CSPI01G30610 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI01G30610
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRNA-binding family protein
LocationChr1: 25108723 .. 25114607 (-)
RNA-Seq ExpressionCSPI01G30610
SyntenyCSPI01G30610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATGAAAAATCTAAAAAAATTGGGTTAGCGGGCAAACAAGAAACCCTTGTTTCGATCCCCAAAACCCCCCATCCTTTCTCCCATCGTCTTTCTTCTTCCCTCGCCATTTTTTAAGAACCAACAACCAGCTCTGACCAACATTTGATTACCCATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGGGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCATCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATGTTAGTTTTTCTGCTTCTCTCTTTCAGCATTTTTCTTCTTCTTCTTCTTCGTCTTCTTCTTCTTCTTCTTTATTACTTTATTTTGGCAGATTGGCGTTTACCATTTTGTTTTGCTGGTTTTTTTTTATTCTTTGGTTCATTAGAGTTAGGGTTATGAAAATTTGGATGGTTATTTACTTGGTAGGTGGCGGGTTTAGATGTATTTGCCTGTATGTTCTACGATAGGTTGCTTTTTCACCTCCTTCAATTTAGTTCAGAGTAAGCAAATCCCTTCCTTGAGCTTGAAGAGGTCTTGCTTACTGTTAATGTCGGTTGGTTTACTCCCTTCGTTTCCACAATGTCACAGATCTTAGCTAGAACTTGATATGGAATTTAATTGTAAACGAAAAGGATTCAAGTGATGTTGTGTGAAATTATCGTGGAATACATATAGTAAGAGAAAGTTCAAAGATTGAGCCTGCATTGCCTTATATCCCCAAAGCGGTGCACTTTCTGGAAGGGGCTGAGGAGTAAAATCACTTTTACATTCATCTGCCACCACGCCTACTCCAGTCCTCCTTTAGCAATTTCCATTTTTCTTCTTCTGGGTGAACTGGATCAACTGTTAGCAAAGGGATTTACAGTGGTCTCTCTACTCTATCACGAGTAGCCACCCATTCAAGATAAGAAAAGAATGCTTACTGTTATAGTTTAACCTGATTAAAGTTGGTTTGTTGACTAAAATAAAGCCATCTCTGTTTTCTCTTACGATAAAATTCTCCCTGCTTATTTGGTTGCATTTGGGATGGCTAACACCATCTCCTTTTCTTGGAGGGTCCCTGTCAATAGCTTTGGATCTTTCTTCTGAGTAAGCATCAAAAGGATTATATCACAATATGGAAGTGTCTCTTTTATGTGGGGATTTGGTATAGATTTTGGAACACACTTAATTGATTGTCGTCTTAGATGGAGTATCATTTTCTATGCGTAGCTCTTCGTAAGAATCCTCATTACCTAAATGAAAGTTGGGTTTTCATTAGAAGTAACTGTCTGAGCTTTTCTTATGAATAATTTAGAATGAAACCACTGTATGTTTTTGGCAAAGAGACTGGAGAAATTGGTTTCTCTTTCTTGTATATTTTATTTTATTGGTTTCTCCCTGCCCCTTGTCCCTAGTTTGTTTCTTGCTCCTTTTAGTTTCTTATTAAAAAAAATTATATAAAAAAACATTTGTATATCTTTTCTTGGATTGTCTAGTGATGGGAAGGCCATGGGTGTCGGTGGAGAAAATGCTGTCCGTTCTCTCTTTTAAAAAATTTATAGTTTTAGTTGATAGACGATGTAGAAAGAAAATGAGGTTGCACCAGTGTCATCCTTTTCTTCTAACAATAGTGCCAGATTTCTTGTCTTATAAGTTATGAGGTCCACACCCATATTATCGAAGGTCTTAACTTTTTTAGAGGTGAGACCCATATTCTCTTTCTCTCTCTCTCTCTCTCTTGAAAATGAAATTAAAATTTTCATTGATAAAGTGAATTGAGATTAGCGCTCCAAAATATGAGGTATCTAAAGAAAAGACAAATAGAAGCGACAACCCAACTGATGAACAGTAGTCCAAGCCTGATGGGACGAAAAAATCAACCTCAAATTAACTCGTAGATGCAATATGTAACTAATGAATCTTTAACACTATTTGTGTAACTACCTCTCTTGAACATGTAAAAGGGGCCTTTATAATGTTAGCAAAGACTACTTTCTTAAAGGAAAAGTTCTCTTTTTTCTTGGTGGAAGTATAAGTGTACAACCTTGGCTTGTTTGATTCTTTCAAATGATCTCACTCTTCCGCTTTCCGAAGCCCCTTGAAAAGTTATTTAGATAATGGGGTTGGTTCAGCTGGGACGTTCAAATGATCTTACCTAGTTTCTTCCCCCTGTAAAGCCCCTCAAAAAGTTATTATGACAAAAATGACCATCATTTCTTTACCTAATTAAGGTCTCCATATTGGTTGCTTAAAACAAGACGATGCATCCCTTTTGTTCTCATGTGGGTTTGCATATGTTTCTTGTGCCAGGAGTGCAACCAAAGCCTCATTTGGACCGGGAGAAACCATGGTATATAGGCAAGGAGAAGAATCTCAACTGGTAGGAAGTTTCTTCATCTTCATTGTTTTAAAAAACTATTGAGGACTTGAGCCTTTGTGGAACCATAATAGGCTTACATCTCTCACAAATGATGCTTGCGCTTTTGTGAAAACACATTGAGGCTTACAATCTCTATGCCTCTCCTAGTGATTAGAAAAACAAAAGTGATTTGACTAGTTCTTCAAAAATATTAAAGCTTGAGTTGTGACAATTACTGTTGGGAACTTAAGAATGCTGAAAGCATATATGTATAGTATAAATCAATCCTCTTGGCAATAATAGTAAGAGTAATGATAAAGATCTTCTTTTAGAATTTTTTATTAACATTATGGGGGTGAAGTTTCTTTTTACAATTTTATAGGACTTGTATTTAACAATTCTTGATCATATCAATTTAGGTTTTGTAAAATGTTTTTAATTCATTGTTTGAGACTTACTTCTCATAACGCCTCGAGGCTTATGCCTTTCCTCTTGAAGAGGAAAAGTCTCAAGGCCACCTTTAGCCTGTCAAAACATTGATCTTTAATAAGCTGATGACAACATTGTTTTTCGCCGTAATGATGCCGATGCTCTTAATAATTGGTGGGAAATTTTGTATTTGTTTATGGCTGGTAATGGATTTCGTTGAATATTTCTAAGACTTTGTTGATTGGTACTAATGTGGGTAAGGAAGAAGTTGTTGAATGGGTTTTCGGTTGTTTTCTTTTGACTCCTTTTGTAGTAACACTCAATTCACAGCCTCTTGATGATGGACAAGAAACAGGAAATTCTTTTGGAATTTTAGCTTGTTCATGTTTCAATTGAACTGGAAAGCACTCTTAATACTCTTTTTGTTTTATTTTCTGAGGAAGGGGGTTCTGTCTTCCCCTTTCCTTTAGGATGTTCTTTTTTGAGCCTTTTTGTGCATAATACATATCTTGTTTCTTATCTTAAAAATGGTTATAGACTAATTCATATGGTCTTTTAACTAATATTCCTTAGATTAATACATTTAAGAAATATATTCCTTAGATGAATGTCTGATTCTAGTTACTTTGTGTAGCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGTATATCTGATTCCTTTATTATTTAATTTCTCCCTAAAGAAACTAGAATTTTTGTAGTTTTTTAAGAAAAGAACATGCATATGTTTAATTGTTTAATATTTTTAGAAAGTAGAATAACTATAAAATTTCATATTTTGCTAATGATGGGATGATTTGTAAGAAGAATGAAATAGTATTGTAACTTTTAAATATTTGAAAACAATTTTTTCCCCTAAATTCTTTTGTCTCCCTTTTACTTTGTGACCTCACTCTTCTTGAAAGCACGGCAATTTGTTTTAATATTAAGCAAGGTGTGCCAAAATGTTCCTCACCTAATCTGGTGTACCTTTCCCCACCCTTTCCTATTTATTTATTTCTTTATTTTTGTTTGTCAAGTCTACCCATTGGGGCAATTATTTTCAAGCTCCACTTGATCTTGTTTGTCTCATTTTTTTTTTATTAAATTAAATGGCGTTTCTTGTGAAAATTAATTACTCAAAAGGCTAACCTGAGGGTAGAGCTCAAGTGGTGACATGTTTGTAATTGTTTATAATGTTACACAAGTTTGAACCCCTACCTACTTCTATTCTATCGACAAGCACACACCCATGTGCCCACACGCCCAAGCACACAATGCAAGCCTTTATTAGAGTCTGAATGGGACCTTGGGGGAGCCACCCTGCCAGATAATCTGTATGCTGGAATTTGAAACCTCTTTAGCCTTCATTTTAAAATGAAAAGTTTTGCTTCTGTTTAAGAAAAAAAAATCTTTCTTCGGTTTTTCGTGATGCCCATATTTGTGTTTTTTATTCTACAAATTGGCGGTATAATAAATTTTTTCATGTCAAATATCTGGATTGAAATAACTTCATCTACAGGGTTGCCCTTCTCTTTCGTACTTGCATATCTCTGATTGAAAGTTGGTTCCTTATCCCAAAGTATTAAGTTACGGGGTATAATTTATTGCTTGAGATTATTTTTTATAACATCATCACCTTTCCCTTGCTAACCATGTAATTTTGCTTCCAACTAGCTTTAGATTTTACTCGTGATGCATAGCTACTGTAAGAATACCATATTGTTTAGCAGATTCACATTTATTTTTCGTTTGCTGAGTTTTGTCTGTAACTGGAGCTATTTCCCTTCTTTTCCATAAATTTTGGAAATATTTATTTGTTTGTATAGGAAACCTTCTGTATGTTTCGATAATGCTTTTCCATAGTTTCGTTGAAGAAGCATGAGCACGTTTTTATAGGTAACATAATGTTTGCATGGTTGTATATGTCACTTTGAGATCTGAATTATTTTGGTGACAGATGTTTGTATAGGTAAACATAATCCGCATTGCAACCATCTATTTTGCTGAAAAATCTGAGCATTACATTTTTTTAATCAACTAATTATCTATTCTAATATAAACATCTTGAATGAAATGGTGAGAAACTACCATTTGTGTTTTCGTTCTATCTTGTCTGTTTTATTGCTCTTGCTATTATATACACATATATGTACTTATATTTGTTTTGGGTTTATCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGGTATGCATCTCTAATATCTCTTCAAGATCTGCAAAGGGAATTATCAAATGAATGAATTATACAAAATTAATAAACCTTATGTAAAGTTTTGTTCTAATTTAATTGCAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGATCTTGAGGTGTAGAAACTCGATGTGTGGTATTTGTGGATTTTAATGGGAAAGGTGTTTTTCTTGTGAATTGGATTAGGAGAGATAATTTCTACTGAGATCTTACTCAATTGTCTCAAGATTCCCCTGGTTTCCAGCCTTTGTTTCTCGATCGTTGATGTGAATTGATGAATTGTATGTAACTTAGAGGATTTGAGGTCCATGATTTTCTTTTCTTCTTTTCTTCTTTTTTTGGATTAATTGAGGTTTTTGCCATTTTGTGTTGAATATCTGCTATTATATATATTTTTTTGTTTTAAATTCGGCTCTACTGTGTGGCTTCTGGATTCATTCTCTCTTACCTATAGTTAACTTC

mRNA sequence

AAATGAAAAATCTAAAAAAATTGGGTTAGCGGGCAAACAAGAAACCCTTGTTTCGATCCCCAAAACCCCCCATCCTTTCTCCCATCGTCTTTCTTCTTCCCTCGCCATTTTTTAAGAACCAACAACCAGCTCTGACCAACATTTGATTACCCATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGGGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCATCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGATCTTGAGGTGTAGAAACTCGATGTGTGGTATTTGTGGATTTTAATGGGAAAGGTGTTTTTCTTGTGAATTGGATTAGGAGAGATAATTTCTACTGAGATCTTACTCAATTGTCTCAAGATTCCCCTGGTTTCCAGCCTTTGTTTCTCGATCGTTGATGTGAATTGATGAATTGTATGTAACTTAGAGGATTTGAGGTCCATGATTTTCTTTTCTTCTTTTCTTCTTTTTTTGGATTAATTGAGGTTTTTGCCATTTTGTGTTGAATATCTGCTATTATATATATTTTTTTGTTTTAAATTCGGCTCTACTGTGTGGCTTCTGGATTCATTCTCTCTTACCTATAGTTAACTTC

Coding sequence (CDS)

ATGGCGAGCGCTGATGTAGAGGCTGTCGACTTTGAGCCCGAGGAAGATGACCTCATGGACGAGGATGGGGCCGCCGAAGCCGATGCCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACCGGCGGCGCATCTTCCTCGCTTTCTGGAGGTCCAAAGAAGACTAAGGGTCGTGGATTTCGAGAGGAGTCTGATCGAAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGATGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTCCATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTTGATCGTCGTACTGGGTTCGTCAAGGGATATGCATTAATCGAATACGAGAGTTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGTGCTGAACTTCTGACCCAAATCATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACGCAAGACCTGCTCGAGAACGACGTTCGAGGAGCCCTAGGAGGAGATACTGA

Protein sequence

MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGRGFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNARPARERRSRSPRRRY*
Homology
[Close]
BLAST of CSPI01G30610 vs. ExPASy Swiss-Prot
Match: F4I9J7 (RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 7.8e-66
Identity = 141/206 (68.45%), Postives = 161/206 (78.16%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLSGGPKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFREE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFREE  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGP 180
           +FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNARPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]
BLAST of CSPI01G30610 vs. ExPASy Swiss-Prot
Match: B7FAL5 (RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-65
Identity = 138/205 (67.32%), Postives = 164/205 (80.00%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSG--GPKKTK 60
           + +ADVEAVDF+P++DDLMDED    AD +P AP P+L+S I GG      G  G +KTK
Sbjct: 4   VTNADVEAVDFDPDDDDLMDEDA---ADPTP-APAPRLRSTIAGGGGGGGGGDDGQRKTK 63

Query: 61  GRGFREE-SDRNTRLAG----SDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 120
           GRGFR++ + R++RLAG    SDFDSL S  GPGP RSIEGWI+LVTGVHEEAQEDDL N
Sbjct: 64  GRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHN 123

Query: 121 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 180
            F +FG++KNLHLNLDRRTGFVKGYALIEYE+FEEA+ AI A+DG ELLTQII+VDWAFS
Sbjct: 124 IFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFS 183

Query: 181 HGPIRRKNARPARERRSRS-PRRRY 198
           +GP++R+N R    RRSRS PRRRY
Sbjct: 184 NGPVKRRNIRKRSPRRSRSPPRRRY 204

[Close]
BLAST of CSPI01G30610 vs. ExPASy Swiss-Prot
Match: Q6ATR0 (RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-40
Identity = 100/203 (49.26%), Postives = 130/203 (64.04%), Query Frame = 0 

Query: 2   ASADVEAVDF---EPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTK 61
           A+ DVE VD+   E EE+D MDED           P P +           +S G  +++
Sbjct: 4   AAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHI-----------VSQGVMRSR 63

Query: 62  GRGFREESDRNTRLAGSD---FDSLKSADGP--GPQRSIEGWIILVTGVHEEAQEDDLQN 121
           GR       R+T +  S+   FDSL  A  P  GPQRSIEGWI+LV+GV E+A+EDDL N
Sbjct: 64  GRLL----GRSTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYN 123

Query: 122 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 181
            F +FG +K+LHLNL+RRTG+ KGYAL+EYESFEEA+ AI AM+G +LLT+ + VDWAFS
Sbjct: 124 TFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFS 183

Query: 182 HGPIRRKNARPARERRSRSPRRR 197
            GPI++  +     RRSR+P RR
Sbjct: 184 RGPIQKLTSTRPLHRRSRTPPRR 191

[Close]
BLAST of CSPI01G30610 vs. ExPASy Swiss-Prot
Match: Q6PH90 (RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.6e-39
Identity = 82/143 (57.34%), Postives = 106/143 (74.13%), Query Frame = 0 

Query: 55  KKTKGRGFREESDRNTRLAGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 114
           KK KGRGF  +    TR+   D+DS+ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTRTRIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 174
            FGEFGEIKN+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q ++VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFV 152

Query: 175 HGPIRRKNARPARERRSRSPRRR 197
            GP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]
BLAST of CSPI01G30610 vs. ExPASy Swiss-Prot
Match: Q28BZ1 (RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.1e-38
Identity = 82/143 (57.34%), Postives = 105/143 (73.43%), Query Frame = 0 

Query: 55  KKTKGRGFREESDRNTRLAGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 114
           KK KGRGF  +     R+   D+DS+ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTRARIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFS 174
            FGEFGEIKN+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q I+VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFV 152

Query: 175 HGPIRRKNARPARERRSRSPRRR 197
            GP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]
BLAST of CSPI01G30610 vs. ExPASy TrEMBL
Match: A0A0A0M2V3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           NARPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]
BLAST of CSPI01G30610 vs. ExPASy TrEMBL
Match: A0A1S3BNH9 (RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.1e-102
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           NARPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]
BLAST of CSPI01G30610 vs. ExPASy TrEMBL
Match: A0A6J1HB67 (RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.5e-100
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of CSPI01G30610 vs. ExPASy TrEMBL
Match: A0A6J1JIZ0 (RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 9.4e-99
Identity = 188/197 (95.43%), Postives = 193/197 (97.97%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSL+GGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of CSPI01G30610 vs. ExPASy TrEMBL
Match: A0A6J1DNH7 (RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.1e-98
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+ GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAE+AISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 196

[Close]
BLAST of CSPI01G30610 vs. NCBI nr
Match: XP_004139049.1 (RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding protein 8A-B [Cucumis melo] >KGN66511.1 hypothetical protein Csa_007313 [Cucumis sativus])

HSP 1 Score: 382.5 bits (981), Expect = 2.2e-102
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           NARPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]
BLAST of CSPI01G30610 vs. NCBI nr
Match: XP_038880227.1 (RNA-binding protein Y14A [Benincasa hispida])

HSP 1 Score: 377.5 bits (968), Expect = 7.2e-101
Identity = 193/197 (97.97%), Postives = 196/197 (99.49%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]
BLAST of CSPI01G30610 vs. NCBI nr
Match: XP_022961208.1 (RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo] >KAG6590187.1 RNA-binding protein Y14, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023840.1 RNA-binding protein Y14 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of CSPI01G30610 vs. NCBI nr
Match: XP_022988215.1 (RNA-binding protein Y14A-like [Cucurbita maxima])

HSP 1 Score: 369.4 bits (947), Expect = 2.0e-98
Identity = 188/197 (95.43%), Postives = 193/197 (97.97%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSL+GGPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]
BLAST of CSPI01G30610 vs. NCBI nr
Match: XP_022154366.1 (RNA-binding protein Y14A [Momordica charantia])

HSP 1 Score: 368.2 bits (944), Expect = 4.3e-98
Identity = 190/197 (96.45%), Postives = 194/197 (98.48%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+ GPKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAE+AISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NARPARERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 196

[Close]
BLAST of CSPI01G30610 vs. TAIR 10
Match: AT1G51510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 251.5 bits (641), Expect = 5.5e-67
Identity = 141/206 (68.45%), Postives = 161/206 (78.16%), Query Frame = 0 

Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLSGGPKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFREE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFREE  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGP 180
           +FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNARPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]
BLAST of CSPI01G30610 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-09
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0 

Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNAR--------PARERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

[Close]
BLAST of CSPI01G30610 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 58.9 bits (141), Expect = 5.3e-09
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0 

Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGAELLTQIINVDWAFSHGPIRRKNAR--------PARERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

[Close]
BLAST of CSPI01G30610 vs. TAIR 10
Match: AT3G11400.1 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 38/127 (29.92%), Postives = 68/127 (53.54%), Query Frame = 0 

Query: 45  GASSSLSGGPKKTKGRGFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHE 104
           G SS++S  P    G G       + R AG+D    +SA G   +R  +   + VT + E
Sbjct: 172 GESSTMSAAP----GTGKAAYVPPSMR-AGAD----RSAVGSDMRRRNDENSVRVTNLSE 231

Query: 105 EAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQ 164
           + +E DL   F  FG +  +++ +D++TG  +G+  + + S E+A++AI+ ++G      
Sbjct: 232 DTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNL 289

Query: 165 IINVDWA 172
           I+ V+WA
Sbjct: 292 ILRVEWA 289

[Close]
BLAST of CSPI01G30610 vs. TAIR 10
Match: AT3G11400.2 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 38/127 (29.92%), Postives = 68/127 (53.54%), Query Frame = 0 

Query: 45  GASSSLSGGPKKTKGRGFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHE 104
           G SS++S  P    G G       + R AG+D    +SA G   +R  +   + VT + E
Sbjct: 199 GESSTMSAAP----GTGKAAYVPPSMR-AGAD----RSAVGSDMRRRNDENSVRVTNLSE 258

Query: 105 EAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQ 164
           + +E DL   F  FG +  +++ +D++TG  +G+  + + S E+A++AI+ ++G      
Sbjct: 259 DTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNL 316

Query: 165 IINVDWA 172
           I+ V+WA
Sbjct: 319 ILRVEWA 316

The following BLAST results are available for this feature:
BLAST of CSPI01G30610 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4I9J77.8e-6668.45RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1[more]
B7FAL51.0e-6567.32RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 S... [more]
Q6ATR01.1e-4049.26RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 S... [more]
Q6PH903.6e-3957.34RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1[more]
Q28BZ11.1e-3857.34RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1[more]
BLAST of CSPI01G30610 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0M2V31.1e-102100.00RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV... [more]
A0A1S3BNH91.1e-102100.00RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1[more]
A0A6J1HB676.5e-10096.45RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 ... [more]
A0A6J1JIZ09.4e-9995.43RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 S... [more]
A0A6J1DNH72.1e-9896.45RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=... [more]
BLAST of CSPI01G30610 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139049.12.2e-102100.00RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding... [more]
XP_038880227.17.2e-10197.97RNA-binding protein Y14A [Benincasa hispida][more]
XP_022961208.11.4e-9996.45RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding pr... [more]
XP_022988215.12.0e-9895.43RNA-binding protein Y14A-like [Cucurbita maxima][more]
XP_022154366.14.3e-9896.45RNA-binding protein Y14A [Momordica charantia][more]
BLAST of CSPI01G30610 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G51510.15.5e-6768.45RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G64200.15.3e-0931.62ortholog of human splicing factor SC35 [more]
AT5G64200.25.3e-0931.62ortholog of human splicing factor SC35 [more]
AT3G11400.11.2e-0829.92eukaryotic translation initiation factor 3G1 [more]
AT3G11400.21.2e-0829.92eukaryotic translation initiation factor 3G1 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008111RNA-binding motif protein 8PRINTSPR01738RNABINDINGM8coord: 86..100
score: 79.33
coord: 51..63
score: 50.77
coord: 160..172
score: 55.38
coord: 142..158
score: 44.12
IPR008111RNA-binding motif protein 8PANTHERPTHR45894RNA-BINDING PROTEIN 8Acoord: 2..197
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 96..169
e-value: 4.5E-19
score: 79.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 97..161
e-value: 1.4E-15
score: 56.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 95..173
score: 15.715584
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 39..191
e-value: 1.4E-29
score: 105.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..74
NoneNo IPR availablePANTHERPTHR45894:SF6RNA-BINDING PROTEIN Y14A-LIKEcoord: 2..197
IPR033744RBM8, RNA recognition motifCDDcd12324RRM_RBM8coord: 89..176
e-value: 5.53062E-60
score: 180.491
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 88..196

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G30610.1CSPI01G30610.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
biological_process GO:0006396 RNA processing
cellular_component GO:0005737 cytoplasm
cellular_component GO:0035145 exon-exon junction complex
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding