CSPI02G00430 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G00430
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 261250 .. 261792 (-)
RNA-Seq Expression	CSPI02G00430
Synteny	CSPI02G00430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGCAACTCAAAATTGTTATTCATGTAGAGCGGAAATTAAAGGCTTTCAAGTGTCGTTCTGGTAGAATGGAAATGCCGAATTGGATGGCTTGTATCTCCCCCAGGTTCAGAAAAATGTTGGGTGAAGTGACCGAGAGCTTTGTTGAAGTCGTGGCGAAGATGGTGGAGGAGCAAAAAATTAAGATAATTGGATTTCATGCTGCTTTCACGTTTGCTATTGCAGCGCTGTCGGTACAAGCTAAAGCTAAACTCCCTGATTCTTTTGAGTTCCTATCCATTACCAGTTTACTTTGTTTACTGTGTTTTGTGTCTGCAATGATAATAGATTTCAGTTTTAAGACCTTTGCAAAGGTCCTATACTTTCTAGGTGCCTTCTTTTGTATGACCAGTTACCTAATAGCAGCTGCGATCCCCAGCCAAATGTACTTCCATGTCCTTCTAATTCTTCTCTTCCTTATATCTTGCATCACACTTGTTATACTCATGTCCAACACATGCAGCCCTCCTAATTCCACAACCAATGATCTTCCTCTCTAA

mRNA sequence

ATGGATTGGCAACTCAAAATTGTTATTCATGTAGAGCGGAAATTAAAGGCTTTCAAGTGTCGTTCTGGTAGAATGGAAATGCCGAATTGGATGGCTTGTATCTCCCCCAGGTTCAGAAAAATGTTGGGTGAAGTGACCGAGAGCTTTGTTGAAGTCGTGGCGAAGATGGTGGAGGAGCAAAAAATTAAGATAATTGGATTTCATGCTGCTTTCACGTTTGCTATTGCAGCGCTGTCGGTACAAGCTAAAGCTAAACTCCCTGATTCTTTTGAGTTCCTATCCATTACCAGTTTACTTTGTTTACTGTGTTTTGTGTCTGCAATGATAATAGATTTCAGTTTTAAGACCTTTGCAAAGGTCCTATACTTTCTAGGTGCCTTCTTTTGTATGACCAGTTACCTAATAGCAGCTGCGATCCCCAGCCAAATGTACTTCCATGTCCTTCTAATTCTTCTCTTCCTTATATCTTGCATCACACTTGTTATACTCATGTCCAACACATGCAGCCCTCCTAATTCCACAACCAATGATCTTCCTCTCTAA

Coding sequence (CDS)

ATGGATTGGCAACTCAAAATTGTTATTCATGTAGAGCGGAAATTAAAGGCTTTCAAGTGTCGTTCTGGTAGAATGGAAATGCCGAATTGGATGGCTTGTATCTCCCCCAGGTTCAGAAAAATGTTGGGTGAAGTGACCGAGAGCTTTGTTGAAGTCGTGGCGAAGATGGTGGAGGAGCAAAAAATTAAGATAATTGGATTTCATGCTGCTTTCACGTTTGCTATTGCAGCGCTGTCGGTACAAGCTAAAGCTAAACTCCCTGATTCTTTTGAGTTCCTATCCATTACCAGTTTACTTTGTTTACTGTGTTTTGTGTCTGCAATGATAATAGATTTCAGTTTTAAGACCTTTGCAAAGGTCCTATACTTTCTAGGTGCCTTCTTTTGTATGACCAGTTACCTAATAGCAGCTGCGATCCCCAGCCAAATGTACTTCCATGTCCTTCTAATTCTTCTCTTCCTTATATCTTGCATCACACTTGTTATACTCATGTCCAACACATGCAGCCCTCCTAATTCCACAACCAATGATCTTCCTCTCTAA

Protein sequence

MDWQLKIVIHVERKLKAFKCRSGRMEMPNWMACISPRFRKMLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITSLLCLLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCSPPNSTTNDLPL*

Homology

[Close]

BLAST of CSPI02G00430 vs. ExPASy TrEMBL
Match: A0A0A0LEV1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.8e-64
Identity = 139/140 (99.29%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 41  MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITSLLC 100
           MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEF+SITSLLC
Sbjct: 1   MLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLC 60

Query: 101 LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL 160
           LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL
Sbjct: 61  LLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITL 120

Query: 161 VILMSNTCSPPNSTTNDLPL 181
           VILMSNTCSPPNSTTNDLPL
Sbjct: 121 VILMSNTCSPPNSTTNDLPL 140

[Close]

BLAST of CSPI02G00430 vs. ExPASy TrEMBL
Match: A0A0A0LCY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-19
Identity = 69/144 (47.92%), Postives = 94/144 (65.28%), Query Frame = 0


Query: 38  FRKMLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITS 97
           FR+  G V  S +EVVA+MVEE+K  IIGF  +    IA +SVQ K KLP+SF+FLSI  
Sbjct: 13  FRQTYGGVRRS-LEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAV 72

Query: 98  LLCLLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISC 157
           L+C L    A +I   FKT +K+LY  G F C T   IA AIP   +FH+++I+L+ I C
Sbjct: 73  LICFLSVGFARMISSIFKTLSKILYCFGGFLCATCCFIATAIPYDTHFHIIVIVLYSIFC 132

Query: 158 ITLVILMSNTCSPPN-STTNDLPL 181
           I  V+L+S T +P + S+++ LPL
Sbjct: 133 IIFVMLISITHNPSSPSSSHTLPL 155

[Close]

BLAST of CSPI02G00430 vs. ExPASy TrEMBL
Match: A0A0A0LQP5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.0e-10
Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 0


Query: 50  VEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITSLLCLLCFVSAMI 109
           +E+VA+ VEE+K  IIG   +    I   SVQ K KLP+SF+ LS+  LLC +  V A +
Sbjct: 26  LEIVAETVEERKEFIIGLCVSSAIGIVTTSVQIKTKLPNSFQCLSMPILLCFVSVVFARM 85

Query: 110 IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP-SQMYFHVLLILL---FLISCITLVILMS 169
           I+  F+T +++LY +G F C T+  IA AI     +FH ++I+L   F I CI  +I +S
Sbjct: 86  IESVFRTLSEILYCVGDFMCATTCFIATAISYDDAHFHTIVIVLYSIFCIICIIFIIFIS 145

Query: 170 NTCSPPNSTTN 177
            T + P+S ++
Sbjct: 146 ITHNDPSSPSS 156

[Close]

BLAST of CSPI02G00430 vs. ExPASy TrEMBL
Match: A0A0A0LSX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 48/103 (46.60%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 38  FRKMLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITS 97
           FR+  G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ LSI  
Sbjct: 12  FRQAYGGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAV 71

Query: 98  LLCLLCFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 141
           LLC +  V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 72  LLCFVSVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 113

[Close]

BLAST of CSPI02G00430 vs. ExPASy TrEMBL
Match: A0A0A0LQB6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 4.5e-07
Identity = 45/124 (36.29%), Postives = 72/124 (58.06%), Query Frame = 0


Query: 52  VVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKA--KLPDSFEFLSITSLLCLLCFVSAMI 111
           +VA+MVEE K  I+    +    IA +SVQ +   +LP +F+FLSI  LLC      A +
Sbjct: 39  MVAEMVEEWKEMIVALCVSSAIGIATVSVQIETNKQLPKTFQFLSIVVLLCFGFVGFAKM 98

Query: 112 IDFSFKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 171
               FKT +K+LY +G F  +T++ IA AIP   YF +++ +L+L+ C   +++ +    
Sbjct: 99  TKPIFKTVSKILYCVGGFLGVTAFFIATAIPFAPYFQIIIFILYLLFCFIFMLITTIHNQ 158

Query: 172 PPNS 174
            P+S
Sbjct: 159 QPSS 162

[Close]

BLAST of CSPI02G00430 vs. NCBI nr
Match: KAE8651492.1 (hypothetical protein Csa_019452 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-55
Identity = 123/144 (85.42%), Postives = 128/144 (88.89%), Query Frame = 0


Query: 1   MDWQLKIVIHVERKLKAFKCRSGRMEMPNWMACISPRFRKMLGEVTESFVEVVAKMVEEQ 60
           MDWQLKIVIHVERKLKAFKCRSGR+EMPNWMACISPRFRKMLGEVTESFVEVVAKMVEEQ
Sbjct: 1   MDWQLKIVIHVERKLKAFKCRSGRVEMPNWMACISPRFRKMLGEVTESFVEVVAKMVEEQ 60

Query: 61  KIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITSLLCLLCFVSAMIIDFSFKTFAK- 120
           KIKIIGFHAAFTFAIAALSVQAKAKLPDSFEF+SITSLLCLLCFVSAMIIDFSFKTFAK 
Sbjct: 61  KIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFVSITSLLCLLCFVSAMIIDFSFKTFAKD 120

Query: 121 ----VLYFL-----GAFFCMTSYL 135
                L+ L       + C+ SYL
Sbjct: 121 ARASFLHSLLQSVHSTYICIWSYL 144

[Close]

BLAST of CSPI02G00430 vs. NCBI nr
Match: KAE8652531.1 (hypothetical protein Csa_013077, partial [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-08
Identity = 46/98 (46.94%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 43  GEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITSLLCLL 102
           G V  SF EV A+MVEE K  IIGF  +    IA +SV  K +LP+SF+ LSI  LLC +
Sbjct: 3   GGVRRSF-EVAAEMVEEWKDMIIGFCVSSAIGIATVSVHIKTELPNSFQLLSIAVLLCFV 62

Query: 103 CFVSAMIIDFSFKTFAKVLYFLGAFFCMTSYLIAAAIP 141
             V A +I+  F+T +K+LY +G     +S  IA AIP
Sbjct: 63  SVVFARMINSIFETLSKILYCVGGLLYASSCFIATAIP 99

[Close]

BLAST of CSPI02G00430 vs. NCBI nr
Match: KGN60003.2 (hypothetical protein Csa_000735, partial [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 8.5e-08
Identity = 43/84 (51.19%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 38  FRKMLGEVTESFVEVVAKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITS 97
           FR+  G V  S +EVVA+MVEE+K  IIGF  +    IA +SVQ K KLP+SF+FLSI  
Sbjct: 13  FRQTYGGVRRS-LEVVAEMVEERKEMIIGFCLSSAIGIATVSVQTKTKLPNSFQFLSIAV 72

Query: 98  LLCLLCFVSAMIIDFSFKTFAKVL 122
           L+C L    A +I   FKT +K+L
Sbjct: 73  LICFLSVGFARMISSIFKTLSKIL 95

[Close]

BLAST of CSPI02G00430 vs. NCBI nr
Match: KAG6572911.1 (hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-05
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 54  AKMVEEQKIKIIGFHAAFTFAIAALSVQAKAKLPDSFEFLSITSLLCLLCFVSAMIIDFS 113
           A+MVEE K  I+ F  +   AIA +SVQ + KLP  F FLS+T LLC        +    
Sbjct: 37  AEMVEEWKDMIVAFCVSSAIAIATVSVQIEKKLPRVFNFLSLTLLLCFGFVAFGKMTKSI 96

Query: 114 FKTFAKVLYFLGAFFCMTSYLIAAAIPSQMYFHVLLILLFLISCITLVILMSNTCS 170
            K  +++LY +G    +T+  IA+AIP   YF +++ L++LI  +  +++   + S
Sbjct: 97  LKRVSRILYCVGGVLGVTALFIASAIPYASYFQIIIFLIYLIFWLMFMLVAHKSSS 152

The following BLAST results are available for this feature:

BLAST of CSPI02G00430 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G00430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEV1	1.8e-64	99.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000430 PE=4 SV=1	[more]
A0A0A0LCY2	2.3e-19	47.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851175 PE=4 SV=1	[more]
A0A0A0LQP5	2.0e-10	40.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040510 PE=4 SV=1	[more]
A0A0A0LSX4	1.7e-09	46.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1	[more]
A0A0A0LQB6	4.5e-07	36.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1	[more]

BLAST of CSPI02G00430 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651492.1	1.9e-55	85.42	hypothetical protein Csa_019452 [Cucumis sativus]	[more]
KAE8652531.1	5.0e-08	46.94	hypothetical protein Csa_013077, partial [Cucumis sativus]	[more]
KGN60003.2	8.5e-08	51.19	hypothetical protein Csa_000735, partial [Cucumis sativus]	[more]
KAG6572911.1	3.9e-05	35.34	hypothetical protein SDJN03_26798, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI02G00430 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34741	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 49..163
None	No IPR available	PANTHER	PTHR34741:SF2	IMAP FAMILY MEMBER 1, PUTATIVE-RELATED	coord: 49..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G00430.1	CSPI02G00430.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003677	DNA binding