CSPI01G32250 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G32250
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty1-copia retrotransposon protein
Location	Chr1: 27033396 .. 27033907 (-)
RNA-Seq Expression	CSPI01G32250
Synteny	CSPI01G32250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCAAAAACAAAGTTCTACCCGACCTTCCAAACTGGAGTCACTCGACAGAATAAACTATCGCCGTTGGTCCTAGAAGTTACTGATCTTTTTCGAACAGCTTGAAGTAAACTACGTCCTCACCGTCGAACCACCAATCGATCCTCTAGCACCACCAATCGACCCTCCAGCACCCTCTGATCCAGAATCATCCACGGGATCCCTTGTCGTCACAGCTGACCAGGTAAAGAAAGCATCTGCAATTGATCCTGAGAAGTACAAGAAGGACAACAAGACAGTTCGTGGACATTTGTTGAACCATATGTCGGATCCCATGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAAGACATCTGGTGCATGCTAGAGTCTCGCTATGGTGGAGATGACGTTGGACGAAAGAACTACGTTGTGGGAAAATTGCTGCAGTTCCAAATGATAGATGATAAGCCAGTTATGGAACAGATACATGAGTATCTGGTGGCAAATGTCCTATCTGAAGATTGA

mRNA sequence

ATGTCGTTCAAAAACAAACTTGAAGTAAACTACGTCCTCACCGTCGAACCACCAATCGATCCTCTAGCACCACCAATCGACCCTCCAGCACCCTCTGATCCAGAATCATCCACGGGATCCCTTGTCGTCACAGCTGACCAGGTAAAGAAAGCATCTGCAATTGATCCTGAGAAGTACAAGAAGGACAACAAGACAGTTCGTGGACATTTGTTGAACCATATGTCGGATCCCATGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAAGACATCTGGTGCATGCTAGAGTCTCGCTATGGTGGAGATGACGTTGGACGAAAGAACTACGTTGTGGGAAAATTGCTGCAGTTCCAAATGATAGATGATAAGCCAGTTATGGAACAGATACATGAGTATCTGGTGGCAAATGTCCTATCTGAAGATTGA

Coding sequence (CDS)

ATGTCGTTCAAAAACAAACTTGAAGTAAACTACGTCCTCACCGTCGAACCACCAATCGATCCTCTAGCACCACCAATCGACCCTCCAGCACCCTCTGATCCAGAATCATCCACGGGATCCCTTGTCGTCACAGCTGACCAGGTAAAGAAAGCATCTGCAATTGATCCTGAGAAGTACAAGAAGGACAACAAGACAGTTCGTGGACATTTGTTGAACCATATGTCGGATCCCATGTTTGACTTGTTTGTAATCCAAAAATCTGCCAAAGACATCTGGTGCATGCTAGAGTCTCGCTATGGTGGAGATGACGTTGGACGAAAGAACTACGTTGTGGGAAAATTGCTGCAGTTCCAAATGATAGATGATAAGCCAGTTATGGAACAGATACATGAGTATCTGGTGGCAAATGTCCTATCTGAAGATTGA

Protein sequence

MSFKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSLVVTADQVKKASAIDPEKYKKDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEYLVANVLSED*

Homology

[Close]

BLAST of CSPI01G32250 vs. ExPASy TrEMBL
Match: A0A5A7U9X9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00270 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 105/142 (73.94%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSE 141
           DDKPVMEQIHEY  LVANVLSE
Sbjct: 154 DDKPVMEQIHEYENLVANVLSE 173

[Close]

BLAST of CSPI01G32250 vs. ExPASy TrEMBL
Match: A0A5D3BZI1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00770 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.8e-46
Identity = 105/142 (73.94%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSE 141
           DDKPVMEQIHEY  LVANVLSE
Sbjct: 154 DDKPVMEQIHEYENLVANVLSE 173

[Close]

BLAST of CSPI01G32250 vs. ExPASy TrEMBL
Match: A0A5D3CNJ2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold356G00110 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.1e-46
Identity = 104/142 (73.24%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSE 141
           DDKPV+EQIHEY  LVANVLSE
Sbjct: 154 DDKPVVEQIHEYENLVANVLSE 173

[Close]

BLAST of CSPI01G32250 vs. ExPASy TrEMBL
Match: A0A5A7UFB4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002340 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.1e-46
Identity = 104/143 (72.73%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      S+PESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPSSD--PPTTTSTSSNPESSTGPLTTVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSED 142
           DDKPV+EQIHEY  LVANVLSED
Sbjct: 154 DDKPVVEQIHEYENLVANVLSED 174

[Close]

BLAST of CSPI01G32250 vs. ExPASy TrEMBL
Match: A0A5D3BZH6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001760 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.1e-46
Identity = 104/142 (73.24%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSE 141
           DDKPV+EQIHEY  LVANVLSE
Sbjct: 154 DDKPVVEQIHEYENLVANVLSE 173

[Close]

BLAST of CSPI01G32250 vs. NCBI nr
Match: TYK04394.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 105/142 (73.94%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSE 141
           DDKPVMEQIHEY  LVANVLSE
Sbjct: 154 DDKPVMEQIHEYENLVANVLSE 173

[Close]

BLAST of CSPI01G32250 vs. NCBI nr
Match: KAA0051006.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195.3 bits (495), Expect = 3.6e-46
Identity = 105/142 (73.94%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSE 141
           DDKPVMEQIHEY  LVANVLSE
Sbjct: 154 DDKPVMEQIHEYENLVANVLSE 173

[Close]

BLAST of CSPI01G32250 vs. NCBI nr
Match: XP_008456453.1 (PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo])

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-45
Identity = 104/143 (72.73%), Postives = 110/143 (76.92%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      S+PESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPSSD--PPTTTSTSSNPESSTGPLTTVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSED 142
           DDKPV+EQIHEY  LVANVLSED
Sbjct: 154 DDKPVVEQIHEYENLVANVLSED 174

[Close]

BLAST of CSPI01G32250 vs. NCBI nr
Match: TYK11996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-45
Identity = 104/142 (73.24%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSE 141
           DDKPV+EQIHEY  LVANVLSE
Sbjct: 154 DDKPVVEQIHEYENLVANVLSE 173

[Close]

BLAST of CSPI01G32250 vs. NCBI nr
Match: TYK04957.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-45
Identity = 104/142 (73.24%), Postives = 109/142 (76.76%), Query Frame = 0


Query: 3   FKNKLEVNYVLTVEPPIDPLAPPIDPPAPSDPESSTGSL--VVTADQVKKASAIDPEKYK 62
           F  +LEV+YVLT + P     PP      SDPESSTG L  V   DQVKK   IDPEKY 
Sbjct: 34  FFEQLEVDYVLTTDLPTSD--PPTTTSTSSDPESSTGPLTAVAVTDQVKKDQVIDPEKYA 93

Query: 63  KDNKTVRGHLLNHMSDPMFDLFVIQKSAKDIWCMLESRYGGDDVGRKNYVVGKLLQFQMI 122
           KDNKTVRGHLLNHMSDPMFDLFV+QKSAKDIW  LESRYGGDD GRK YVVGK LQFQM 
Sbjct: 94  KDNKTVRGHLLNHMSDPMFDLFVVQKSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMT 153

Query: 123 DDKPVMEQIHEY--LVANVLSE 141
           DDKPV+EQIHEY  LVANVLSE
Sbjct: 154 DDKPVVEQIHEYENLVANVLSE 173

[Close]

BLAST of CSPI01G32250 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-06
Identity = 28/104 (26.92%), Postives = 57/104 (54.81%), Query Frame = 0


Query: 32  SDPESSTGSLVVTADQVKKASAIDP--EKYKKDNKTVRGHLLNHMSDPMFDLFVIQ-KSA 91
           S+P  S GS        ++ +  D   +K+ +D+     HL+N +SD ++  +  + K A
Sbjct: 224 SEPCPSIGSSQGPETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHA 283

Query: 92  KDIWCMLESRYGGDDVGRKNYVVGKLLQFQMIDDKPVMEQIHEY 133
           K++W  L+  Y  D+   K   V K ++F+M++++P++EQ+  +
Sbjct: 284 KELWDELKWVYQCDESKSKRSQVRKYIEFRMVEERPILEQVQVF 327

The following BLAST results are available for this feature:

BLAST of CSPI01G32250 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G32250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9X9	1.8e-46	73.94	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZI1	1.8e-46	73.94	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CNJ2	5.1e-46	73.24	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UFB4	5.1e-46	72.73	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZH6	5.1e-46	73.24	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CSPI01G32250 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04394.1	3.6e-46	73.94	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051006.1	3.6e-46	73.94	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008456453.1	1.1e-45	72.73	PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]	[more]
TYK11996.1	1.1e-45	73.24	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04957.1	1.1e-45	73.24	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G32250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00980.1	6.7e-06	26.92	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 60..131 e-value: 4.6E-8 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..32
None	No IPR available	PANTHER	PTHR47592:SF14	GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 32..136
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 32..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G32250.1	CSPI01G32250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding