CSPI01G30150 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI01G30150
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr1: 24663962 .. 24665015 (-)
RNA-Seq Expression	CSPI01G30150
Synteny	CSPI01G30150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTCTCACAGAGAATGCTCCCATCTTACTTGAAGGAGAAACTGACAAAGAAAAGCAACTTGCAGTTGATGCATGAAAACATGCAAAATATATTTGCAAGAATTATATTTTGAATGGATTGGACAAAACACTATATAATGTGTATAGTAGGGTTGATTCGGCCAAAAATCTATGAACTTCATTAGAGAAGAAGTACAAAACTGAAGTTGCTAGTGCAAAGAAATTTACCGTTGAAAATTTTCTGGATTACAAAATGATGGATTCCAAAACTGTAATCAACTAAGGTTCAGGAAATCCAGGTAATTCTACATGATATTCATTCTGAAAATATGACTTTGAATGAGTTTTTTCAGGTAGCATCAATAGTTGAAAAATTGCTACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACACAAAGAGATAAAACTTGAGGAATTTGTGGTCCGACTTGGGATTGAAGAGAATAATAAAAAGGCGAAAAAGTGTACTATGGATAGTACAATAGATCCCAAGGCCAACATTCTAGAAAATAGACCATAGAGTAACAAGAAAAGAAAATTTTCTGGTGAAGGTTCAAATAAAAAATCGTGATTCACAAAAAGGTTCAATGACAAGTGTTACAACTGCAACAAAATGGGACATCAATTGAAAGATTGTCGTAAGTCAAAGAACCTTCAGAAAAAACATGCTTAAGCTTATATCACAGAAGTTGATGAAGTTTCAGATGGTGTTGCAGATATTGACCTTTGTAGAGTCATTTTAGAATGCAACATGGTGGGCAATTCCAAGAAATGGTGGGTAGACACTAGGGCTACTCATCATATTTGTGCCAACAAGAATATGTTCACATCATATGTGTCAGTCTCTAGTGGAGAACAATTATTTATGTGTAACTCATCTACTTCAAAGGTTGAGAGACGAGGAAAAGTGATTCTTAAGATGACCTATGACAAGGAACTCACTCTCAATAATGTGCTTCATGTTCCTGATATTTGCAAGAACTTAGTTTATGGTTCTTTGCTTAGTAAGAATGGCTTCAAGTTG

mRNA sequence

ATGTTTCTCACAGAGAATGCTCCCATCTTACTTGAAGGAGAAACTGACAAAGAAAAGCAACTTGCAAAGAAGTACAAAACTGAAGTTGCTAGTGCAAAGAAATTTACCGTTGAAAATTTTCTGGATTACAAAATGATGGATTCCAAAACTGTAGCATCAATAGTTGAAAAATTGCTACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACACAAAGAGATAAAACTTGAGGAATTTGTGGTCCGACTTGGGATTGAAGAGAATAATAAAAAGGCGAAAAAGTGTACTATGGATAAAGTTGATGAAGTTTCAGATGGTGTTGCAGATATTGACCTTTGTAGAGTCATTTTAGAATGCAACATGGTGGGCAATTCCAAGAAATGGTGGGTAGACACTAGGGCTACTCATCATATTTGTGCCAACAAGAATATGTTCACATCATATGTGTCAGTCTCTAGTGGAGAACAATTATTTATGTGTAACTCATCTACTTCAAAGGTTGAGAGACGAGGAAAAGTGATTCTTAAGATGACCTATGACAAGGAACTCACTCTCAATAATGTGCTTCATGTTCCTGATATTTGCAAGAACTTAGTTTATGGTTCTTTGCTTAGTAAGAATGGCTTCAAGTTG

Coding sequence (CDS)

ATGTTTCTCACAGAGAATGCTCCCATCTTACTTGAAGGAGAAACTGACAAAGAAAAGCAACTTGCAAAGAAGTACAAAACTGAAGTTGCTAGTGCAAAGAAATTTACCGTTGAAAATTTTCTGGATTACAAAATGATGGATTCCAAAACTGTAGCATCAATAGTTGAAAAATTGCTACCCTCATGGAAGGACTTCAAAAATTATCTCAAGCATAAACACAAAGAGATAAAACTTGAGGAATTTGTGGTCCGACTTGGGATTGAAGAGAATAATAAAAAGGCGAAAAAGTGTACTATGGATAAAGTTGATGAAGTTTCAGATGGTGTTGCAGATATTGACCTTTGTAGAGTCATTTTAGAATGCAACATGGTGGGCAATTCCAAGAAATGGTGGGTAGACACTAGGGCTACTCATCATATTTGTGCCAACAAGAATATGTTCACATCATATGTGTCAGTCTCTAGTGGAGAACAATTATTTATGTGTAACTCATCTACTTCAAAGGTTGAGAGACGAGGAAAAGTGATTCTTAAGATGACCTATGACAAGGAACTCACTCTCAATAATGTGCTTCATGTTCCTGATATTTGCAAGAACTTAGTTTATGGTTCTTTGCTTAGTAAGAATGGCTTCAAGTTG

Protein sequence

MFLTENAPILLEGETDKEKQLAKKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEEFVVRLGIEENNKKAKKCTMDKVDEVSDGVADIDLCRVILECNMVGNSKKWWVDTRATHHICANKNMFTSYVSVSSGEQLFMCNSSTSKVERRGKVILKMTYDKELTLNNVLHVPDICKNLVYGSLLSKNGFKL

Homology

[Close]

BLAST of CSPI01G30150 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.3e-06
Identity = 29/86 (33.72%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 116 RVILECNMVGNSKKWWVDTRATHHICANKNMFTSYVSVSSGEQLFMCNSSTSKVERRGKV 175
           R  L  N   N+  W +D+ ATHHI ++ N  + +   + G+ + + + ST  +   G  
Sbjct: 296 RANLAVNSPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSA 355

Query: 176 ILKMTYDKELTLNNVLHVPDICKNLV 202
            L  T  + L LN VL+VP+I KNL+
Sbjct: 356 SLP-TSSRSLDLNKVLYVPNIHKNLI 380

[Close]

BLAST of CSPI01G30150 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.3e-05
Identity = 25/76 (32.89%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 126 NSKKWWVDTRATHHICANKNMFTSYVSVSSGEQLFMCNSSTSKVERRGKVILKMTYDKEL 185
           +S  W +D+ ATHHI ++ N  + +   + G+ + + + ST  +   G   L  T  + L
Sbjct: 327 SSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLS-TKSRPL 386

Query: 186 TLNNVLHVPDICKNLV 202
            L+N+L+VP+I KNL+
Sbjct: 387 NLHNILYVPNIHKNLI 401

[Close]

BLAST of CSPI01G30150 vs. ExPASy TrEMBL
Match: A0A5A7THY2 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001460 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 177/323 (54.80%), Postives = 189/323 (58.51%), Query Frame = 0


Query: 2   FLTENAPILLEGETDKEKQLA--------------------------------------- 61
           FL E+APILLEGETDKEKQLA                                       
Sbjct: 13  FLKEDAPILLEGETDKEKQLAVDAWKHAGYLCKNYTLNGLDNTLYNVYSSVDSTKNLWTS 72

Query: 62  --KKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEE 121
             KKY+ EVA  KKF V  FLDYKM+DSKTVASI+EKL PSWKDFKNYLKHK KEIKLEE
Sbjct: 73  LEKKYQIEVAGVKKFIVGKFLDYKMVDSKTVASIIEKLPPSWKDFKNYLKHKRKEIKLEE 132

Query: 122 FVVRLGIEENNKKAKKCTMD---------------------------------------- 181
            VVRLGIEENN+KA+KC +D                                        
Sbjct: 133 LVVRLGIEENNRKAEKCIIDSRIDPKANIVENRPHSNKKRKFFGEGSNKKPRFTKKLNDK 192

Query: 182 ------------------------------KVDEVSDGVADIDLCRVILECNMVGNSKKW 214
                                         +VDEVSDGV DIDLC VI ECNMVGNSK+W
Sbjct: 193 CFNCNKMGHQSKDYHKPKNFQKKHVQAHITEVDEVSDGVVDIDLCAVISECNMVGNSKEW 252

[Close]

BLAST of CSPI01G30150 vs. ExPASy TrEMBL
Match: A0A5A7T1C5 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00500 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73
Identity = 151/208 (72.60%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 21  LAKKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEE 80
           L KKYKTEVA AKKF V  FLDYKM+DSKTVASI+EKL PSWKDFKNYLK+K KEIKLEE
Sbjct: 80  LEKKYKTEVAGAKKFIVGKFLDYKMVDSKTVASIIEKLPPSWKDFKNYLKYKRKEIKLEE 139

Query: 81  FVVRLGIEENNKKAKKCTMDKVDEVSDGVA---------------DIDLCRVILECNMVG 140
            VVRLGIEENN+KA+KC +D   ++   +                DIDLC VI ECNMV 
Sbjct: 140 LVVRLGIEENNRKAEKCIIDSTIDLKANIVENRPRNNKKRKFSGEDIDLCAVISECNMVN 199

Query: 141 NSKKWWVDTRATHHICANKNMFTSYVSVSSGEQLFMCNSSTSKVERRGKVILKMTYDKEL 200
           NSK+WWVDT ATHHI ANKNMFTSYVSVS+GEQLFM N S SKVE +GKVILKMT +KEL
Sbjct: 200 NSKEWWVDTGATHHIYANKNMFTSYVSVSNGEQLFMGNFSMSKVEGQGKVILKMTSEKEL 259

Query: 201 TLNNVLHVPDICKNLVYGSLLSKNGFKL 214
           TLNNV HVPDI KNLV GSLLSKNGFKL
Sbjct: 260 TLNNVFHVPDIRKNLVSGSLLSKNGFKL 287

[Close]

BLAST of CSPI01G30150 vs. ExPASy TrEMBL
Match: A0A5D3BX52 (Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00330 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.4e-60
Identity = 155/296 (52.36%), Postives = 171/296 (57.77%), Query Frame = 0


Query: 2   FLTENAPILLEGETDKEKQLA--------------------------------------- 61
           FL E+A ILLEGETDKEKQLA                                       
Sbjct: 47  FLKEDALILLEGETDKEKQLAVDAWKHAEYRCKNYIMNRLDNTLYNVYSRVDSAKNLWTS 106

Query: 62  --KKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEE 121
             KKYKTEVA AKKFTV   LDYKM+DSKTV S V+++    +DFKNYLKHK KEIKLEE
Sbjct: 107 LEKKYKTEVAGAKKFTVGKCLDYKMVDSKTVISQVQEI----QDFKNYLKHKRKEIKLEE 166

Query: 122 FVVRLGIEENNKKAKKCTMDKVDEVSDGVA------------------------------ 181
            VVRLGIEENN+KA+KC +D   +    +                               
Sbjct: 167 LVVRLGIEENNRKAEKCIIDSTIDPKANIVENRPHNNKKRKFSGEGSNKKPRFTKKFNDN 226

Query: 182 -------DIDLCRVIL------ECNMVGNSKKWWVDTRATHHICANKNMFTSYVSVSSGE 214
                  DI+L  VIL      +     NSK+WWVDT  THHIC NKNMFTSYVSVS+GE
Sbjct: 227 ASTATKWDINLRIVILTFVQSFQSATWNNSKEWWVDTGVTHHICTNKNMFTSYVSVSNGE 286

[Close]

BLAST of CSPI01G30150 vs. ExPASy TrEMBL
Match: A0A5A7U1K6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G00690 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 6.7e-58
Identity = 140/253 (55.34%), Postives = 159/253 (62.85%), Query Frame = 0


Query: 2   FLTENAPILLEGETDKEKQLA--------------------------------------- 61
           FLTE+APIL EGET+KEKQLA                                       
Sbjct: 47  FLTEDAPILSEGETNKEKQLAIDAWKHVEYLCKNYILNGLDNTLYNVYSSVHSAKNLWTS 106

Query: 62  --KKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEE 121
             KKYKTEV  AKKF V  FLDYKM+ SKTV + V+++    K  KN+            
Sbjct: 107 LEKKYKTEVVGAKKFIVGKFLDYKMVYSKTVMNQVQEIQDCRKP-KNF------------ 166

Query: 122 FVVRLGIEENNKKAKKCTMDKVDEVSDGVADIDLCRVILECNMVGNSKKWWVDTRATHHI 181
                      KK  +  + KVDEVSDGVADIDLC VILECNM+GNSK+WWVDT ATHHI
Sbjct: 167 ----------QKKHAQAHIIKVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATHHI 226

Query: 182 CANKNMFTSYVSVSSGEQLFMCNSSTSKVERRGKVILKMTYDKELTLNNVLHVPDICKNL 214
           CANKN+FT YVS+S+GEQLFM +SSTSKV+ +GKVILKMT  KELTLNNVLHVPDI KNL
Sbjct: 227 CANKNLFTLYVSISNGEQLFMGSSSTSKVKGQGKVILKMTSRKELTLNNVLHVPDIRKNL 276

[Close]

BLAST of CSPI01G30150 vs. ExPASy TrEMBL
Match: A0A1S3CTZ4 (uncharacterized protein LOC103504514 OS=Cucumis melo OX=3656 GN=LOC103504514 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 2.8e-56
Identity = 147/287 (51.22%), Postives = 157/287 (54.70%), Query Frame = 0


Query: 2   FLTENAPILLEGETDKEKQLA--------------------------------------- 61
           FL E+APIL EGETDKEKQLA                                       
Sbjct: 13  FLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDYTLYNEYSSVDSAKNLWTS 72

Query: 62  --KKYKTEVASAKKFTVENFLDYKMMDSKT---------VASIVEKLLPSWKDFKNYLKH 121
              KYKTEVA AKKF V  FLDYKM+DSKT         VASI+EKL PSWKDFKNYLKH
Sbjct: 73  LENKYKTEVAGAKKFIVGKFLDYKMVDSKTVISQVQEIQVASIIEKLPPSWKDFKNYLKH 132

Query: 122 KHKEIKLEEFVVRLGIEENNKKAKKCTMD-------------------------KVDEVS 181
           K K+IKLEE VVRLGIEENN+KA+KC +D                         +VDEVS
Sbjct: 133 KRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDLKAIVVENRPHSNKKRKFSGEEVDEVS 192

Query: 182 DGVADIDLCRVILECNMVGNSKKWWVDTRATHHICANKNMFTSYVSVSSGEQLFMCNSST 214
           DGVADIDLC VI ECNMVGNSK+WW                                   
Sbjct: 193 DGVADIDLCAVISECNMVGNSKEWW----------------------------------- 252

[Close]

BLAST of CSPI01G30150 vs. NCBI nr
Match: KAA0042920.1 (pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-76
Identity = 177/323 (54.80%), Postives = 189/323 (58.51%), Query Frame = 0


Query: 2   FLTENAPILLEGETDKEKQLA--------------------------------------- 61
           FL E+APILLEGETDKEKQLA                                       
Sbjct: 13  FLKEDAPILLEGETDKEKQLAVDAWKHAGYLCKNYTLNGLDNTLYNVYSSVDSTKNLWTS 72

Query: 62  --KKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEE 121
             KKY+ EVA  KKF V  FLDYKM+DSKTVASI+EKL PSWKDFKNYLKHK KEIKLEE
Sbjct: 73  LEKKYQIEVAGVKKFIVGKFLDYKMVDSKTVASIIEKLPPSWKDFKNYLKHKRKEIKLEE 132

Query: 122 FVVRLGIEENNKKAKKCTMD---------------------------------------- 181
            VVRLGIEENN+KA+KC +D                                        
Sbjct: 133 LVVRLGIEENNRKAEKCIIDSRIDPKANIVENRPHSNKKRKFFGEGSNKKPRFTKKLNDK 192

Query: 182 ------------------------------KVDEVSDGVADIDLCRVILECNMVGNSKKW 214
                                         +VDEVSDGV DIDLC VI ECNMVGNSK+W
Sbjct: 193 CFNCNKMGHQSKDYHKPKNFQKKHVQAHITEVDEVSDGVVDIDLCAVISECNMVGNSKEW 252

[Close]

BLAST of CSPI01G30150 vs. NCBI nr
Match: KAA0036703.1 (pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 286.2 bits (731), Expect = 2.3e-73
Identity = 151/208 (72.60%), Postives = 164/208 (78.85%), Query Frame = 0


