CSPI02G01260 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G01260
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 845752 .. 846108 (+)
RNA-Seq ExpressionCSPI02G01260
SyntenyCSPI02G01260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCATCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAAGCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCGGTAATTTCGTCGAACATCTTCAAAGCACAGGCAAAAAAAAAAAAAAGGAAAAAAAGAAACTAGTTGACTGTAGCATAGTTTAGATTCTGAAACAGGGTATGTGAAAACAAGAGATAATCGTTTTCCATGGGCCTACGGTTTTTCTGCAACTTGA

mRNA sequence

ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCATCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAAGCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCGTTTAGATTCTGAAACAGGGTATGTGAAAACAAGAGATAATCGTTTTCCATGGGCCTACGGTTTTTCTGCAACTTGA

Coding sequence (CDS)

ATGCTGCCGGCGCCGGTACAGCTAAATCTACAAAATTCACTCGGTAATTTCGTCGAACACCTTCCGAGCAAAAAAAATAAAGCTGTAAAACTCCGGTCATCCGTGCCGGCGCCGGTGTACGATCACTTTATAACTATTGGGCAACCCGATATTCAAACCGGAAAAGCGCTGGCAGCGTCCGAAAAATCAACTGAGTTCTGTCGTTTAGATTCTGAAACAGGGTATGTGAAAACAAGAGATAATCGTTTTCCATGGGCCTACGGTTTTTCTGCAACTTGA

Protein sequence

MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSSVPAPVYDHFITIGQPDIQTGKALAASEKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT*
Homology
[Close]
BLAST of CSPI02G01260 vs. ExPASy TrEMBL
Match: A0A0A0LFW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004770 PE=4 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 8.2e-45
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0 

Query: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSSVPAPVYDHFITIGQPDIQTGKALAAS 60
          MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRS VPAPVYDHFITIGQPDIQTGK+LAAS
Sbjct: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS 60

Query: 61 EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT 93
          EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT
Sbjct: 61 EKSTEFCRLDSETGYVKTRDNRFPWAYGFSAT 92

[Close]
BLAST of CSPI02G01260 vs. NCBI nr
Match: KAE8651517.1 (hypothetical protein Csa_019416, partial [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 0 

Query: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSSVPAPVYDHFITIGQPDIQTGKALAAS 60
          MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRS VPAPVYDHFITIGQPDIQTGK+LAAS
Sbjct: 1  MLPAPVQLNLQNSLGNFVEHLPSKKNKAVKLRSPVPAPVYDHFITIGQPDIQTGKSLAAS 60

Query: 61 EKSTEFCR 69
          EKSTEFCR
Sbjct: 61 EKSTEFCR 68

The following BLAST results are available for this feature:
BLAST of CSPI02G01260 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G01260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFW18.2e-4597.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G004770 PE=4 SV=1[more]
BLAST of CSPI02G01260 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651517.11.0e-2897.06hypothetical protein Csa_019416, partial [Cucumis sativus][more]
BLAST of CSPI02G01260 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G01260.1CSPI02G01260.1mRNA