CSPI01G30820 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G30820
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CACTA en-spm transposon protein
Location	Chr1: 25303669 .. 25304329 (-)
RNA-Seq Expression	CSPI01G30820
Synteny	CSPI01G30820

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTTCCGAGTGGTATTCGTGAGGGAGATGTGTACCTGAACTTGGACACATTAGATAACGCGGAAGGATTGTCTTTGGTGGGAGAAACTTCAGGTTAGTCTCGTTACATAAAACCTGAGTAAGTACTTAAGTTTTTGGATTTTATAGTGTGTTTTTTTGTAGATGCTTCTCAATTCACTCTCACTCCCACTCTTAGGAGACGTCAGCACTCCCGAAACTTGGAGTTGGAAAGGTATGTACTGCAAATTGGAAGATCCTCATTTCAATCCCCTTAGAAGAGGACAAGCCTATCTCGCCACACCCCATTCGTTTCAGCTGCACAATCGATGTGTTAACGCGAGACACGTTTCCAATCCAGATTCTGAAGTGGGTTGATGTACCTCAAGAGTACATCGAGGTAGTCAAGGTTGGCCTATTAGTAAGTTTGTAAATTATTTAACACATATATATGTTAAACCTACATATGTAGAAGACTAATTCTTTTTTTTTTTTTTTTTGTAGCAATGGTTTGTGTTGGATTTCAAAGATTTAACACTTACTCGATTTGTTGAGTATCAAATGCACATAATGTGGAAGGAATTTAGGGGAGACAACCATTGCATTTCAATCAGTACATCGAACCTGAAGAAGCACATGCAAACCCACTGCCTAGATTGA

mRNA sequence

ATGTCATTTCCGAGTGGTATTCGTGAGGGAGATGTGTACCTGAACTTGGACACATTAGATAACGCGGAAGGATTGTCTTTGGTGGGAGAAACTTCAGATGCTTCTCAATTCACTCTCACTCCCACTCTTAGGAGACGTCAGCACTCCCGAAACTTGGAGTTGGAAAGCTGCACAATCGATGTGTTAACGCGAGACACGTTTCCAATCCAGATTCTGAAGTGGGTTGATGTACCTCAAGAGTACATCGAGGTAGTCAAGCAATGGTTTGTGTTGGATTTCAAAGATTTAACACTTACTCGATTTGTTGAGTATCAAATGCACATAATGTGGAAGGAATTTAGGGGAGACAACCATTGCATTTCAATCAGTACATCGAACCTGAAGAAGCACATGCAAACCCACTGCCTAGATTGA

Coding sequence (CDS)

ATGTCATTTCCGAGTGGTATTCGTGAGGGAGATGTGTACCTGAACTTGGACACATTAGATAACGCGGAAGGATTGTCTTTGGTGGGAGAAACTTCAGATGCTTCTCAATTCACTCTCACTCCCACTCTTAGGAGACGTCAGCACTCCCGAAACTTGGAGTTGGAAAGCTGCACAATCGATGTGTTAACGCGAGACACGTTTCCAATCCAGATTCTGAAGTGGGTTGATGTACCTCAAGAGTACATCGAGGTAGTCAAGCAATGGTTTGTGTTGGATTTCAAAGATTTAACACTTACTCGATTTGTTGAGTATCAAATGCACATAATGTGGAAGGAATTTAGGGGAGACAACCATTGCATTTCAATCAGTACATCGAACCTGAAGAAGCACATGCAAACCCACTGCCTAGATTGA

Protein sequence

MSFPSGIREGDVYLNLDTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELESCTIDVLTRDTFPIQILKWVDVPQEYIEVVKQWFVLDFKDLTLTRFVEYQMHIMWKEFRGDNHCISISTSNLKKHMQTHCLD*

Homology

[Close]

BLAST of CSPI01G30820 vs. ExPASy TrEMBL
Match: A0A5A7UIU7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G00030 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.7e-27
Identity = 69/119 (57.98%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MSFPSGIREGDVYLNL-DTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELESCTI 60
           MSFPSG  E D+YL L D  +NA GLS VG+T DA Q T +PT RR  HS+N+ELE C I
Sbjct: 94  MSFPSGFHEVDMYLKLDDVFNNAGGLSSVGDTLDAPQLTPSPTSRRLPHSKNMELERCAI 153

Query: 61  DVLTRDTFPIQILKWVDVPQEYIEVVKQWFVLDFKDLTLTRFVEYQMHIMWKEFRGDNH 119
            VLT++TFPI  LKW DV  EYI++VK    L   D  LT FVE+QM  MWKE + DNH
Sbjct: 154 SVLTQNTFPINALKWADVTPEYIQLVKG--SLQVSDQELTHFVEHQMLSMWKEIKRDNH 210

[Close]

BLAST of CSPI01G30820 vs. ExPASy TrEMBL
Match: A0A5D3CHK6 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00590 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.7e-27
Identity = 69/119 (57.98%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MSFPSGIREGDVYLNL-DTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELESCTI 60
           MSFPSG  E D+YL L D  +NA GLS VG+T DA Q T +PT RR  HS+N+ELE C I
Sbjct: 94  MSFPSGFHEVDMYLKLDDVFNNAGGLSSVGDTLDAPQLTPSPTSRRLPHSKNMELERCAI 153

Query: 61  DVLTRDTFPIQILKWVDVPQEYIEVVKQWFVLDFKDLTLTRFVEYQMHIMWKEFRGDNH 119
            VLT++TFPI  LKW DV  EYI++VK    L   D  LT FVE+QM  MWKE + DNH
Sbjct: 154 SVLTQNTFPINALKWADVTPEYIQLVKG--SLQVSDQELTHFVEHQMLSMWKEIKRDNH 210

[Close]

BLAST of CSPI01G30820 vs. ExPASy TrEMBL
Match: A0A5A7UC67 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001420 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.7e-18
Identity = 62/122 (50.82%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 1   MSFPSGIREGDVYLNL-DTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELESCTI 60
           MSF S   E ++YL L D  +NA G S VG TSD  Q TL  T RR Q+ + L   S  I
Sbjct: 280 MSFSSYFVETNLYLELDDAFNNARGSSSVGGTSDVPQPTLISTPRRCQYFQKLGF-SIVI 339

Query: 61  DVLTRDTFPIQILKWVDVPQEYIEVVKQ----WFVLDFKDLTLTRFVEYQMHIMWKEFRG 118
           DVLTR+TF      WVDV  +YIEVVK     WF  DF D  LTRFVE+QM   W +F+G
Sbjct: 340 DVLTRNTFSTTTFTWVDVTSKYIEVVKGGLHCWFEHDFGDQALTRFVEHQMFSTWNKFKG 399

[Close]

BLAST of CSPI01G30820 vs. ExPASy TrEMBL
Match: A0A5D3C9H4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001140 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 8.2e-17
Identity = 62/148 (41.89%), Postives = 80/148 (54.05%), Query Frame = 0


Query: 1   MSFPSGIREGDVYLNL--DTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELE--- 60
           MSFP+G  + +   +   D  +N  G SLVG+ SDA Q   + TL +R+HS NL+LE   
Sbjct: 10  MSFPNGFDKTNALFDFDADAFNNMGGTSLVGDMSDAFQ-PSSSTLGKRKHSMNLKLERDV 69

Query: 61  -------------------------SCTIDVLTRDTFPIQILKWVDVPQEYIEVVKQWFV 119
                                    SCTI++LT+DTFP   LKW +V  EYIE+V     
Sbjct: 70  KENGKIPISIAQGWDKSISSHIVCFSCTINMLTQDTFPTYFLKWANVTLEYIELVNG--- 129

[Close]

BLAST of CSPI01G30820 vs. ExPASy TrEMBL
Match: A0A5D3E1B0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001420 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.0e-15
Identity = 57/115 (49.57%), Postives = 71/115 (61.74%), Query Frame = 0


Query: 11  DVYLNL-DTLDN--AEGLSLVGETSDASQFTLTPTLRRRQHSRNLELESCTIDVLTRDTF 70
           D++L   D LDN  A G S VG+ +++S    TPT RRR  SR LELE   I V  R TF
Sbjct: 61  DMFLQFEDNLDNNIAGGSSSVGDNTESSSQQATPTPRRRAQSRLLELERHAIGVCVRKTF 120

Query: 71  PIQILKWVDVPQEYIEVVK----QWFVLDFKDLTLTRFVEYQMHIMWKEFRGDNH 119
            ++ LKW DV +EYI+VVK    + FV DF D  + RFVE+QM   +KEFR D H
Sbjct: 121 SVRCLKWADVGREYIKVVKGDLQRLFVPDFYDQAMNRFVEHQMLTTFKEFRADCH 175

[Close]

BLAST of CSPI01G30820 vs. NCBI nr
Match: TYK11015.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-26
Identity = 69/119 (57.98%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MSFPSGIREGDVYLNL-DTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELESCTI 60
           MSFPSG  E D+YL L D  +NA GLS VG+T DA Q T +PT RR  HS+N+ELE C I
Sbjct: 94  MSFPSGFHEVDMYLKLDDVFNNAGGLSSVGDTLDAPQLTPSPTSRRLPHSKNMELERCAI 153

Query: 61  DVLTRDTFPIQILKWVDVPQEYIEVVKQWFVLDFKDLTLTRFVEYQMHIMWKEFRGDNH 119
            VLT++TFPI  LKW DV  EYI++VK    L   D  LT FVE+QM  MWKE + DNH
Sbjct: 154 SVLTQNTFPINALKWADVTPEYIQLVKG--SLQVSDQELTHFVEHQMLSMWKEIKRDNH 210

[Close]

BLAST of CSPI01G30820 vs. NCBI nr
Match: KAA0054888.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.4e-26
Identity = 69/119 (57.98%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 1   MSFPSGIREGDVYLNL-DTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELESCTI 60
           MSFPSG  E D+YL L D  +NA GLS VG+T DA Q T +PT RR  HS+N+ELE C I
Sbjct: 94  MSFPSGFHEVDMYLKLDDVFNNAGGLSSVGDTLDAPQLTPSPTSRRLPHSKNMELERCAI 153

Query: 61  DVLTRDTFPIQILKWVDVPQEYIEVVKQWFVLDFKDLTLTRFVEYQMHIMWKEFRGDNH 119
            VLT++TFPI  LKW DV  EYI++VK    L   D  LT FVE+QM  MWKE + DNH
Sbjct: 154 SVLTQNTFPINALKWADVTPEYIQLVKG--SLQVSDQELTHFVEHQMLSMWKEIKRDNH 210

[Close]

BLAST of CSPI01G30820 vs. NCBI nr
Match: XP_031741168.1 (uncharacterized protein LOC116403757 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-21
Identity = 71/152 (46.71%), Postives = 84/152 (55.26%), Query Frame = 0


Query: 1   MSFPSGIREGDV--YLNLDTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELE--- 60
           MSF +   E D   Y N++  ++A G S VG+TSD SQ T   T RRR+HSRNL+L+   
Sbjct: 1   MSFSASFDESDALFYFNVNKFNDARGTSSVGDTSDGSQPT-ARTPRRREHSRNLKLDRYV 60

Query: 61  -------------------------SCTIDVLTRDTFPIQILKWVDVPQEYIEVVK---- 119
                                    SCTI  LTRDTFP   LKW     EYI++VK    
Sbjct: 61  QQNGKIPISIVPRKDKPISPHAIIFSCTIVELTRDTFPGHALKWTGTTPEYIKLVKDSLQ 120

[Close]

BLAST of CSPI01G30820 vs. NCBI nr
Match: KAA0052037.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK04524.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 62/122 (50.82%), Postives = 73/122 (59.84%), Query Frame = 0


Query: 1   MSFPSGIREGDVYLNL-DTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELESCTI 60
           MSF S   E ++YL L D  +NA G S VG TSD  Q TL  T RR Q+ + L   S  I
Sbjct: 280 MSFSSYFVETNLYLELDDAFNNARGSSSVGGTSDVPQPTLISTPRRCQYFQKLGF-SIVI 339

Query: 61  DVLTRDTFPIQILKWVDVPQEYIEVVKQ----WFVLDFKDLTLTRFVEYQMHIMWKEFRG 118
           DVLTR+TF      WVDV  +YIEVVK     WF  DF D  LTRFVE+QM   W +F+G
Sbjct: 340 DVLTRNTFSTTTFTWVDVTSKYIEVVKGGLHCWFEHDFGDQALTRFVEHQMFSTWNKFKG 399

[Close]

BLAST of CSPI01G30820 vs. NCBI nr
Match: KAA0048278.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK07980.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.7e-16
Identity = 62/148 (41.89%), Postives = 80/148 (54.05%), Query Frame = 0


Query: 1   MSFPSGIREGDVYLNL--DTLDNAEGLSLVGETSDASQFTLTPTLRRRQHSRNLELE--- 60
           MSFP+G  + +   +   D  +N  G SLVG+ SDA Q   + TL +R+HS NL+LE   
Sbjct: 10  MSFPNGFDKTNALFDFDADAFNNMGGTSLVGDMSDAFQ-PSSSTLGKRKHSMNLKLERDV 69

Query: 61  -------------------------SCTIDVLTRDTFPIQILKWVDVPQEYIEVVKQWFV 119
                                    SCTI++LT+DTFP   LKW +V  EYIE+V     
Sbjct: 70  KENGKIPISIAQGWDKSISSHIVCFSCTINMLTQDTFPTYFLKWANVTLEYIELVNG--- 129

The following BLAST results are available for this feature:

BLAST of CSPI01G30820 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI01G30820 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIU7	6.7e-27	57.98	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3CHK6	6.7e-27	57.98	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7UC67	5.7e-18	50.82	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3C9H4	8.2e-17	41.89	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3E1B0	2.0e-15	49.57	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of CSPI01G30820 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11015.1	1.4e-26	57.98	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0054888.1	1.4e-26	57.98	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
XP_031741168.1	2.3e-21	46.71	uncharacterized protein LOC116403757 [Cucumis sativus]	[more]
KAA0052037.1	1.2e-17	50.82	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK04524.1 CACTA en-...	[more]
KAA0048278.1	1.7e-16	41.89	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK07980.1 CACTA en-...	[more]

BLAST of CSPI01G30820 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G30820.1	CSPI01G30820.1	mRNA