Query: 21  LAKKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEE 80
           L KKYKTEVA AKKF V  FLDYKM+DSKTVASI+EKL PSWKDFKNYLK+K KEIKLEE
Sbjct: 80  LEKKYKTEVAGAKKFIVGKFLDYKMVDSKTVASIIEKLPPSWKDFKNYLKYKRKEIKLEE 139

Query: 81  FVVRLGIEENNKKAKKCTMDKVDEVSDGVA---------------DIDLCRVILECNMVG 140
            VVRLGIEENN+KA+KC +D   ++   +                DIDLC VI ECNMV 
Sbjct: 140 LVVRLGIEENNRKAEKCIIDSTIDLKANIVENRPRNNKKRKFSGEDIDLCAVISECNMVN 199

Query: 141 NSKKWWVDTRATHHICANKNMFTSYVSVSSGEQLFMCNSSTSKVERRGKVILKMTYDKEL 200
           NSK+WWVDT ATHHI ANKNMFTSYVSVS+GEQLFM N S SKVE +GKVILKMT +KEL
Sbjct: 200 NSKEWWVDTGATHHIYANKNMFTSYVSVSNGEQLFMGNFSMSKVEGQGKVILKMTSEKEL 259

Query: 201 TLNNVLHVPDICKNLVYGSLLSKNGFKL 214
           TLNNV HVPDI KNLV GSLLSKNGFKL
Sbjct: 260 TLNNVFHVPDIRKNLVSGSLLSKNGFKL 287

[Close]

BLAST of CSPI01G30150 vs. NCBI nr
Match: TYK03675.1 (pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 242.7 bits (618), Expect = 3.0e-60
Identity = 155/296 (52.36%), Postives = 171/296 (57.77%), Query Frame = 0


Query: 2   FLTENAPILLEGETDKEKQLA--------------------------------------- 61
           FL E+A ILLEGETDKEKQLA                                       
Sbjct: 47  FLKEDALILLEGETDKEKQLAVDAWKHAEYRCKNYIMNRLDNTLYNVYSRVDSAKNLWTS 106

Query: 62  --KKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEE 121
             KKYKTEVA AKKFTV   LDYKM+DSKTV S V+++    +DFKNYLKHK KEIKLEE
Sbjct: 107 LEKKYKTEVAGAKKFTVGKCLDYKMVDSKTVISQVQEI----QDFKNYLKHKRKEIKLEE 166

Query: 122 FVVRLGIEENNKKAKKCTMDKVDEVSDGVA------------------------------ 181
            VVRLGIEENN+KA+KC +D   +    +                               
Sbjct: 167 LVVRLGIEENNRKAEKCIIDSTIDPKANIVENRPHNNKKRKFSGEGSNKKPRFTKKFNDN 226

Query: 182 -------DIDLCRVIL------ECNMVGNSKKWWVDTRATHHICANKNMFTSYVSVSSGE 214
                  DI+L  VIL      +     NSK+WWVDT  THHIC NKNMFTSYVSVS+GE
Sbjct: 227 ASTATKWDINLRIVILTFVQSFQSATWNNSKEWWVDTGVTHHICTNKNMFTSYVSVSNGE 286

[Close]

BLAST of CSPI01G30150 vs. NCBI nr
Match: KAA0048117.1 (hypothetical protein E6C27_scaffold385G001960 [Cucumis melo var. makuwa] >TYJ96435.1 hypothetical protein E5676_scaffold546G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 1.4e-57
Identity = 140/253 (55.34%), Postives = 159/253 (62.85%), Query Frame = 0


Query: 2   FLTENAPILLEGETDKEKQLA--------------------------------------- 61
           FLTE+APIL EGET+KEKQLA                                       
Sbjct: 47  FLTEDAPILSEGETNKEKQLAIDAWKHVEYLCKNYILNGLDNTLYNVYSSVHSAKNLWTS 106

Query: 62  --KKYKTEVASAKKFTVENFLDYKMMDSKTVASIVEKLLPSWKDFKNYLKHKHKEIKLEE 121
             KKYKTEV  AKKF V  FLDYKM+ SKTV + V+++    K  KN+            
Sbjct: 107 LEKKYKTEVVGAKKFIVGKFLDYKMVYSKTVMNQVQEIQDCRKP-KNF------------ 166

Query: 122 FVVRLGIEENNKKAKKCTMDKVDEVSDGVADIDLCRVILECNMVGNSKKWWVDTRATHHI 181
                      KK  +  + KVDEVSDGVADIDLC VILECNM+GNSK+WWVDT ATHHI
Sbjct: 167 ----------QKKHAQAHIIKVDEVSDGVADIDLCAVILECNMMGNSKEWWVDTGATHHI 226

Query: 182 CANKNMFTSYVSVSSGEQLFMCNSSTSKVERRGKVILKMTYDKELTLNNVLHVPDICKNL 214
           CANKN+FT YVS+S+GEQLFM +SSTSKV+ +GKVILKMT  KELTLNNVLHVPDI KNL
Sbjct: 227 CANKNLFTLYVSISNGEQLFMGSSSTSKVKGQGKVILKMTSRKELTLNNVLHVPDIRKNL 276

[Close]

BLAST of CSPI01G30150 vs. NCBI nr
Match: XP_008467076.1 (PREDICTED: uncharacterized protein LOC103504514, partial [Cucumis melo])

HSP 1 Score: 228.4 bits (581), Expect = 5.8e-56
Identity = 147/287 (51.22%), Postives = 157/287 (54.70%), Query Frame = 0


Query: 2   FLTENAPILLEGETDKEKQLA--------------------------------------- 61
           FL E+APIL EGETDKEKQLA                                       
Sbjct: 13  FLKEDAPILPEGETDKEKQLAVDAWKHAEYLCKNYILNGLDYTLYNEYSSVDSAKNLWTS 72

Query: 62  --KKYKTEVASAKKFTVENFLDYKMMDSKT---------VASIVEKLLPSWKDFKNYLKH 121
              KYKTEVA AKKF V  FLDYKM+DSKT         VASI+EKL PSWKDFKNYLKH
Sbjct: 73  LENKYKTEVAGAKKFIVGKFLDYKMVDSKTVISQVQEIQVASIIEKLPPSWKDFKNYLKH 132

Query: 122 KHKEIKLEEFVVRLGIEENNKKAKKCTMD-------------------------KVDEVS 181
           K K+IKLEE VVRLGIEENN+KA+KC +D                         +VDEVS
Sbjct: 133 KRKKIKLEELVVRLGIEENNRKAEKCIIDSTIDLKAIVVENRPHSNKKRKFSGEEVDEVS 192

Query: 182 DGVADIDLCRVILECNMVGNSKKWWVDTRATHHICANKNMFTSYVSVSSGEQLFMCNSST 214
           DGVADIDLC VI ECNMVGNSK+WW                                   
Sbjct: 193 DGVADIDLCAVISECNMVGNSKEWW----------------------------------- 252

The following BLAST results are available for this feature:

BLAST of CSPI01G30150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	3.3e-06	33.72	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.3e-05	32.89	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of CSPI01G30150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THY2	1.4e-76	54.80	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G0014...	[more]
A0A5A7T1C5	1.1e-73	72.60	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G0050...	[more]
A0A5D3BX52	1.4e-60	52.36	Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G0033...	[more]
A0A5A7U1K6	6.7e-58	55.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CTZ4	2.8e-56	51.22	uncharacterized protein LOC103504514 OS=Cucumis melo OX=3656 GN=LOC103504514 PE=...	[more]

BLAST of CSPI01G30150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0042920.1	2.9e-76	54.80	pol polyprotein [Cucumis melo var. makuwa] >TYK05320.1 pol polyprotein [Cucumis ...	[more]
KAA0036703.1	2.3e-73	72.60	pol polyprotein [Cucumis melo var. makuwa]	[more]
TYK03675.1	3.0e-60	52.36	pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0048117.1	1.4e-57	55.34	hypothetical protein E6C27_scaffold385G001960 [Cucumis melo var. makuwa] >TYJ964...	[more]
XP_008467076.1	5.8e-56	51.22	PREDICTED: uncharacterized protein LOC103504514, partial [Cucumis melo]	[more]

BLAST of CSPI01G30150 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47592	PBF68 PROTEIN	coord: 113..212 coord: 19..97
None	No IPR available	PANTHER	PTHR47592:SF11	SUBFAMILY NOT NAMED	coord: 113..212 coord: 19..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G30150.1	CSPI01G30150.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding