CSPI02G00850 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G00850
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Cytochrome B5-like protein
Location	Chr2: 511807 .. 512025 (-)
RNA-Seq Expression	CSPI02G00850
Synteny	CSPI02G00850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGCAGAGCGTCGTCGTCGAGGAGATGAAAGGATGCGGCTCAACTTTGTACCGCCGGCGCCATAATTTATTTAACTCCGGGCCGAAACCGAGGTTTAAGCCAAAGGGGAAGCCAGGCCTGAGCTGTAACGCAAGCCGAAGCCGAAGCAGAAAGTCAGGCCCGTCCCAAAACCGAAGCTTGGGCCCAATTTCAAGCTCAAGCCCAAGCCTGAAT

mRNA sequence

ATGGCGGTGCAGAGCGTCGTCGTCGAGGAGATGAAAGGATGCGGCTCAACTTTGTACCGCCGGCGCCATAATTTATTTAACTCCGGGCCGAAACCGAGGTTTAAGCCAAAGGGGAAGCCAGGCCTGAGCTGTAACGCAAGCCGAAGCCGAAGCAGAAAGTCAGGCCCGTCCCAAAACCGAAGCTTGGGCCCAATTTCAAGCTCAAGCCCAAGCCTGAAT

Coding sequence (CDS)

ATGGCGGTGCAGAGCGTCGTCGTCGAGGAGATGAAAGGATGCGGCTCAACTTTGTACCGCCGGCGCCATAATTTATTTAACTCCGGGCCGAAACCGAGGTTTAAGCCAAAGGGGAAGCCAGGCCTGAGCTGTAACGCAAGCCGAAGCCGAAGCAGAAAGTCAGGCCCGTCCCAAAACCGAAGCTTGGGCCCAATTTCAAGCTCAAGCCCAAGCCTGAAT

Protein sequence

MAVQSVVVEEMKGCGSTLYRRRHNLFNSGPKPRFKPKGKPGLSCNASRSRSRKSGPSQNRSLGPISSSSPSLN

Homology

[Close]

BLAST of CSPI02G00850 vs. ExPASy TrEMBL
Match: A0A0A0LFU2 (Cytochrome b5 heme-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000900 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 4.7e-19
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0


Query: 11 MKGCGSTLYRRRHNLFNSGPKPRFKPKGKPGLSCNASRSRSRKSGPSQNRS 62
          MKGCGSTLYRRRHNLFNSGPKPRFKPKGKPGLSCNAS SRSRKSGPSQNRS
Sbjct: 1  MKGCGSTLYRRRHNLFNSGPKPRFKPKGKPGLSCNASPSRSRKSGPSQNRS 51

[Close]

BLAST of CSPI02G00850 vs. ExPASy TrEMBL
Match: A0A5A7V3T0 (Cytochrome B5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00880 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 11 MKGCGSTLYRRRHNLFNSGPKPRFKPKGKPGLSCN 46
          MKGC STLYRRR NLFNS PKPR KPKGK GLS N
Sbjct: 1  MKGCNSTLYRRRQNLFNSEPKPRSKPKGKSGLSRN 35

[Close]

BLAST of CSPI02G00850 vs. ExPASy TrEMBL
Match: A0A5D3CHS0 (Cytochrome B5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00570 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 11 MKGCGSTLYRRRHNLFNSGPKPRFKPKGKPGLSCN 46
          MKGC STLYRRR NLFNS PKPR KPKGK GLS N
Sbjct: 1  MKGCNSTLYRRRQNLFNSEPKPRSKPKGKSGLSRN 35

[Close]

BLAST of CSPI02G00850 vs. NCBI nr
Match: KAA0061527.1 (cytochrome B5-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 4.2e-06
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 11 MKGCGSTLYRRRHNLFNSGPKPRFKPKGKPGLSCN 46
          MKGC STLYRRR NLFNS PKPR KPKGK GLS N
Sbjct: 1  MKGCNSTLYRRRQNLFNSEPKPRSKPKGKSGLSRN 35

[Close]

BLAST of CSPI02G00850 vs. NCBI nr
Match: TYK10744.1 (cytochrome B5-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 4.2e-06
Identity = 29/35 (82.86%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 11 MKGCGSTLYRRRHNLFNSGPKPRFKPKGKPGLSCN 46
          MKGC STLYRRR NLFNS PKPR KPKGK GLS N
Sbjct: 1  MKGCNSTLYRRRQNLFNSEPKPRSKPKGKSGLSRN 35

The following BLAST results are available for this feature:

BLAST of CSPI02G00850 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G00850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFU2	4.7e-19	98.04	Cytochrome b5 heme-binding domain-containing protein OS=Cucumis sativus OX=3659 ...	[more]
A0A5A7V3T0	2.0e-06	82.86	Cytochrome B5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5D3CHS0	2.0e-06	82.86	Cytochrome B5-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of CSPI02G00850 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061527.1	4.2e-06	82.86	cytochrome B5-like protein [Cucumis melo var. makuwa]	[more]
TYK10744.1	4.2e-06	82.86	cytochrome B5-like protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G00850 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G00850.1	CSPI02G00850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding