CSPI01G32540 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G32540
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr1: 27356154 .. 27356489 (-)
RNA-Seq ExpressionCSPI01G32540
SyntenyCSPI01G32540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGACATTGGTGTAAAGTGTGGATGGTCACTCTCTTATGTGCAAGAAGTGACGCAGTCTGAAGCTCCAAAGTCGACTATTGAGCAGGGTGGTATTCCAACTGGGTGTTGCTATATTTTTGTGGATGCCGCTTGTTCATCTGTTCGGAATGCGTCTGGTGTAGGTGTTGCGGCATTGGATGCTTGTAGGAATGTTTTAGGGGCAGTTGCTAAACAATTATCAAATCCTTTTAACCCCTTGCTTTCGGAAACTGCTGCTATCAAGGAAGGGGTTATTTGTTGCATACTCTGTGTTGTGGCCATTTCTCTCTGATTGTCTTACTTCAGTTCAATT

mRNA sequence

ATGCCGGACATTGGTGTAAAGTGTGGATGGTCACTCTCTTATGTGCAAGAAGTGACGCAGTCTGAAGCTCCAAAGTCGACTATTGAGCAGGGTGGTATTCCAACTGGGTGTTGCTATATTTTTGTGGATGCCGCTTGTTCATCTGTTCGGAATGCGTCTGGTGTAGGTGTTGCGGCATTGGATGCTTGTAGGAATGTTTTAGGGGCAGTTGCTAAACAATTATCAAATCCTTTTAACCCCTTGCTTTCGGAAACTGCTGCTATCAAGGAAGGGGTTATTTGTTGCATACTCTGTGTTGTGGCCATTTCTCTCTGATTGTCTTACTTCAGTTCAATT

Coding sequence (CDS)

ATGCCGGACATTGGTGTAAAGTGTGGATGGTCACTCTCTTATGTGCAAGAAGTGACGCAGTCTGAAGCTCCAAAGTCGACTATTGAGCAGGGTGGTATTCCAACTGGGTGTTGCTATATTTTTGTGGATGCCGCTTGTTCATCTGTTCGGAATGCGTCTGGTGTAGGTGTTGCGGCATTGGATGCTTGTAGGAATGTTTTAGGGGCAGTTGCTAAACAATTATCAAATCCTTTTAACCCCTTGCTTTCGGAAACTGCTGCTATCAAGGAAGGGGTTATTTGTTGCATACTCTGTGTTGTGGCCATTTCTCTCTGA

Protein sequence

MPDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGVGVAALDACRNVLGAVAKQLSNPFNPLLSETAAIKEGVICCILCVVAISL*
Homology
[Close]
BLAST of CSPI01G32540 vs. ExPASy TrEMBL
Match: A0A0A0M389 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G660160 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.6e-43
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0 

Query: 1  MPDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGVGVAAL 60
          M DIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASG+GV AL
Sbjct: 1  MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVAL 60

Query: 61 DACRNVLGAVAKQLSNPFNPLLSETAAIKEG 92
          DACRNVLGAVAKQLSNPFNPLLSETAAIKEG
Sbjct: 61 DACRNVLGAVAKQLSNPFNPLLSETAAIKEG 91

[Close]
BLAST of CSPI01G32540 vs. NCBI nr
Match: KAE8653582.1 (hypothetical protein Csa_007063 [Cucumis sativus])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 90/93 (96.77%), Postives = 91/93 (97.85%), Query Frame = 0 

Query: 1  MPDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGVGVAAL 60
          M DIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASG+GV AL
Sbjct: 1  MRDIGVKCGWSLSYVQEVTQSEAPKSTIEQGGIPTGCCYIFVDAACSSVRNASGIGVVAL 60

Query: 61 DACRNVLGAVAKQLSNPFNPLLSETAAIKEGVI 94
          DACRNVLGAVAKQLSNPFNPLLSETAAIKEGVI
Sbjct: 61 DACRNVLGAVAKQLSNPFNPLLSETAAIKEGVI 93

The following BLAST results are available for this feature:
BLAST of CSPI01G32540 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI01G32540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M3896.6e-4396.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G660160 PE=4 SV=1[more]
BLAST of CSPI01G32540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8653582.12.1e-4396.77hypothetical protein Csa_007063 [Cucumis sativus][more]
BLAST of CSPI01G32540 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G32540.1CSPI01G32540.1mRNA