilis OX=981085 GN=L484_024544 PE=4 SV...	[more]
A0A1R3HNT0	1.2e-07	38.61	VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18001 P...	[more]

BLAST of CSPI02G02690 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60779.1	8.4e-72	98.56	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
KAG6599333.1	1.7e-32	61.15	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0063578.1	1.0e-24	88.16	hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]	[more]
XP_021282108.1	3.5e-09	39.20	uncharacterized protein LOC110414990 [Herrania umbratica]	[more]
XP_010102262.1	7.8e-09	44.44	sigma factor binding protein 1, chloroplastic [Morus notabilis] >EXB93205.1 hypo...	[more]

BLAST of CSPI02G02690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 37..64 e-value: 6.4E-9 score: 35.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 11..136
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 11..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G02690.1	CSPI02G02690.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity