CSPI02G00050 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G00050
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DEAD-box ATP-dependent RNA helicase
Location	Chr2: 77225 .. 78713 (-)
RNA-Seq Expression	CSPI02G00050
Synteny	CSPI02G00050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAGCAGCATCAAATATACCAACGAAGGGGTGAAAACGACAACGAAGAAAATGGTTAAAGAGGGTGAGGTTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGACTCTACTCTATGCGACCAACTCCGAGGTGTGTTGTGTGCCGCCTTTATTCTCTTCCTTTTCCAATGTCTATTTATTACCTGCCTTCTGCTATGCTAATCGTTCTAGAGTTTTACTTCAAGAGCTGTTGAAGATTTAGGGTATTCGGTTAATTGCATTGATTCTCATATTGGTCTGCATCTTTTGGTGTCACGTTTCTTCCATCTGGACAGATAAAATGGGATTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTGTATCCTTTGAGGCTTTTGCCCCCTCAATGAAAGTTGGTGCCTCATCAATCAAATTATTTATGATAAGAAACTGATATTCTATTATAGAAAAACATATACAAAAAGGGGCTATTTGGACATGGACATTGATTCTCTATCTCGATCACATATAATTGCATTGAAGGGTCATCTATCTTTTGATATTTAGTTTTCTTAACTTCGATATGTAGTCTTGTTAATGCTGCCACAGGCACAGGCAAAACTGTCGCATATTTGGTTCCAATCATCCATCACTTACAGAAATCCGCTCGTAGGACTCAGCGGGCTGATGGAACTTTCGGTGTGTAGCATCAATGATATTTTTTTTTTCACTCTCAATTTTGCCTTTGCCTAATTATTTGTGGGATCTTTTCGAATGTAAAAAATAGACCAAAATATTAACAAATATAGCAATATATCCCTGTTTAGACACAAATAGACTATAATATTTTACCATATTTGTGAATATTTTCAACAATTTTATCATTTATAATAATTTTCCATTATTTATCTATATAATTTCTCTGCAATTATTTTTATATATACATACATATTTATATGTATAGCTATAGTATAGAAAACAAGAGACTAGTGCCTCCTCCCTAAAGGGGTCAAACAAAACCTTCTCATTCTAGTTTTTTCAGTGAGGACTTCTAATTAGCCTACAAAAATCTGGATTCCTTGTGCAACCACCGACTGAAGAGGATTTCCTGTTACCATGTACATATATCGTTAGGATAGGAGTGGGCCAAATGAACTAGAAGAACCTGACATGCAAGTTCCATACCTTTTCAATACTATGATTGATTGGGTCTTGAGAGGAAGGTAATAACGCAATATCGGTTTTCATCTTTCTCCCTAATTTACAACTACCTCAGGGGAGGCACACTGTCAGTAATCAAGTATCGTCTGGTGGCCACTGGCAATCATTCCACTCAGCTACCTCTCAAGGCAATAATCCTCCCGTTTACTTCCATTGCCACCAAGTCTGGCCGGAACAAGCTACTTGTTGTCCAACAATGCTACCAAAGCCAGAACAACCTTTACTACGAAAAGACCTATTGCCCAATTCTCTAA

mRNA sequence

ATGAGTAGCAGCATCAAATATACCAACGAAGGGGTGAAAACGACAACGAAGAAAATGGTTAAAGAGGGTGAGGTTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGACTCTACTCTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTTCTTGTTAATGCTGCCACAGGCACAGGCAAAACTGTCGCATATTTGGTTCCAATCATCCATCACTTACAGAAATCCGCTCGTAGGACTCAGCGGGCTGATGGAACTTTCGGTGTGGGAGGCACACTGTCAGTAATCAAGTATCGTCTGGTGGCCACTGGCAATCATTCCACTCAGCTACCTCTCAAGGCAATAATCCTCCCGTTTACTTCCATTGCCACCAAGTCTGGCCGGAACAAGCTACTTGTTGTCCAACAATGCTACCAAAGCCAGAACAACCTTTACTACGAAAAGACCTATTGCCCAATTCTCTAA

Coding sequence (CDS)

ATGAGTAGCAGCATCAAATATACCAACGAAGGGGTGAAAACGACAACGAAGAAAATGGTTAAAGAGGGTGAGGTTTTTGCTTCTTGTACTTTCGCCAGCCTCGGTCTGGACTCTACTCTATGCGACCAACTCCGAGATAAAATGGGATTTGAAGTTCCTACGCTTGTACAGGCTCAAGCAATTCCGGCTATTTTATCCAGGCGTCATGTTCTTGTTAATGCTGCCACAGGCACAGGCAAAACTGTCGCATATTTGGTTCCAATCATCCATCACTTACAGAAATCCGCTCGTAGGACTCAGCGGGCTGATGGAACTTTCGGTGTGGGAGGCACACTGTCAGTAATCAAGTATCGTCTGGTGGCCACTGGCAATCATTCCACTCAGCTACCTCTCAAGGCAATAATCCTCCCGTTTACTTCCATTGCCACCAAGTCTGGCCGGAACAAGCTACTTGTTGTCCAACAATGCTACCAAAGCCAGAACAACCTTTACTACGAAAAGACCTATTGCCCAATTCTCTAA

Protein sequence

MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGVGGTLSVIKYRLVATGNHSTQLPLKAIILPFTSIATKSGRNKLLVVQQCYQSQNNLYYEKTYCPIL*

Homology

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BLAST of CSPI02G00050 vs. ExPASy Swiss-Prot
Match: Q7XJN0 (DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-26
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 4   SIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPA 63
           S + T +  K  +K   K G +FASC+F+SLGLD+ L DQL+++MGFE PTLVQAQAIP 
Sbjct: 7   SARETKQEAKDASK--AKSG-LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPV 66

Query: 64  ILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           ILS R VLVNA TGTGKT+AYL P+IHHLQ  + +  R+ GTF +
Sbjct: 67  ILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. ExPASy Swiss-Prot
Match: Q0DLB9 (DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 GN=RH17 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-24
Identity = 56/98 (57.14%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 11  GVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHV 70
           G     K+  KEG +FASC+F  LGL  TLC  L+DKMGF+ PT +QAQAIP  +S +H+
Sbjct: 6   GKSPVAKEEDKEG-LFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHM 65

Query: 71  LVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           LV AATGTGKT+AYL PI+H LQ    R +R DGTF +
Sbjct: 66  LVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFAL 102

[Close]

BLAST of CSPI02G00050 vs. ExPASy Swiss-Prot
Match: A6SNX1 (ATP-dependent RNA helicase dbp9 OS=Botryotinia fuckeliana (strain B05.10) OX=332648 GN=dbp9 PE=3 SV=2)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 30 TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPII 89
          TFASLGLD+ L   +  K  F+ PTLVQ++AIP  L  R +L  A TG+GKT AYL+PI+
Sbjct: 25 TFASLGLDARLLQGIA-KQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPIL 84

Query: 90 HHLQK 95
          H + K
Sbjct: 85 HSILK 88

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BLAST of CSPI02G00050 vs. ExPASy Swiss-Prot
Match: A7EM78 (ATP-dependent RNA helicase dbp9 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) OX=665079 GN=dbp9 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.3e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 30 TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPII 89
          TFASLGLD+ L   +  K  F+ PTLVQ++AIP  L  R +L  A TG+GKT AYL+PI+
Sbjct: 25 TFASLGLDARLLQGIA-KQNFQSPTLVQSKAIPLTLEGRDILARAKTGSGKTAAYLLPIL 84

Query: 90 HHLQK 95
          H + K
Sbjct: 85 HSILK 88

[Close]

BLAST of CSPI02G00050 vs. ExPASy Swiss-Prot
Match: Q9H8H2 (Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 8.2e-11
Identity = 45/142 (31.69%), Postives = 73/142 (51.41%), Query Frame = 0


Query: 2   SSSIKYTNEGVKTTTKKMVK--EGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQ 61
           +SS+   N  +    + +VK  + +VF S  F  LGL   L   +   +     T VQ Q
Sbjct: 201 TSSLFKNNPDIPELHRPVVKQVQEKVFTSAAFHELGLHPHLISTINTVLKMSSMTSVQKQ 260

Query: 62  AIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGVGGTLSVIKYRL 121
           +IP +L  R  LV + TG+GKT+AY +P++  LQ    + QR+DG +     L ++  R 
Sbjct: 261 SIPVLLEGRDALVRSQTGSGKTLAYCIPVVQSLQAMESKIQRSDGPY----ALVLVPTRE 320

Query: 122 VATGNHSTQLPLKAIILPFTSI 142
           +A  +  T   ++ ++ PFT I
Sbjct: 321 LALQSFDT---VQKLLKPFTWI 335

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BLAST of CSPI02G00050 vs. ExPASy TrEMBL
Match: A0A0A0LKK2 (Q_MOTIF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000050 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.8e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 108

[Close]

BLAST of CSPI02G00050 vs. ExPASy TrEMBL
Match: A0A1S3CCT2 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498955 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 6.0e-49
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIEYINEGVKTTAKKMVKEGEIFASCTFASLGLDPTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQRADGTFG+
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTFGI 108

[Close]

BLAST of CSPI02G00050 vs. ExPASy TrEMBL
Match: A0A1S3CB30 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498955 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 5.1e-48
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIEYINEGVKTTAKKMVKEGEIFASCTFASLGLDPTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQRADGTF +
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. ExPASy TrEMBL
Match: A0A6J1G427 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111450551 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 9.3e-42
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 9   NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRR 68
           NEG+KTTTKKMVKE E+FASCTFASLGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS R
Sbjct: 2   NEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGR 61

Query: 69  HVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           HVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF +
Sbjct: 62  HVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFSL 101

[Close]

BLAST of CSPI02G00050 vs. ExPASy TrEMBL
Match: A0A6J1G419 (DEAD-box ATP-dependent RNA helicase 17 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111450551 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 9.3e-42
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 9   NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRR 68
           NEG+KTTTKKMVKE E+FASCTFASLGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS R
Sbjct: 2   NEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGR 61

Query: 69  HVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           HVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF +
Sbjct: 62  HVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFSL 101

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: XP_004141076.1 (DEAD-box ATP-dependent RNA helicase 17 [Cucumis sativus] >KGN60526.2 hypothetical protein Csa_019328 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-50
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTF +
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: XP_008460023.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucumis melo])

HSP 1 Score: 203.8 bits (517), Expect = 1.2e-48
Identity = 101/108 (93.52%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIEYINEGVKTTAKKMVKEGEIFASCTFASLGLDPTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQRADGTFG+
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTFGI 108

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: XP_008460014.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucumis melo])

HSP 1 Score: 200.7 bits (509), Expect = 1.1e-47
Identity = 100/108 (92.59%), Postives = 103/108 (95.37%), Query Frame = 0


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MSSSI+Y NEGVKTT KKMVKEGE+FASCTFASLGLD TLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSSSIEYINEGVKTTAKKMVKEGEIFASCTFASLGLDPTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKS RRTQRADGTF +
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSTRRTQRADGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: XP_038890369.1 (DEAD-box ATP-dependent RNA helicase 17-like [Benincasa hispida])

HSP 1 Score: 190.7 bits (483), Expect = 1.1e-44
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 0


Query: 1   MSSSIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60
           MS S KY NEG+K+TTKKMVKE E+FASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA
Sbjct: 1   MSGSTKYMNEGMKSTTKKMVKEDEIFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQA 60

Query: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           IPAILSRRHVLVNAATGTGKTVAYLVPIIHH+ KS RR QRADGTF +
Sbjct: 61  IPAILSRRHVLVNAATGTGKTVAYLVPIIHHMLKSDRRIQRADGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. NCBI nr
Match: XP_022946513.1 (DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata] >XP_023546293.1 DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179.9 bits (455), Expect = 1.9e-41
Identity = 89/100 (89.00%), Postives = 94/100 (94.00%), Query Frame = 0


Query: 9   NEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRR 68
           NEG+KTTTKKMVKE E+FASCTFASLGL +TLCD+LRDKMGFEVPTLVQAQAIPAILS R
Sbjct: 2   NEGMKTTTKKMVKEDEIFASCTFASLGLHATLCDELRDKMGFEVPTLVQAQAIPAILSGR 61

Query: 69  HVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           HVLVNAATGTGKTVAYLVPIIHHLQKS RR QRADGTF +
Sbjct: 62  HVLVNAATGTGKTVAYLVPIIHHLQKSDRRIQRADGTFSL 101

[Close]

BLAST of CSPI02G00050 vs. TAIR 10
Match: AT2G40700.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.7e-27
Identity = 62/105 (59.05%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 4   SIKYTNEGVKTTTKKMVKEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPA 63
           S + T +  K  +K   K G +FASC+F+SLGLD+ L DQL+++MGFE PTLVQAQAIP 
Sbjct: 7   SARETKQEAKDASK--AKSG-LFASCSFSSLGLDTKLSDQLKERMGFEAPTLVQAQAIPV 66

Query: 64  ILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQRADGTFGV 109
           ILS R VLVNA TGTGKT+AYL P+IHHLQ  + +  R+ GTF +
Sbjct: 67  ILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFAL 108

[Close]

BLAST of CSPI02G00050 vs. TAIR 10
Match: AT1G12770.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.1e-10
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = 0


Query: 12  VKTTTKKMVKE-------GEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAI 71
           VK    K+VKE         +F++ +F  LGL  +L D L ++ GF VPT VQ+ A+PAI
Sbjct: 86  VKNDKMKVVKEKKPAEIVSPLFSAKSFEELGLPDSLLDSL-EREGFSVPTDVQSAAVPAI 145

Query: 72  LSRRHVLVNAATGTGKTVAYLVPIIHHLQKSARRTQ 101
           +     ++ + TG+GKT+AYL+PI+  +   A +++
Sbjct: 146 IKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSR 180

[Close]

BLAST of CSPI02G00050 vs. TAIR 10
Match: AT4G34910.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.2e-09
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 21  KEGEVFASCTFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGK 80
           ++ E  A  +F  LGLDS L   L  K G E PTL+Q  AIP IL  + V+  A TG+GK
Sbjct: 38  EQKEEEAPKSFEELGLDSRLIRAL-TKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGK 97

Query: 81  TVAYLVPIIHHL 93
           T+AYL+P++  L
Sbjct: 98  TLAYLLPLLQKL 108

[Close]

BLAST of CSPI02G00050 vs. TAIR 10
Match: AT1G59990.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-09
Identity = 41/98 (41.84%), Postives = 54/98 (55.10%), Query Frame = 0


Query: 3   SSIKYTNEGVKTTTKKMVKEGE--VFASCT--FASLGLDSTLCDQLRDKMGFEVPTLVQA 62
           S  K+       T  ++ K+G    FA  T  + SLGL   +   LRD  GF+ P+L QA
Sbjct: 50  SDRKWVRGFASATEAEVEKKGNDTFFADHTVSWKSLGLSDNVSIALRDS-GFDRPSLTQA 109

Query: 63  QAIPAILSRRHVLVNAATGTGKTVAYLVPIIHHLQKSA 97
             IP+ILS + V+V A TG+GKT  YL PII  L  +A
Sbjct: 110 VCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTA 146

[Close]

BLAST of CSPI02G00050 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.5e-09
Identity = 31/79 (39.24%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 30  TFASLGLDSTLCDQLRDKMGFEVPTLVQAQAIPAILSRRHVLVNAATGTGKTVAYLVPII 89
           TF   G  S +   ++ K  +E PT +Q QA+P +LS R V+  A TG+GKT A+++P+I
Sbjct: 229 TFEDCGFSSQIMSAIK-KQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMI 288

Query: 90  HHLQKSARRTQRADGTFGV 109
            H+       QR +G  GV
Sbjct: 289 VHIMDQP-ELQRDEGPIGV 305

The following BLAST results are available for this feature:

BLAST of CSPI02G00050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJN0	2.4e-26	59.05	DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana OX=3702 GN=RH17 P...	[more]
Q0DLB9	2.9e-24	57.14	DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
A6SNX1	6.3e-11	53.85	ATP-dependent RNA helicase dbp9 OS=Botryotinia fuckeliana (strain B05.10) OX=332...	[more]
A7EM78	6.3e-11	53.85	ATP-dependent RNA helicase dbp9 OS=Sclerotinia sclerotiorum (strain ATCC 18683 /...	[more]
Q9H8H2	8.2e-11	31.69	Probable ATP-dependent RNA helicase DDX31 OS=Homo sapiens OX=9606 GN=DDX31 PE=1 ...	[more]

BLAST of CSPI02G00050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKK2	5.8e-52	100.00	Q_MOTIF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G000050 PE=...	[more]
A0A1S3CCT2	6.0e-49	93.52	DEAD-box ATP-dependent RNA helicase 17 isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A1S3CB30	5.1e-48	92.59	DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1G427	9.3e-42	89.00	DEAD-box ATP-dependent RNA helicase 17 isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1G419	9.3e-42	89.00	DEAD-box ATP-dependent RNA helicase 17 isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]

BLAST of CSPI02G00050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004141076.1	1.3e-50	98.15	DEAD-box ATP-dependent RNA helicase 17 [Cucumis sativus] >KGN60526.2 hypothetica...	[more]
XP_008460023.1	1.2e-48	93.52	PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X2 [Cucumis melo]	[more]
XP_008460014.1	1.1e-47	92.59	PREDICTED: DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucumis melo]	[more]
XP_038890369.1	1.1e-44	87.96	DEAD-box ATP-dependent RNA helicase 17-like [Benincasa hispida]	[more]
XP_022946513.1	1.9e-41	89.00	DEAD-box ATP-dependent RNA helicase 17 isoform X1 [Cucurbita moschata] >XP_02354...	[more]

BLAST of CSPI02G00050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G40700.1	1.7e-27	59.05	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G12770.1	1.1e-10	37.50	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G34910.1	1.2e-09	47.22	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G59990.1	3.5e-09	41.84	DEA(D/H)-box RNA helicase family protein	[more]
AT2G47330.1	3.5e-09	39.24	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 55..98 e-value: 2.3E-11 score: 43.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 3..144 e-value: 3.3E-24 score: 87.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 25..98
None	No IPR available	PANTHER	PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	coord: 16..97
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 29..58 score: 9.40962

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G00050.1	CSPI02G00050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003676	nucleic acid binding