CSPI01G31030 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G31030
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CACTA en-spm transposon protein
Location	Chr1: 25567162 .. 25567317 (+)
RNA-Seq Expression	CSPI01G31030
Synteny	CSPI01G31030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATGGTTCATGTTGGATTTCACAGATCCAAAACTTACTCGGTTCGTTGAGCATCAAATACTTACCATCTGGAAGGAGTTTAGGGGACAAAACCACCACCATTTAAAGAAGTTTAGTGATTCTGAACAGGCACGTGCTAACCCACCCCCAGATTGA

mRNA sequence

CAATGGTTCATGTTGGATTTCACAGATCCAAAACTTACTCGGTTCGTTGAGCATCAAATACTTACCATCTGGAAGGAGTTTAGGGGACAAAACCACCACCATTTAAAGAAGTTTAGTGATTCTGAACAGGCACGTGCTAACCCACCCCCAGATTGA

Coding sequence (CDS)

CAATGGTTCATGTTGGATTTCACAGATCCAAAACTTACTCGGTTCGTTGAGCATCAAATACTTACCATCTGGAAGGAGTTTAGGGGACAAAACCACCACCATTTAAAGAAGTTTAGTGATTCTGAACAGGCACGTGCTAACCCACCCCCAGATTGA

Protein sequence

QWFMLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPPPD*

Homology

[Close]

BLAST of CSPI01G31030 vs. ExPASy TrEMBL
Match: A0A5A7TQP9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold294G00320 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.0e-15
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   QWFMLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPPP 51
           QWF+LDFTD  LTRFVEHQIL+++KEFRGQNH H KKF D EQ RANPPP
Sbjct: 460 QWFVLDFTDLALTRFVEHQILSMYKEFRGQNHRHFKKFDDPEQVRANPPP 509

[Close]

BLAST of CSPI01G31030 vs. ExPASy TrEMBL
Match: A0A5D3D8C7 (Putative Transposase family tnp2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00320 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.0e-15
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   QWFMLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPPP 51
           QWF+LDFTD  LTRFVEHQIL+++KEFRGQNH H KKF D EQ RANPPP
Sbjct: 455 QWFVLDFTDLALTRFVEHQILSMYKEFRGQNHRHFKKFDDPEQVRANPPP 504

[Close]

BLAST of CSPI01G31030 vs. ExPASy TrEMBL
Match: A0A5D3DXP1 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00070 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   QWFMLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPPP 51
           QWF+L+F DP L +F+EHQ+LT WK+FRGQNH+H KKFSD EQA ANPPP
Sbjct: 90  QWFVLNFIDPTLAQFLEHQMLTYWKDFRGQNHYHFKKFSDHEQAHANPPP 139

[Close]

BLAST of CSPI01G31030 vs. ExPASy TrEMBL
Match: A0A5D3DUA8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00830 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 4   MLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPP 50
           MLDFTDP LTRFVEHQ+L  WK FRG+NH H KKFSD EQARANPP
Sbjct: 173 MLDFTDPTLTRFVEHQMLNTWKAFRGENHRHYKKFSDPEQARANPP 218

[Close]

BLAST of CSPI01G31030 vs. ExPASy TrEMBL
Match: A0A5A7TK83 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G001550 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 4   MLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPP 50
           MLDFTDP LTRFVEHQ+L  WK FRG+NH H KKFSD EQARANPP
Sbjct: 173 MLDFTDPTLTRFVEHQMLNTWKAFRGENHRHYKKFSDPEQARANPP 218

[Close]

BLAST of CSPI01G31030 vs. NCBI nr
Match: KAA0045434.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   QWFMLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPPP 51
           QWF+LDFTD  LTRFVEHQIL+++KEFRGQNH H KKF D EQ RANPPP
Sbjct: 460 QWFVLDFTDLALTRFVEHQILSMYKEFRGQNHRHFKKFDDPEQVRANPPP 509

[Close]

BLAST of CSPI01G31030 vs. NCBI nr
Match: TYK19802.1 (putative Transposase family tnp2 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 39/50 (78.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   QWFMLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPPP 51
           QWF+LDFTD  LTRFVEHQIL+++KEFRGQNH H KKF D EQ RANPPP
Sbjct: 455 QWFVLDFTDLALTRFVEHQILSMYKEFRGQNHRHFKKFDDPEQVRANPPP 504

[Close]

BLAST of CSPI01G31030 vs. NCBI nr
Match: XP_031741168.1 (uncharacterized protein LOC116403757 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 1   QWFMLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPP 50
           QWFMLDFTDP LTRFVE+Q+ T WKEF+GQNH H KKFSD EQARANPP
Sbjct: 120 QWFMLDFTDPTLTRFVEYQMRT-WKEFKGQNHRHFKKFSDPEQARANPP 167

[Close]

BLAST of CSPI01G31030 vs. NCBI nr
Match: TYK28105.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.3e-14
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 0


Query: 1   QWFMLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPPP 51
           QWF+L+F DP L +F+EHQ+LT WK+FRGQNH+H KKFSD EQA ANPPP
Sbjct: 90  QWFVLNFIDPTLAQFLEHQMLTYWKDFRGQNHYHFKKFSDHEQAHANPPP 139

[Close]

BLAST of CSPI01G31030 vs. NCBI nr
Match: TYK27078.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 3.3e-13
Identity = 37/46 (80.43%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 4   MLDFTDPKLTRFVEHQILTIWKEFRGQNHHHLKKFSDSEQARANPP 50
           MLDFTDP LTRFVEHQ+L  WK FRG+NH H KKFSD EQARANPP
Sbjct: 173 MLDFTDPTLTRFVEHQMLNTWKAFRGENHRHYKKFSDPEQARANPP 218

The following BLAST results are available for this feature:

BLAST of CSPI01G31030 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G31030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQP9	5.0e-15	78.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3D8C7	5.0e-15	78.00	Putative Transposase family tnp2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A5D3DXP1	1.1e-14	72.00	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3DUA8	1.6e-13	80.43	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TK83	1.6e-13	80.43	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of CSPI01G31030 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045434.1	1.0e-14	78.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK19802.1	1.0e-14	78.00	putative Transposase family tnp2 [Cucumis melo var. makuwa]	[more]
XP_031741168.1	2.3e-14	81.63	uncharacterized protein LOC116403757 [Cucumis sativus]	[more]
TYK28105.1	2.3e-14	72.00	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK27078.1	3.3e-13	80.43	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI01G31030 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G31030.1	CSPI01G31030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity