CSPI01G32480 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G32480
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Gag/pol protein
Location	Chr1: 27300791 .. 27301294 (-)
RNA-Seq Expression	CSPI01G32480
Synteny	CSPI01G32480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCAGTAGGTATCAGTCCAATCTTAAATATGATGACTGGACAACCGTTAATAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGTTCGTGTATGGTACTAAGGTTTTTATTTAAGCTTTATTTTTTTTTATTTATGACATCTTCTCAAGTAGTTGCCTTCTTGTTTGTCTGTTGTTATGTATTTTGTTTGCACGATTTAAACATCAGTATTTTAGGTGATTGTTGGCGGTGGAAGTGGTTTCATTGGTGGTGGTGGAGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCTAGCTGCTGCAGAAGCCCCAACTGAGAAGAAGGAAGAGAGTGATGATGAAAACCTTGACTTATCACTTCTTGATTAGATTGGTATTAATTACTTGTTATTGTTTTTGTCAATCTAAAAGATCTGTAAAATCAAAGAAGATAGAGCAAAGATTTTAATGGTGTTTTTAGCAATAGCAAGCAAGATAGTAGTAAATTTAATTTCGTTTC

mRNA sequence

ATGATCAGTAGGTATCAGTCCAATCTTAAATATGATGACTGGACAACCGTTAATAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGTTCGTGTATGGTACTAAGGTGATTGTTGGCGGTGGAAGTGGTTTCATTGGTGGTGGTGGAGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCTAGCTGCTGCAGAAGCCCCAACTGAGAAGAAGGAAGAGAGTGATGATGAAAACCTTGACTTATCACTTCTTGATTAGATTGGTATTAATTACTTGTTATTGTTTTTGTCAATCTAAAAGATCTGTAAAATCAAAGAAGATAGAGCAAAGATTTTAATGGTGTTTTTAGCAATAGCAAGCAAGATAGTAGTAAATTTAATTTCGTTTC

Coding sequence (CDS)

ATGATCAGTAGGTATCAGTCCAATCTTAAATATGATGACTGGACAACCGTTAATAATATTCTAAAATATCTTAGAAGAACAAAAGATTACATGTTCGTGTATGGTACTAAGGTGATTGTTGGCGGTGGAAGTGGTTTCATTGGTGGTGGTGGAGCTGCAGCTGCCCCTGCTGGAGGAGATGCTCTAGCTGCTGCAGAAGCCCCAACTGAGAAGAAGGAAGAGAGTGATGATGAAAACCTTGACTTATCACTTCTTGATTAG

Protein sequence

MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIVGGGSGFIGGGGAAAAPAGGDALAAAEAPTEKKEESDDENLDLSLLD*

Homology

[Close]

BLAST of CSPI01G32480 vs. ExPASy TrEMBL
Match: A0A5D3DVP5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00450 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.4e-08
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
          M+SRYQSN  +D WTTV NILKYLRRTKDYM VYGTK ++
Sbjct: 30 MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLI 69

[Close]

BLAST of CSPI01G32480 vs. ExPASy TrEMBL
Match: A0A5A7TX70 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G006440 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.8e-08
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
           M+SRYQSN + D WTT+ NILKYLRRTKDYM VYGTK ++
Sbjct: 140 MVSRYQSNPERDHWTTIKNILKYLRRTKDYMLVYGTKDLI 179

[Close]

BLAST of CSPI01G32480 vs. ExPASy TrEMBL
Match: A0A5D3CKJ8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001220 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.8e-08
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
          M+SRYQSN + D WTT+ NILKYLRRTKDYM VYGTK ++
Sbjct: 30 MVSRYQSNPERDHWTTIKNILKYLRRTKDYMLVYGTKDLI 69

[Close]

BLAST of CSPI01G32480 vs. ExPASy TrEMBL
Match: A0A5D3BQY5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00230 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-08
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1   MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
           M+SRYQSNL  D WT V NILKYLRRTKDYM VYGTK ++
Sbjct: 104 MVSRYQSNLGRDHWTIVKNILKYLRRTKDYMLVYGTKDLI 143

[Close]

BLAST of CSPI01G32480 vs. ExPASy TrEMBL
Match: A0A5A7VAF1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001660 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-08
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1   MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
           M+SRYQSNL  D WT V NILKYLRRTKDYM VYGTK ++
Sbjct: 104 MVSRYQSNLGRDHWTIVKNILKYLRRTKDYMLVYGTKDLI 143

[Close]

BLAST of CSPI01G32480 vs. NCBI nr
Match: KAA0025897.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK27816.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 7.0e-08
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
          M+SRYQSN  +D WTTV NILKYLRRTKDYM VYGTK ++
Sbjct: 30 MVSRYQSNPGHDHWTTVKNILKYLRRTKDYMLVYGTKDLI 69

[Close]

BLAST of CSPI01G32480 vs. NCBI nr
Match: KAA0046061.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1   MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
           M+SRYQSN + D WTT+ NILKYLRRTKDYM VYGTK ++
Sbjct: 140 MVSRYQSNPERDHWTTIKNILKYLRRTKDYMLVYGTKDLI 179

[Close]

BLAST of CSPI01G32480 vs. NCBI nr
Match: TYK11940.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 29/40 (72.50%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 1  MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
          M+SRYQSN + D WTT+ NILKYLRRTKDYM VYGTK ++
Sbjct: 30 MVSRYQSNPERDHWTTIKNILKYLRRTKDYMLVYGTKDLI 69

[Close]

BLAST of CSPI01G32480 vs. NCBI nr
Match: KAA0062649.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1   MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
           M+SRYQSNL  D WT V NILKYLRRTKDYM VYGTK ++
Sbjct: 104 MVSRYQSNLGRDHWTIVKNILKYLRRTKDYMLVYGTKDLI 143

[Close]

BLAST of CSPI01G32480 vs. NCBI nr
Match: TYK01182.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.2 bits (160), Expect = 1.6e-07
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 1   MISRYQSNLKYDDWTTVNNILKYLRRTKDYMFVYGTKVIV 41
           M+SRYQSNL  D WT V NILKYLRRTKDYM VYGTK ++
Sbjct: 104 MVSRYQSNLGRDHWTIVKNILKYLRRTKDYMLVYGTKDLI 143

The following BLAST results are available for this feature:

BLAST of CSPI01G32480 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G32480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DVP5	3.4e-08	75.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G0045...	[more]
A0A5A7TX70	5.8e-08	72.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G0064...	[more]
A0A5D3CKJ8	5.8e-08	72.50	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G0012...	[more]
A0A5D3BQY5	7.5e-08	75.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G002...	[more]
A0A5A7VAF1	7.5e-08	75.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00166...	[more]

BLAST of CSPI01G32480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025897.1	7.0e-08	75.00	gag/pol protein [Cucumis melo var. makuwa] >TYK27816.1 gag/pol protein [Cucumis ...	[more]
KAA0046061.1	1.2e-07	72.50	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK11940.1	1.2e-07	72.50	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062649.1	1.6e-07	75.00	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK01182.1	1.6e-07	75.00	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G32480 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G32480.1	CSPI01G32480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding