CSPI02G01720 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G01720
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal protein L31
LocationChr2: 1203628 .. 1205732 (+)
RNA-Seq ExpressionCSPI02G01720
SyntenyCSPI02G01720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACTCTCTTCACCGTCTTCCTTACCCTCCGCCCTGCCGTGAACTTCTCACAAACTCCACTATCAGAGCTGCTGCTTCTTCTTCTTCCTCTTCACACAAAGGTACTCTCTTTCTCTCTCTTTCTCTATCTTTCTCTCTTCTTCTTCTTCTTCCTCTTCTATTTTCAATCTTATTTCTTCCCTTTATATAATGAATGGTTCAACCTAATTTGTAAGTACTAATTCGTTGATGTTTTCAGAAACGGACGTGTTTCAGCAATCAGAGCCTTGGAGAGGAAAATTTTGACACCAGGGGTTATTAATATCTGTAAGTTTAGTCTCCATTTTTTAAGGAGTTAATTTAATTTCTTCCAATTCCCAGTTTTAGGGTTGTTTTTGTATATGATTTTCTTGGAGTTACTTATTTGTATTCTTTATCATTAAATCCACGCGAGAGTTTCCTGTTTCATCAAGATTAATTGTTTACTTGCTGTGAAAATATGTGGGTACGCGGCCGATTTAGGATTTGGGATTAATTATAGTGAGAAGTATCTTACAGTCTTCTCACAGCTTAATTGTGGTGGTCATTTTCAAATTTCATACTCTTTTTGGGTTACGAATATTGAACATTTTGCAATGCTCACCAGCCGTTTGATGAAATTCTTCTATGGAGTGGTATGTTTGTATTTGTTCATCCTTCTTCATTCCTTCTTTGTGTGCCTGTCACTTTCTTAGTTTCTGCTCTTTTGGAATGACGGACATTGAACATTGCATAGTGCCCACCAAATGTTTGATTATATTCTAAAATAAAATGGTATATTTGTGCATGATCATGCTTCTCCATATCCCCTTAATGTGGCTGTCACTTCCTAGTTCCTAATTTCTACCCCTTTAGGGTGCTGAACATTGAACACTACGTAGAGGCTAGAGCCCACCAAATGTTTGACGAAATTCTTGTTGTAGGTAGTATAGTTGTGTTGTGCATATTCGTCATTCTTCGCTTTCCCATGTATAAACAGAAAAAGTTGTCCATTGAGAATTGGACTTTTGGTATTAGATTCAAATGTAGCTTAGCTTTACTATGATTGTTCCTTTTCTGTTTCTTTATCAATTTTGGTTAAATTTCTAAGTTGAGCCTTTGAACTTTCAATTTTATGTCTACTTAGTCCTGAATTTAAAAAGTTTTGAATAGGTCAAGGACCTATTAGATACGAAATCAAAACTTTAGTTACTTATTTGACACAATGGAAATTGGAAAGATTAAGGACGTACAAAACACTTTTTAAACTACAAGGACCTATTAGATACAAATGGGTAGTTCACGGGCCAAATAGATGCAAACTTAAAAGTTTAGGGACTAAATCTGAAGTTTAACCATCAATTTTTTTTGTAGAAGCTTTGATTGTAAGTACTAGTTATGATTACAGATCTATACAATGAAGAAAGGCTTGCACCCTCAATTGCAGTATGTATCATATGTCACTCCGAGTGGCAGATTGATGAGTGCTATGATGACCAAAGCACACAATGTCAGTAAAGTCTACCACCTCAGAGCAAAGCGCCAAATGATTGAAAGTATTGGGCAGCTTGCCAAGTTCAGACGTCGTTATGAGATGGGGAATGATGAAAATGCTGACAATGCTGAAAATGTTGAAAATGCTGAAAAGAAGTGACTTTCAGTGCAGCTAAAGGATCAGCTGTTTGCTTGGATGGTTCATTCTGAATTCGTTTTGAGGGCATGGCCTTGTGAGTGTTAAGCATTTAATGTTCGCTTCTTTCAATTAATCAACCCCTTTTCAGAGTCTAGTCTTTTACAGGACAGCGAGTTATTTCTTATTATGGTTTTGATGTGCTTTTACCATTAGAATGATCTAATCTGCATTCCTATTTTCTTTTGATCATTTTCCACCCTCTTCTCTTACTGGGAAGCCTAGATTTATGAAACATCGAGGTGTTTGGCACACCGATTTTCATAACTATAAGTTGTGTTAAATAACTCAACTTCGATAGCATTTATTATTGAAGTTCACACATTTATATATGAACACCATCTTCTCCTCTCTCTCTTTTGCAAATTTTTCGAAGAACACCAACTAACAACTATGTACTTCAAAACTTAACTCAGCA

mRNA sequence

CAACTCTCTTCACCGTCTTCCTTACCCTCCGCCCTGCCGTGAACTTCTCACAAACTCCACTATCAGAGCTGCTGCTTCTTCTTCTTCCTCTTCACACAAAGAAACGGACGTGTTTCAGCAATCAGAGCCTTGGAGAGGAAAATTTTGACACCAGGGGTTATTAATATCTATCTATACAATGAAGAAAGGCTTGCACCCTCAATTGCAGTATGTATCATATGTCACTCCGAGTGGCAGATTGATGAGTGCTATGATGACCAAAGCACACAATGTCAGTAAAGTCTACCACCTCAGAGCAAAGCGCCAAATGATTGAAAGTATTGGGCAGCTTGCCAAGTTCAGACGTCGTTATGAGATGGGGAATGATGAAAATGCTGACAATGCTGAAAATGTTGAAAATGCTGAAAAGAAGTGACTTTCAGTGCAGCTAAAGGATCAGCTGTTTGCTTGGATGGTTCATTCTGAATTCGTTTTGAGGGCATGGCCTTGTGAGTGTTAAGCATTTAATGTTCGCTTCTTTCAATTAATCAACCCCTTTTCAGAGTCTAGTCTTTTACAGGACAGCGAGTTATTTCTTATTATGGTTTTGATGTGCTTTTACCATTAGAATGATCTAATCTGCATTCCTATTTTCTTTTGATCATTTTCCACCCTCTTCTCTTACTGGGAAGCCTAGATTTATGAAACATCGAGGTGTTTGGCACACCGATTTTCATAACTATAAGTTGTGTTAAATAACTCAACTTCGATAGCATTTATTATTGAAGTTCACACATTTATATATGAACACCATCTTCTCCTCTCTCTCTTTTGCAAATTTTTCGAAGAACACCAACTAACAACTATGTACTTCAAAACTTAACTCAGCA

Coding sequence (CDS)

ATGAAGAAAGGCTTGCACCCTCAATTGCAGTATGTATCATATGTCACTCCGAGTGGCAGATTGATGAGTGCTATGATGACCAAAGCACACAATGTCAGTAAAGTCTACCACCTCAGAGCAAAGCGCCAAATGATTGAAAGTATTGGGCAGCTTGCCAAGTTCAGACGTCGTTATGAGATGGGGAATGATGAAAATGCTGACAATGCTGAAAATGTTGAAAATGCTGAAAAGAAGTGA

Protein sequence

MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEMGNDENADNAENVENAEKK*
Homology
[Close]
BLAST of CSPI02G01720 vs. ExPASy TrEMBL
Match: A0A0A0LI20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006250 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.5e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM
Sbjct: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60

Query: 61 GNDENADNAENVENAEKK 79
          GNDENADNAENVENAEKK
Sbjct: 61 GNDENADNAENVENAEKK 78

[Close]
BLAST of CSPI02G01720 vs. ExPASy TrEMBL
Match: A0A1S4E202 (uncharacterized protein LOC103497231 OS=Cucumis melo OX=3656 GN=LOC103497231 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.5e-31
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQLQYVSYVTPSGRLM AMMTK HNVSKVYHLRAKRQMIES+GQLAKF+RRYE+
Sbjct: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60

Query: 61 GNDENADNAENVENAEKK 79
          GNDE+A NAENVENAEKK
Sbjct: 61 GNDEDAANAENVENAEKK 78

[Close]
BLAST of CSPI02G01720 vs. ExPASy TrEMBL
Match: A0A6J1CPB3 (uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013069 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.7e-20
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQ+Q++SYVT SGRLM  MMTK H+V KVYH RAKRQM ES+GQ+AKF+RRYE 
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GNDENADNAENVENAEK 78
          G       AENVENAEK
Sbjct: 61 G------IAENVENAEK 71

[Close]
BLAST of CSPI02G01720 vs. ExPASy TrEMBL
Match: F6GUK5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00680 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQ+Q++SYVT SGRLM  MMT+ H+V KVYHLRA+RQM +S+GQ+AKF+RRYE 
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHSVGKVYHLRARRQMAQSVGQIAKFKRRYEQ 60

Query: 61 GNDENAD 68
           N+EN +
Sbjct: 61 KNEENEE 67

[Close]
BLAST of CSPI02G01720 vs. ExPASy TrEMBL
Match: A0A438EM09 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_076149 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.5e-18
Identity = 46/67 (68.66%), Postives = 58/67 (86.57%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQ+Q++SYVT SGRLM  MMT+ H+V KVYHLRA+RQM +S+GQ+AKF+RRYE 
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHSVGKVYHLRARRQMAQSVGQIAKFKRRYEQ 60

Query: 61 GNDENAD 68
           N+EN +
Sbjct: 61 KNEENEE 67

[Close]
BLAST of CSPI02G01720 vs. NCBI nr
Match: XP_011648680.1 (uncharacterized protein LOC101220819 [Cucumis sativus] >XP_011648681.1 uncharacterized protein LOC101220819 [Cucumis sativus] >KGN60679.1 hypothetical protein Csa_019520 [Cucumis sativus])

HSP 1 Score: 154.1 bits (388), Expect = 5.1e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM
Sbjct: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60

Query: 61 GNDENADNAENVENAEKK 79
          GNDENADNAENVENAEKK
Sbjct: 61 GNDENADNAENVENAEKK 78

[Close]
BLAST of CSPI02G01720 vs. NCBI nr
Match: XP_008457569.1 (PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo] >XP_016902259.1 PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo] >XP_016902260.1 PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo] >XP_016902262.1 PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQLQYVSYVTPSGRLM AMMTK HNVSKVYHLRAKRQMIES+GQLAKF+RRYE+
Sbjct: 1  MKKGLHPQLQYVSYVTPSGRLMGAMMTKIHNVSKVYHLRAKRQMIESVGQLAKFKRRYEI 60

Query: 61 GNDENADNAENVENAEKK 79
          GNDE+A NAENVENAEKK
Sbjct: 61 GNDEDAANAENVENAEKK 78

[Close]
BLAST of CSPI02G01720 vs. NCBI nr
Match: XP_022143125.1 (uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncharacterized protein LOC111013069 [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 5.5e-20
Identity = 55/77 (71.43%), Postives = 62/77 (80.52%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQ+Q++SYVT SGRLM  MMTK H+V KVYH RAKRQM ES+GQ+AKF+RRYE 
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTKIHHVGKVYHFRAKRQMAESVGQIAKFKRRYEK 60

Query: 61 GNDENADNAENVENAEK 78
          G       AENVENAEK
Sbjct: 61 G------IAENVENAEK 71

[Close]
BLAST of CSPI02G01720 vs. NCBI nr
Match: XP_031286568.1 (uncharacterized protein LOC116145269 [Pistacia vera] >XP_031286569.1 uncharacterized protein LOC116145269 [Pistacia vera])

HSP 1 Score: 103.2 bits (256), Expect = 1.0e-18
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQLQ+VSYVTP GRLM A MTK H+V KVYHLRAKRQM ESIGQ+AKF+RRY  
Sbjct: 1  MKKGLHPQLQWVSYVTPCGRLMHATMTKIHHVGKVYHLRAKRQMAESIGQVAKFKRRY-- 60

Query: 61 GNDENADNAE 71
          G  EN +N E
Sbjct: 61 GQQENTENNE 68

[Close]
BLAST of CSPI02G01720 vs. NCBI nr
Match: KAF3453405.1 (hypothetical protein FNV43_RR03845 [Rhamnella rubrinervis])

HSP 1 Score: 102.8 bits (255), Expect = 1.4e-18
Identity = 48/64 (75.00%), Postives = 56/64 (87.50%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          M+KGLHPQ+Q++SYVT SGRLM  MMTK HNV KVYHL+AKRQM ESIG +AKFR+RYE+
Sbjct: 16 MRKGLHPQMQWISYVTQSGRLMHVMMTKIHNVGKVYHLKAKRQMAESIGPIAKFRKRYEV 75

Query: 61 GNDE 65
          GN E
Sbjct: 76 GNTE 79

[Close]
BLAST of CSPI02G01720 vs. TAIR 10
Match: AT5G55125.1 (Ribosomal protein L31 )

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-19
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQ+Q++SYVT SGRLM  MMT+ H+V KVYH  AKRQM +SIGQ+AKF+RR+  
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 61 GNDENADNAE--NVENAEK 78
           N++ A+ AE  N EN  K
Sbjct: 61 -NEQEAEAAEENNNENQNK 76

[Close]
BLAST of CSPI02G01720 vs. TAIR 10
Match: AT5G55125.2 (Ribosomal protein L31 )

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-19
Identity = 49/79 (62.03%), Postives = 61/79 (77.22%), Query Frame = 0 

Query: 1  MKKGLHPQLQYVSYVTPSGRLMSAMMTKAHNVSKVYHLRAKRQMIESIGQLAKFRRRYEM 60
          MKKGLHPQ+Q++SYVT SGRLM  MMT+ H+V KVYH  AKRQM +SIGQ+AKF+RR+  
Sbjct: 1  MKKGLHPQMQWISYVTQSGRLMHVMMTRIHHVGKVYHFGAKRQMAQSIGQIAKFKRRF-- 60

Query: 61 GNDENADNAE--NVENAEK 78
           N++ A+ AE  N EN  K
Sbjct: 61 -NEQEAEAAEENNNENQNK 76

The following BLAST results are available for this feature:
BLAST of CSPI02G01720 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G01720 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LI202.5e-34100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006250 PE=4 SV=1[more]
A0A1S4E2027.5e-3191.03uncharacterized protein LOC103497231 OS=Cucumis melo OX=3656 GN=LOC103497231 PE=... [more]
A0A6J1CPB32.7e-2071.43uncharacterized protein LOC111013069 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
F6GUK51.5e-1868.66Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_06s0004g00680 PE=4 SV=... [more]
A0A438EM091.5e-1868.66Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_076149 PE=4 SV=1[more]
BLAST of CSPI02G01720 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011648680.15.1e-34100.00uncharacterized protein LOC101220819 [Cucumis sativus] >XP_011648681.1 uncharact... [more]
XP_008457569.11.5e-3091.03PREDICTED: uncharacterized protein LOC103497231 [Cucumis melo] >XP_016902259.1 P... [more]
XP_022143125.15.5e-2071.43uncharacterized protein LOC111013069 [Momordica charantia] >XP_022143126.1 uncha... [more]
XP_031286568.11.0e-1875.71uncharacterized protein LOC116145269 [Pistacia vera] >XP_031286569.1 uncharacter... [more]
KAF3453405.11.4e-1875.00hypothetical protein FNV43_RR03845 [Rhamnella rubrinervis][more]
BLAST of CSPI02G01720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G55125.11.7e-1962.03Ribosomal protein L31 [more]
AT5G55125.21.7e-1962.03Ribosomal protein L31 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37264RIBOSOMAL PROTEIN L31coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G01720.2CSPI02G01720.2mRNA
CSPI02G01720.1CSPI02G01720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005840 ribosome