CSPI02G01430 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G01430
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RRM domain-containing protein
Location	Chr2: 1003794 .. 1007792 (-)
RNA-Seq Expression	CSPI02G01430
Synteny	CSPI02G01430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAGTAGTGTGCTTCTCGACTTTCTTCATTCTTCTCGGAGATTGGATTTTCACGGTGGCCATGACGGTGGACGACGACAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGGTCAATTACTCCACCGACCGGATTCGCTCCTTTCATCTTCTTATGTCACAAATTTTCTTTTACGACTGTTGATAATATCCTTACGTCGTGTATACCTCAGAATTATGTAGCTCTTTAGGTGTTTCTGATGGAATATTTGATTGCTTGAATATAAGCTTTTTTTTCCCAAGGCTATTTGAAGTTCAGAGATCAATTCGAGCTCAATTGTTTAGTTTTATGACGTTTCTTTAGGAGTATAGACGTGTTTTGCGTTACTGAAAATGGTGAAAAAAAAATTGGATTGTGTTGAAGAATTTTTGCTATTGTGGAGAATTTGAGTAGTTAGTTCACTTTTGTGTTTGTTAAAATGCTTCAATTAGGCTTGTTGAATGGCTTACTTACATGTGGTTTAATGTATTTATAGTTGAATGCTTTGATTTGGTGTTCAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACTTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGGTATGTTAATTTATAGCTGGAATATGAATCTTTTTAGTTTTGGATGGTTATATATTTTTCATTATGGTTTTTTAGTCTTGAGTCCTGACATTTTAAGGCTTTGAATTAGACTATTGAAGGGCGGGTTGTCCGAGTTAATGGAGTGAAGAGTCGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAGCTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCATGATCTACCAAGGGATCAATTTTTGGATAGGGAGCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCTGATTTGAGTGGAGGCAGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGAAGAGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACGGGTTAGTCTGTCCTCAAACTTATTGAAATCAATGTTAAGTAGTTTTAATATAAATTTATATTTATCTTTGGGCAGTCATCTGACTAATTTGCCCATCTGTGGCATTATGTTGAAAACTTGAGATTGCCCAAATTGTTGTGATTGGAATGTCTGATTATTTCTAGCCATTTCACGTTTGATAGTTTTGATCTGGGCAGTTAGTGATTCCAGAAATTATCTAGAGACCTTGAAAGCACTTTATTTTTTCATTTTTTATAGTTCATTGGGTTTATATTAAGGGCGGTGAACAATAGGGAAGGACATTACTACTAGCAAATTGCAGAATTAGATGGCCGTAGAGGCATGTTCCAAACAATGGATCTGCTGTTACAACGCTTAGAGAGATGAATTAGATAATAACTTTTCTGTTGGACCACTTAAAAAATGCTTCCACATCATTCTTAGCTCATTTTAGTGCTAGTCTTGTTTAGTTTTAGAACCATCTTTTGTTTTTCTTTTCCCCAAATGTACAGACCTTCGTATTTGTATAGTATAATCCTCTATTGTAAAGGAAGTGGTTCCCTATTAACAACTACAACTTAAAATTTTCCTTTACAAATTGGAGGAATCTTTTTTAAATCCCATTTGGATGGGTTTTCTTTTGTATTGTTTCATTCAAACAATGAAATTGTTTCCTGTCAAAATAGAAAAAAAAAATGAAATGATAAATAGAAAGTAAAGGAAGAGGAAGATGGCAAATGTTCTTCTCTCCTGTTTCATACAAAGGATAGAGGAGTCACTTTTTGGTTATGATTATATGATTGCTACTATGTCTTCTCTTTTCAGTGCCTCCTGTTTCATAAAAAAGATAGAGAAAATGGAATGACCTTTTGGCTATGATTATATGATTGCTATTATGGCTTCTGTTTTCAGTCTTACAATTGAAGGTCGAACTGCACGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAAGTATGCTACTGCTTACCATTTTTCACCTTTTAGATTTTCCTATTAAAAAGTTACAACTTACTAATAAGCATTGAATGCAACTTTTAATCCTATTGTTTGTGTTTTAGTTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGGTTTGTTTCCTTGATGATTCTCTTTTTCCATGCAGAAGAGAGAGACTCGTTTAGAAATGGTCAGGAAAGTTTTCCGAAAAATTTCAATGTGGATTAGCATAATTTAGTACTCTTGATCTGAAATTTACTTCAAAATATATGTGCATATAGGTCCCAAATAAATACATGTTGAGTTTTGTGGAAGTTCTGCAACTTGTTTTGTATCATTCTTTTAGATATCATGATTGCACTTGAATTTAAAGCCTTGGAGTTTTTCCTTTTCAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGGTAAAAAAATTATTTTATAACTTGCAACCATGATACTTTTGTTGTGTTCTGATTGTAGCCTTGTCCCTCAATTATAACTAATATGGACTTGGATCCAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACGCAGCTGATCAAGGTAAACTATCTGTTCAATATTTTACTTTATTCAATAACTGCATTGGCATTGATGATTTTGGTTTCGTTATGCAAATAACTGCAGCTCCATAAAAGTTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAGACCAGTGAACAAGAACTTCAGGTTGGTGTTTCAACATTAAAACTCCTTGATTCTCTTCTTTCTCATAATAGTAATAGTAATAATAGAAAGAAACAGTTAACATCTAATGCTATATAAAAAATGTGCTAATGGACGAAATTGTTGGACAGGCTCTTGTAAGAACAATTAACAATGTATCTATATTTTGTTGGGAATCTTACATATGACATAATGTGAAGATTATATTTATCTATATTTGTTATTGGAGAATTATCATATATTAATATTATATGTAATGAAGCATGTGTAACCATTACCTAAATCTCCCATCTCTTTATCAGATTACTCTGCTCCGAAGATACTTTCAATTCATCCTTTTGAAATTGCTCATGAATGAATAAAACAAAATTACTATTTCTTACTTTACAGGCTCTTGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGAAGTATGAAGTTCCAACCAATTTCAATTTCAATTTCAATCTCTGTACAAGCTGCATCGTGCTTATTTTGTTGGCATGCAACTCTTCACCGTGGTCGGCACCTTCACAGTCTTTTGTTCATACTAATGACAAGTTGTGATGTAGAAATAGAATTCTATGTAACCTAATTTTCCCAAGATTAAGCTGTCCATTCATTTCATGGTTTGTTCACAATCAACTAAGCACATGTGTTTACTCACTCTGTCAAGTTAAATAGGTAACAGTTATATTTCAAAATTAAATCTATCATCCAAGTAGTTTTTCCACCTTGCCTGAAATTCCTTCCCATGAATGGAATTTTAAAGTTTAGGTTGTAACCCTTTTCCGATAACATCTCTACACATTTCAAACCGAATTCCATACCGGTATTTCGTTACATTTCATCCCCTCTTTATCTTTTACTTACAATTTAACTCTTTTTTTTTCTTC

mRNA sequence

GTTCAGTAGTGTGCTTCTCGACTTTCTTCATTCTTCTCGGAGATTGGATTTTCACGGTGGCCATGACGGTGGACGACGACAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACTTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGGCGGGTTGTCCGAGTTAATGGAGTGAAGAGTCGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAGCTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCATGATCTACCAAGGGATCAATTTTTGGATAGGGAGCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCTGATTTGAGTGGAGGCAGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGAAGAGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACGGTCTTACAATTGAAGGTCGAACTGCACGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACGCAGCTGATCAAGCTCCATAAAAGTTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAGACCAGTGAACAAGAACTTCAGGCTCTTGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGAAGTATGAAGTTCCAACCAATTTCAATTTCAATTTCAATCTCTGTACAAGCTGCATCGTGCTTATTTTGTTGGCATGCAACTCTTCACCGTGGTCGGCACCTTCACAGTCTTTTGTTCATACTAATGACAAGTTGTGATGTAGAAATAGAATTCTATGTAACCTAATTTTCCCAAGATTAAGCTGTCCATTCATTTCATGGTTTGTTCACAATCAACTAAGCACATGTGTTTACTCACTCTGTCAAGTTAAATAGGTAACAGTTATATTTCAAAATTAAATCTATCATCCAAGTAGTTTTTCCACCTTGCCTGAAATTCCTTCCCATGAATGGAATTTTAAAGTTTAGGTTGTAACCCTTTTCCGATAACATCTCTACACATTTCAAACCGAATTCCATACCGGTATTTCGTTACATTTCATCCCCTCTTTATCTTTTACTTACAATTTAACTCTTTTTTTTTCTTC

Coding sequence (CDS)

ATGACGGTGGACGACGACAGCTCGATATACGTCGGCGGTCTTCCTTACGATGCAACGGAGGATAGTTTGCGCAGAATCTTCGATTTGTACGGCGCCGTCGTCGCTGTTAAGATTATCAATGATCGTTCTACTAGGGGAAAGTGCTATGGCTTTGTTACTTTTACAAACCCTCGATCTGCTATTGATGCCATAAAAGACATGGATGGAAGGACTATTGAAGGGCGGGTTGTCCGAGTTAATGGAGTGAAGAGTCGACTTGGTGGAAGGTTTGGTAAAGAAGGTAATCGGTTCGATGCAGAGAGGGACGTGAGCTGGGAGAGGGATAGAGATCGAGGGAGGGATTATGATCATGATAGGTATCGTCATAGAGGTAGAAACAATGACTGGTCTAGAGATCATGATCGGTCTCGAGAACATGATTTGGACAAGGAAAGAGGATATAAGCATTCACAAGATCATGATCTACCAAGGGATCAATTTTTGGATAGGGAGCCAGAGTTGGAAAAAACTTCAAAGGATAATGAGAAGGTACATGACTTGAAGTTGAACCACGATCAAGATTGGGAAAAAGATCATGGTGCTGATTTGAGTGGAGGCAGAGGCATTGATAAAACTGATGATTATGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGAAGAGATAAAAGCCTTGACAATGACAGAGATCAAGTCTTAAGGAGAGATAACGGTCTTACAATTGAAGGTCGAACTGCACGGGATCTTTCATCTGATTCTAGTGATGATTATATCCATGAATTAAAGGAACAACTGGAGATATCAACAGAAAGATTGGAAGAACTTAGAAAAGAGGTTTCTCAAATAGAGGAGAGGTCAGGAGAGAAAGAAAAACTTGTGGTTGAGTTGCAAAAGAAAGCCAAGAAACTGGAAGATGCATTGATCAGTGCAAAGAAGCGCTCTTCATTCCGTCAGACGCAGCTGATCAAGCTCCATAAAAGTTTTCTGCTAGTAAAGGATTATTCTAAGAGACTTAAGACCAGTGAACAAGAACTTCAGGCTCTTGTTGAATCAACTGCAATAGAGAGTGATGTTGGATGA

Protein sequence

MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG*

Homology

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BLAST of CSPI02G01430 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.8e-11
Identity = 63/188 (33.51%), Postives = 87/188 (46.28%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKSRLGGR---------------FGKEGNRFDAERDVSWERDR 125
           K M GR +  +V+ VN  + ++GG                 G E   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR--------------HRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDL 164
               D D +R+R              HR R  D  RD +R RE + + +R     +D D 
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGD--RDLEREREREREFDRYMDGRRDRDG 190

[Close]

BLAST of CSPI02G01430 vs. ExPASy Swiss-Prot
Match: Q18409 (Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=6239 GN=rsp-6 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.6e-11
Identity = 58/161 (36.02%), Postives = 79/161 (49.07%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSAIDAIK 65
           D+ +YVGGLP DAT   L  IFD +G +  V +    + R   + FV + + R A DA++
Sbjct: 2   DAKVYVGGLPSDATSQELEEIFDRFGRIRKVWV----ARRPPGFAFVEYDDVRDAEDAVR 61

Query: 66  DMDGRTIEG---RVVRVNGVKSRLGGRFGKEGNR---------FDAERDVSWERDRDRGR 125
            +DG  I G   RV    G +   GGR G  G R         +  +R  S  R RDRGR
Sbjct: 62  ALDGSRICGVRARVELSTGQRRGGGGRGGGFGGRGGGGRDRSPYRGDRGRSRSRSRDRGR 121

Query: 126 DYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHD 155
           D   DR R R R+    R  +RSRE +  + R  +  Q+ D
Sbjct: 122 DRSRDRSRDRSRDRSRDRSRERSRERERTRSRS-RSPQERD 157

[Close]

BLAST of CSPI02G01430 vs. ExPASy Swiss-Prot
Match: Q66II8 (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp70 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.8e-10
Identity = 95/343 (27.70%), Postives = 154/343 (44.90%), Query Frame = 0


Query: 4   DDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKII-NDRSTRGKCYGFVTFTNPRSAID 63
           D   +++V  + YD TE  LRR F++YG +  + ++ N RS + + Y F+ + + R    
Sbjct: 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYNKRSGKPRGYAFIEYEHERDMHS 159

Query: 64  AIKDMDGRTIEGRVVRVNGVKS---------RLGGRFG----------------KEGNRF 123
           A K  DG+ I+GR V V+  +          RLGG  G                 + +R+
Sbjct: 160 AYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRY 219

Query: 124 DAERDVSWERDRD---RGRDYDHDRYRHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHD 183
           D ERD   ER+RD   R R+ D +R R R R+ +  R   RSRE + +++R  + S+D D
Sbjct: 220 D-ERDRDRERERDRRERSRERDKERERRRSRSRE-RRRRSRSREKE-ERKRSRERSRDKD 279

Query: 184 LPRDQFLDREPELEK--TSKDNEKVHDLKLNHDQDWEK---------DHGADL------S 243
             +D+  D+E + +K    K   +  + K   D+D EK             D+      +
Sbjct: 280 KDKDKDKDKEKDKDKDRDRKRRSRSRERKRERDRDREKKEDRVEGEVPESVDVPQDDAQT 339

Query: 244 GGRGID----KTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLR-------RDNGLTIEGRT 290
           G  GID    K +  +K+ D DR++   +D+  D DRD+  R       RD     +   
Sbjct: 340 GDLGIDGIELKQEPEEKNRDRDRERDREKDRDKDRDRDRDRRRSHRDRERDKDRERDRDR 399

[Close]

BLAST of CSPI02G01430 vs. ExPASy Swiss-Prot
Match: Q14011 (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-08
Identity = 54/163 (33.13%), Postives = 80/163 (49.08%), Query Frame = 0


Query: 5   DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDA 64
           D+  ++VGGL +D  E SL ++F  YG +  V ++ DR T R + +GFVTF N   A DA
Sbjct: 4   DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 65  IKDMDGRTIEGRVVRVNGV------KSRLGGRFGKEGNRFDAERDVSWERDRDRG---RD 124
           +  M+G++++GR +RV+        +SR G R G  G R          R   RG   R 
Sbjct: 64  MMAMNGKSVDGRQIRVDQAGKSSDNRSR-GYRGGSAGGRGFFRGGRGRGRGFSRGGGDRG 123

Query: 125 YDHDRYRHRGRNNDWSRDHDRSREHD---LDKERGYKHSQDHD 155
           Y  +R+  R      SRD+  SR       D+  G  +   +D
Sbjct: 124 YGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYD 165

[Close]

BLAST of CSPI02G01430 vs. ExPASy Swiss-Prot
Match: Q5RF83 (Cold-inducible RNA-binding protein OS=Pongo abelii OX=9601 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-08
Identity = 54/163 (33.13%), Postives = 80/163 (49.08%), Query Frame = 0


Query: 5   DDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDA 64
           D+  ++VGGL +D  E SL ++F  YG +  V ++ DR T R + +GFVTF N   A DA
Sbjct: 4   DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63

Query: 65  IKDMDGRTIEGRVVRVNGV------KSRLGGRFGKEGNRFDAERDVSWERDRDRG---RD 124
           +  M+G++++GR +RV+        +SR G R G  G R          R   RG   R 
Sbjct: 64  MMAMNGKSVDGRQIRVDQAGKSSDNRSR-GYRGGSAGGRGFFRGGRGRGRGFSRGGGDRG 123

Query: 125 YDHDRYRHRGRNNDWSRDHDRSREHD---LDKERGYKHSQDHD 155
           Y  +R+  R      SRD+  SR       D+  G  +   +D
Sbjct: 124 YGGNRFESRSGGYGGSRDYYSSRSQSGGYSDRSSGGSYRDSYD 165

[Close]

BLAST of CSPI02G01430 vs. ExPASy TrEMBL
Match: A0A0A0LIV9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV=1)

HSP 1 Score: 679.5 bits (1752), Expect = 7.8e-192
Identity = 359/360 (99.72%), Postives = 359/360 (99.72%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQD DLPRDQFLDREPELEKTSKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of CSPI02G01430 vs. ExPASy TrEMBL
Match: A0A5D3CHM1 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00030 PE=4 SV=1)

HSP 1 Score: 637.9 bits (1644), Expect = 2.6e-179
Identity = 340/360 (94.44%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQD DLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDY              DKSLDNDRDQVLRRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDY--------------DKSLDNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CSPI02G01430 vs. ExPASy TrEMBL
Match: A0A5A7V7D5 (Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001420 PE=4 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 2.9e-178
Identity = 338/360 (93.89%), Postives = 343/360 (95.28%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQD DLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDY              DKSLDNDRDQVLRRDN L
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDY--------------DKSLDNDRDQVLRRDNSL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CSPI02G01430 vs. ExPASy TrEMBL
Match: A0A1S3C6W1 (zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103497531 PE=4 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 2.9e-178
Identity = 338/360 (93.89%), Postives = 343/360 (95.28%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQD DLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDY              DKSLDNDRDQVLRRDN L
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDY--------------DKSLDNDRDQVLRRDNSL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CSPI02G01430 vs. ExPASy TrEMBL
Match: A0A6J1G3E0 (U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC111450445 PE=4 SV=1)

HSP 1 Score: 555.1 bits (1429), Expect = 2.2e-154
Identity = 301/360 (83.61%), Postives = 317/360 (88.06%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQD DLP+D  LDR PELEK  K NE+  DL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERVYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KL+H QDWEKDH AD +GG GID TDDY              DKSL +DRDQ+ RRDNGL
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDY--------------DKSLGSDRDQLSRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
            IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKK
Sbjct: 241 AIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CSPI02G01430 vs. NCBI nr
Match: XP_004139331.2 (U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothetical protein Csa_019381 [Cucumis sativus])

HSP 1 Score: 679.5 bits (1752), Expect = 1.6e-191
Identity = 359/360 (99.72%), Postives = 359/360 (99.72%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQD DLPRDQFLDREPELEKTSKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPRDQFLDREPELEKTSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360

[Close]

BLAST of CSPI02G01430 vs. NCBI nr
Match: TYK10694.1 (zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 637.9 bits (1644), Expect = 5.4e-179
Identity = 340/360 (94.44%), Postives = 344/360 (95.56%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQD DLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDY              DKSLDNDRDQVLRRDNGL
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDY--------------DKSLDNDRDQVLRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CSPI02G01430 vs. NCBI nr
Match: XP_008457973.1 (PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061579.1 zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 634.4 bits (1635), Expect = 5.9e-178
Identity = 338/360 (93.89%), Postives = 343/360 (95.28%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATED+LRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDTLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDV+WERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVNWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRDHDRSREHDLDKERGYKHSQD DLP+DQFLDR+PELEKTSKDNEK+HDL
Sbjct: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDRDLPKDQFLDRDPELEKTSKDNEKLHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQDWEKDHGADLSGG GIDKTDDY              DKSLDNDRDQVLRRDN L
Sbjct: 181 KLNHDQDWEKDHGADLSGGGGIDKTDDY--------------DKSLDNDRDQVLRRDNSL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK
Sbjct: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CSPI02G01430 vs. NCBI nr
Match: XP_038889756.1 (serine/threonine-protein kinase prpf4B [Benincasa hispida])

HSP 1 Score: 592.8 bits (1527), Expect = 2.0e-165
Identity = 318/360 (88.33%), Postives = 331/360 (91.94%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGR+IEGRVVRVNGVKSR GGRFG+EGNRFD ERDVSWERDRDRGRDYDHDRY
Sbjct: 61  IDAIKDMDGRSIEGRVVRVNGVKSRSGGRFGREGNRFDVERDVSWERDRDRGRDYDHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           RHRGRNNDWSRD DRSREHDLDKERGY+HSQDHD P+D+ LDR+PELEK+SKDNEKVHDL
Sbjct: 121 RHRGRNNDWSRDRDRSREHDLDKERGYEHSQDHDPPKDKLLDRDPELEKSSKDNEKVHDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KLNHDQD EK+HGAD  GG GID  DDY              +KSLDNDR+Q+ RRDNGL
Sbjct: 181 KLNHDQDSEKNHGADWIGGGGIDNADDY--------------EKSLDNDRNQLSRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
           T EGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLV+ELQKK
Sbjct: 241 TSEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVIELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLKTSEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKTSEQELQALVESTAIESDVG 346

[Close]

BLAST of CSPI02G01430 vs. NCBI nr
Match: XP_023547216.1 (U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 556.2 bits (1432), Expect = 2.1e-154
Identity = 301/360 (83.61%), Postives = 317/360 (88.06%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA
Sbjct: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
           IDAIKDMDGRTIEGRVVRVNGV +R GGRFG+E NRFD ERDV+WERDRDRGRDY+HDRY
Sbjct: 61  IDAIKDMDGRTIEGRVVRVNGVNTRGGGRFGRESNRFDVERDVNWERDRDRGRDYEHDRY 120

Query: 121 RHRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKVHDL 180
           R RGRNNDWSR+ DRSREHDLDKER Y+HSQD DLP+D  LDR PELEK  K NE+  DL
Sbjct: 121 RRRGRNNDWSRERDRSREHDLDKERAYEHSQDRDLPKDILLDRNPELEKIPKANEQERDL 180

Query: 181 KLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRDNGL 240
           KL+H QDWEKDH AD +GG GID TDDY              DKSL +DRDQ+ RRDNGL
Sbjct: 181 KLSHGQDWEKDHDADWNGGGGIDNTDDY--------------DKSLGSDRDQLSRRDNGL 240

Query: 241 TIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVELQKK 300
            IEGRTAR+LSSDSSDDYIHELKEQLEISTER EELRKE+SQIEER+GEK KLVVELQKK
Sbjct: 241 AIEGRTARELSSDSSDDYIHELKEQLEISTERFEELRKEISQIEERTGEKGKLVVELQKK 300

Query: 301 AKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIESDVG 360
           AKKLEDALISAKKRSSFRQ QL KLHKSFLLVKDYS+RLK SEQELQALVESTAIESDVG
Sbjct: 301 AKKLEDALISAKKRSSFRQMQLTKLHKSFLLVKDYSERLKISEQELQALVESTAIESDVG 346

[Close]

BLAST of CSPI02G01430 vs. TAIR 10
Match: AT5G19960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.0e-55
Identity = 158/363 (43.53%), Postives = 210/363 (57.85%), Query Frame = 0


Query: 1   MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
           MT+DD +S+YVGGLPYD TE+++RR+F +YG+V+ VKI+NDRS RGKCYGFVTF+N RSA
Sbjct: 1   MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60

Query: 61  IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRD--YDHD 120
            DAI+DMDG++I GR VRVN V +R GGR      R        W+R  DR  D  Y+ D
Sbjct: 61  DDAIEDMDGKSIGGRAVRVNDVTTR-GGRMNPGPGRLQPHG--GWDRSPDRRSDGNYERD 120

Query: 121 RYRHRGRNNDWSRDHDRSREHD-LDKERGYKHSQDHDLPRDQFLDREPELEKTSKDNEKV 180
           RY  R R  D  R  DR ++H  ++KER Y+HS D +   D       ++   +   E+V
Sbjct: 121 RYSDRSRERD--RSQDRRKDHRYIEKERAYEHSHDFERRNDH------DMVDRNGYKERV 180

Query: 181 HDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRRDKSLDNDRDQVLRRD 240
            D     + DW  D  + +  GRGI+ T                   S    R Q  +R+
Sbjct: 181 FD---GDEGDWRGDR-SYVDNGRGINGT-------------------SAHEGRSQETKRE 240

Query: 241 NGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVEL 300
           +   ++G   RD  S+SS D  H++KE LE   +  E LR EV  +EER   KE +  EL
Sbjct: 241 DSTILDGGRGRDHFSNSSGD--HQVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSEL 300

Query: 301 QKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALVESTAIES 360
           QKK+K+LED LI+ KK  S R+ +L KLHKS+  V++ +  LK  EQELQ LV S A E 
Sbjct: 301 QKKSKRLEDLLINEKKLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLVNSAAREG 327

[Close]

BLAST of CSPI02G01430 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-15
Identity = 43/90 (47.78%), Postives = 57/90 (63.33%), Query Frame = 0


Query: 7   SSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIK 66
           S +++GG+ Y   EDSLR  F  YG VV  ++I DR T R + +GFVTFT+  +A  AI+
Sbjct: 40  SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99

Query: 67  DMDGRTIEGRVVRVNGVKSRL-GGRFGKEG 95
            +DGR + GRVV+VN    R  GG FG  G
Sbjct: 100 ALDGRDLHGRVVKVNYANDRTSGGGFGGGG 129

[Close]

BLAST of CSPI02G01430 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-12
Identity = 63/188 (33.51%), Postives = 87/188 (46.28%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKSRLGGR---------------FGKEGNRFDAERDVSWERDR 125
           K M GR +  +V+ VN  + ++GG                 G E   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR--------------HRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDL 164
               D D +R+R              HR R  D  RD +R RE + + +R     +D D 
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGD--RDLEREREREREFDRYMDGRRDRDG 190

[Close]

BLAST of CSPI02G01430 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 70.1 bits (170), Expect = 4.2e-12
Identity = 63/188 (33.51%), Postives = 87/188 (46.28%), Query Frame = 0


Query: 6   DSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAI 65
           +S I+VGGL +D TE  L   FD YG +   +I+  R T R + +GF+TFT+ R A DAI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  KDMDGRTIEGRVVRVNGVKSRLGGR---------------FGKEGNRFDAERDVSWERDR 125
           K M GR +  +V+ VN  + ++GG                 G E   F   R   W RD 
Sbjct: 71  KHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKGTEDECFKCRRPGHWARDC 130

Query: 126 DRGRDYDHDRYR--------------HRGRNNDWSRDHDRSREHDLDKERGYKHSQDHDL 164
               D D +R+R              HR R  D  RD +R RE + + +R     +D D 
Sbjct: 131 PSTGD-DRERFRVPLAMRSRIGDIDGHRDRYGD--RDLEREREREREFDRYMDGRRDRDG 190

[Close]

BLAST of CSPI02G01430 vs. TAIR 10
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-05
Identity = 69/253 (27.27%), Postives = 107/253 (42.29%), Query Frame = 0


Query: 9   IYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRST-RGKCYGFVTFTNPRSAIDAIKDM 68
           +YVGG+P+D TE  L  +F  YG +V V +I D+ T + K + F+ + + RS I A+ ++
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 69  DGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWE-----RDRDRGR-------DY 128
           +G  + GR ++V+       G + K     +  R  + E     R   RG         +
Sbjct: 98  NGALVLGRTIKVDHC-----GAYKKHEEEDEETRRQNREARGVCRAFQRGECTRGDSCKF 157

Query: 129 DHDRYRHRGRNNDWSRDHDRSREHDLDKE-------RGYKHSQDHDLPRDQFLDREPELE 188
            HD    R  N  W  + DRS + D DK        R ++  +       +F   E    
Sbjct: 158 SHD--EKRAANTGWGHEEDRSSKWDHDKNREGRGVCRAFQRGECTRGDSCKFSHDEKRAA 217

Query: 189 KTSKDNEKVHDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSL--DNDRDQVLRRDKSL 240
            T   +E+    K + D+      G    G RG  K D  +KS     D D    R K  
Sbjct: 218 TTGWGHEEDRSSKWDQDKLNGAKKGGTSFGNRGDFKPDVEEKSYRGRGDGDASYGRPK-- 277

The following BLAST results are available for this feature:

BLAST of CSPI02G01430 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22703	5.8e-11	33.51	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q18409	7.6e-11	36.02	Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis elegans OX=62...	[more]
Q66II8	3.8e-10	27.70	U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis OX=8364 GN=snrnp...	[more]
Q14011	1.6e-08	33.13	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1	[more]
Q5RF83	1.6e-08	33.13	Cold-inducible RNA-binding protein OS=Pongo abelii OX=9601 GN=CIRBP PE=2 SV=1	[more]

BLAST of CSPI02G01430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIV9	7.8e-192	99.72	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G005930 PE=4 SV...	[more]
A0A5D3CHM1	2.6e-179	94.44	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7V7D5	2.9e-178	93.89	Zinc finger CCCH domain-containing protein 25 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3C6W1	2.9e-178	93.89	zinc finger CCCH domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1G3E0	2.2e-154	83.61	U1 small nuclear ribonucleoprotein 70 kDa OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]

BLAST of CSPI02G01430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139331.2	1.6e-191	99.72	U1 small nuclear ribonucleoprotein 70 kDa [Cucumis sativus] >KGN60647.1 hypothet...	[more]
TYK10694.1	5.4e-179	94.44	zinc finger CCCH domain-containing protein 25 [Cucumis melo var. makuwa]	[more]
XP_008457973.1	5.9e-178	93.89	PREDICTED: zinc finger CCCH domain-containing protein 25 [Cucumis melo] >KAA0061...	[more]
XP_038889756.1	2.0e-165	88.33	serine/threonine-protein kinase prpf4B [Benincasa hispida]	[more]
XP_023547216.1	2.1e-154	83.61	U1 small nuclear ribonucleoprotein 70 kDa [Cucurbita pepo subsp. pepo]	[more]

BLAST of CSPI02G01430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19960.1	1.0e-55	43.53	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	1.4e-15	47.78	glycine-rich RNA-binding protein 3	[more]
AT1G60650.1	4.2e-12	33.51	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	4.2e-12	33.51	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G47120.1	1.3e-05	27.27	RNA recognition motif (RRM)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 332..352
None	No IPR available	COILS	Coil	Coil	coord: 259..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..212
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..358
None	No IPR available	PANTHER	PTHR23147:SF172	RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 1..358
None	No IPR available	CDD	cd00590	RRM_SF	coord: 9..80 e-value: 1.4682E-22 score: 88.1309
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 e-value: 1.4E-23 score: 94.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 e-value: 4.7E-21 score: 74.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..84 score: 19.58716
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..96 e-value: 3.5E-24 score: 87.3
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G01430.1	CSPI02G01430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0016607	nuclear speck
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding